Wall clock time and date at job start Mon Mar 30 2020 01:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34177 * 125.16204 * 2 1 4 4 C 1.38033 * 107.87723 * 180.02562 * 3 2 1 5 5 C 1.47205 * 126.81519 * 180.02562 * 4 3 2 6 6 O 1.21643 * 119.99899 * 180.02562 * 5 4 3 7 7 N 1.34770 * 120.00283 * 0.02820 * 5 4 3 8 8 C 1.36962 * 120.00261 * 179.97438 * 7 5 4 9 9 H 1.08002 * 120.00190 * 0.02562 * 8 7 5 10 10 C 1.38987 * 120.00259 * 179.72167 * 8 7 5 11 11 N 1.31414 * 119.99874 * 0.27502 * 10 8 7 12 12 Si 1.86789 * 120.00310 * 180.27688 * 10 8 7 13 13 H 1.48504 * 109.47329 * 60.00039 * 12 10 8 14 14 H 1.48498 * 109.47444 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47278 * 299.99838 * 12 10 8 16 16 C 1.46627 * 106.36889 * 0.26448 * 4 3 2 17 17 C 1.48279 * 126.51210 * 179.73727 * 16 4 3 18 18 C 1.39814 * 120.54289 * 144.99825 * 17 16 4 19 19 C 1.38402 * 118.30893 * 179.97438 * 18 17 16 20 20 C 1.38320 * 119.28843 * 0.02562 * 19 18 17 21 21 N 1.31893 * 121.03962 * 0.02562 * 20 19 18 22 22 C 1.31743 * 121.85370 * 359.68277 * 21 20 19 23 23 N 1.31373 * 106.97623 * 359.55597 * 16 4 3 24 24 H 1.09001 * 109.47425 * 89.99838 * 1 2 3 25 25 H 1.09007 * 109.47098 * 209.99602 * 1 2 3 26 26 H 1.08998 * 109.46928 * 329.99163 * 1 2 3 27 27 H 1.08005 * 126.05982 * 0.07940 * 3 2 1 28 28 H 0.97000 * 119.99567 * 359.97438 * 7 5 4 29 29 H 0.96996 * 120.00334 * 179.97438 * 11 10 8 30 30 H 1.08004 * 120.84648 * 359.95723 * 18 17 16 31 31 H 1.08001 * 120.35373 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.47912 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.70416 * 180.31606 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2377 1.0969 0.0000 4 6 3.5557 0.6868 -0.0006 5 6 4.7481 1.5500 -0.0003 6 8 5.8585 1.0533 -0.0013 7 7 4.6096 2.8905 0.0013 8 6 5.7191 3.6936 0.0021 9 1 6.7050 3.2527 0.0011 10 6 5.5763 5.0762 -0.0022 11 7 4.3767 5.6128 -0.0016 12 14 7.0894 6.1714 -0.0089 13 1 7.8984 5.8906 -1.2222 14 1 6.6695 7.5958 -0.0121 15 1 7.9033 5.8987 1.2029 16 6 3.5322 -0.7793 -0.0075 17 6 4.7097 -1.6804 -0.0159 18 6 4.6770 -2.8988 0.6691 19 6 5.8018 -3.7043 0.6299 20 6 6.9121 -3.2820 -0.0787 21 7 6.9140 -2.1265 -0.7146 22 6 5.8654 -1.3289 -0.7106 23 7 2.2698 -1.1427 -0.0007 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.8900 2.1195 0.0012 28 1 3.7242 3.2866 0.0018 29 1 4.2770 6.5776 -0.0042 30 1 3.7964 -3.2035 1.2153 31 1 5.8124 -4.6524 1.1470 32 1 7.7913 -3.9083 -0.1117 33 1 5.9032 -0.3926 -1.2475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115932106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:22 Heat of formation + Delta-G solvation = 56.516226 kcal Electronic energy + Delta-G solvation = -19901.562449 eV Core-core repulsion = 16735.196111 eV Total energy + Delta-G solvation = -3166.366338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.15339 -40.69886 -39.64325 -36.02326 -34.89088 -33.40905 -33.08891 -31.86505 -31.28001 -27.88217 -26.80680 -24.74032 -24.42485 -23.19190 -21.19978 -20.72289 -19.98817 -18.38