Wall clock time and date at job start Mon Mar 30 2020 01:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34177 * 125.16204 * 2 1 4 4 C 1.38033 * 107.87723 * 180.02562 * 3 2 1 5 5 C 1.47205 * 126.81519 * 180.02562 * 4 3 2 6 6 O 1.21643 * 119.99899 * 180.02562 * 5 4 3 7 7 N 1.34770 * 120.00283 * 0.02820 * 5 4 3 8 8 C 1.36962 * 120.00261 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00190 * 0.02562 * 8 7 5 10 10 C 1.38987 * 120.00259 * 179.72167 * 8 7 5 11 11 N 1.31414 * 119.99874 * 0.27502 * 10 8 7 12 12 Si 1.86789 * 120.00310 * 180.27688 * 10 8 7 13 13 H 1.48504 * 109.47329 * 60.00039 * 12 10 8 14 14 H 1.48498 * 109.47444 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47278 * 299.99838 * 12 10 8 16 16 C 1.46627 * 106.36889 * 0.26448 * 4 3 2 17 17 C 1.48279 * 126.51210 * 179.73727 * 16 4 3 18 18 C 1.39814 * 120.54289 * 144.99825 * 17 16 4 19 19 C 1.38402 * 118.30893 * 179.97438 * 18 17 16 20 20 C 1.38320 * 119.28843 * 0.02562 * 19 18 17 21 21 N 1.31893 * 121.03962 * 0.02562 * 20 19 18 22 22 C 1.31743 * 121.85370 * 359.68277 * 21 20 19 23 23 N 1.31373 * 106.97623 * 359.55597 * 16 4 3 24 24 H 1.09001 * 109.47425 * 89.99838 * 1 2 3 25 25 H 1.09007 * 109.47098 * 209.99602 * 1 2 3 26 26 H 1.08998 * 109.46928 * 329.99163 * 1 2 3 27 27 H 1.08005 * 126.05982 * 0.07940 * 3 2 1 28 28 H 0.97000 * 119.99567 * 359.97438 * 7 5 4 29 29 H 0.96996 * 120.00334 * 179.97438 * 11 10 8 30 30 H 1.08004 * 120.84648 * 359.95723 * 18 17 16 31 31 H 1.08001 * 120.35373 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.47912 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.70416 * 180.31606 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2377 1.0969 0.0000 4 6 3.5557 0.6868 -0.0006 5 6 4.7481 1.5500 -0.0003 6 8 5.8585 1.0533 -0.0013 7 7 4.6096 2.8905 0.0013 8 6 5.7191 3.6936 0.0021 9 1 6.7050 3.2527 0.0011 10 6 5.5763 5.0762 -0.0022 11 7 4.3767 5.6128 -0.0016 12 14 7.0894 6.1714 -0.0089 13 1 7.8984 5.8906 -1.2222 14 1 6.6695 7.5958 -0.0121 15 1 7.9033 5.8987 1.2029 16 6 3.5322 -0.7793 -0.0075 17 6 4.7097 -1.6804 -0.0159 18 6 4.6770 -2.8988 0.6691 19 6 5.8018 -3.7043 0.6299 20 6 6.9121 -3.2820 -0.0787 21 7 6.9140 -2.1265 -0.7146 22 6 5.8654 -1.3289 -0.7106 23 7 2.2698 -1.1427 -0.0007 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.8900 2.1195 0.0012 28 1 3.7242 3.2866 0.0018 29 1 4.2770 6.5776 -0.0042 30 1 3.7964 -3.2035 1.2153 31 1 5.8124 -4.6524 1.1470 32 1 7.7913 -3.9083 -0.1117 33 1 5.9032 -0.3926 -1.2475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115932106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:22 Heat of formation + Delta-G solvation = 79.916127 kcal Electronic energy + Delta-G solvation = -19900.547753 eV Core-core repulsion = 16735.196111 eV Total energy + Delta-G solvation = -3165.351643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80279 -39.41677 -37.78673 -34.16218 -33.56416 -31.88632 -31.50448 -30.60835 -29.81810 -26.66805 -25.03026 -23.36776 -23.14503 -21.72990 -19.84641 -19.10188 -18.16014 -16.90614 -16.44920 -15.76828 -15.66647 -15.30024 -14.99795 -14.44328 -13.97374 -13.68125 -13.56467 -13.28583 -13.05472 -12.80460 -12.71991 -12.40947 -12.05211 -11.63522 -11.45124 -11.07871 -10.65418 -10.44646 -10.24773 -9.88319 -9.56650 -9.31087 -9.04294 -8.66142 -8.32766 -8.01232 -7.89577 -6.49846 -3.84877 1.17982 1.67204 1.98753 2.56431 2.72505 3.23454 3.24305 3.29443 4.13947 4.26004 4.37448 4.44843 4.76059 4.92617 5.05637 5.10038 5.12368 5.17300 5.29132 5.33607 5.34258 5.43432 5.61323 5.86204 5.94751 6.22385 6.29797 6.41158 6.62955 6.74635 7.09981 7.16441 7.49711 7.81113 8.03385 8.42727 8.56471 9.12137 9.48451 10.02567 10.67743 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.006050 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.443087 B = 4626.801113 C = 6274.610311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.373 5.373 3 C 0.075 3.925 4 C -0.236 4.236 5 C 0.507 3.493 6 O -0.588 6.588 7 N -0.548 5.548 8 C -0.293 4.293 9 H 0.107 0.893 10 C 0.023 3.977 11 N -0.898 5.898 12 Si 0.933 3.067 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.154 3.846 17 C -0.069 4.069 18 C -0.052 4.052 19 C -0.195 4.195 20 C 0.100 3.900 21 N -0.491 5.491 22 C 0.174 3.826 23 N -0.293 5.293 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.184 0.816 28 H 0.390 0.610 29 H 0.273 0.727 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 -11.096 0.603 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.154 5.154 3 C -0.072 4.072 4 C -0.250 4.250 5 C 0.294 3.706 6 O -0.475 6.475 7 N -0.182 5.182 8 C -0.423 4.423 9 H 0.125 0.875 10 C -0.179 4.179 11 N -0.539 5.539 12 Si 0.760 3.240 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.014 4.014 17 C -0.073 4.073 18 C -0.079 4.079 19 C -0.215 4.215 20 C -0.058 4.058 21 N -0.199 5.199 22 C 0.016 3.984 23 N -0.114 5.114 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.201 0.799 28 H 0.224 0.776 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.196 -11.863 0.155 13.876 hybrid contribution -0.392 1.411 0.671 1.611 sum -7.588 -10.452 0.826 12.942 Atomic orbital electron populations 1.21871 0.74299 1.04450 1.03361 1.47931 1.06582 1.03338 1.57553 1.22992 0.90718 0.93221 1.00275 1.21724 0.93323 0.92542 1.17454 1.16754 0.86991 0.82043 0.84792 1.90557 1.25893 1.73453 1.57586 1.41745 1.09631 1.03916 1.62892 1.19749 0.88356 0.87330 1.46841 0.87474 1.25300 0.98177 0.97358 0.97101 1.69590 1.21836 1.12716 1.49776 0.85875 0.80753 0.78158 0.79259 1.19708 1.20969 1.19795 1.21498 0.90459 0.91261 0.98185 1.18699 0.93069 0.93701 1.01820 1.21553 0.98141 0.92369 0.95876 1.21905 0.94841 1.01475 1.03275 1.22843 0.97312 0.93103 0.92503 1.67870 1.28308 1.04160 1.19596 1.23717 0.85455 0.96660 0.92599 1.77160 1.01374 1.07207 1.25640 0.90779 0.89460 0.89283 0.79916 0.77619 0.91670 0.85175 0.85176 0.83275 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 11.39 59.85 0.68 1.59 16 2 N -0.37 -5.47 3.95 -67.62 -0.27 -5.74 16 3 C 0.07 1.21 10.94 -16.60 -0.18 1.03 16 4 C -0.24 -4.76 6.27 -102.95 -0.65 -5.40 16 5 C 0.51 12.17 7.63 -12.62 -0.10 12.08 16 6 O -0.59 -15.56 12.06 5.24 0.06 -15.50 16 7 N -0.55 -13.62 5.27 -12.01 -0.06 -13.69 16 8 C -0.29 -7.95 9.68 -14.98 -0.15 -8.09 16 9 H 0.11 3.04 7.15 -52.49 -0.38 2.66 16 10 C 0.02 0.59 5.50 -17.45 -0.10 0.50 16 11 N -0.90 -23.51 13.05 55.50 0.72 -22.79 16 12 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 C 0.15 2.97 6.96 -80.55 -0.56 2.41 16 17 C -0.07 -1.29 5.74 -104.77 -0.60 -1.89 16 18 C -0.05 -0.82 9.92 -38.93 -0.39 -1.20 16 19 C -0.19 -2.65 10.10 -39.49 -0.40 -3.04 16 20 C 0.10 1.49 11.17 -17.49 -0.20 1.29 16 21 N -0.49 -9.27 10.35 -12.96 -0.13 -9.40 16 22 C 0.17 3.51 8.96 -17.18 -0.15 3.35 16 23 N -0.29 -5.08 12.48 34.58 0.43 -4.65 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.18 2.47 7.48 -52.48 -0.39 2.08 16 28 H 0.39 9.10 6.85 -40.82 -0.28 8.82 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.18 4.07 5.69 -52.49 -0.30 3.78 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -32.56 296.38 -5.60 -38.16 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.02 Total: 10.94 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.78 Total: 2.62 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.69 Total: -56.26 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.06 Total: -15.50 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.56 -5.60 -38.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115932106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.077 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds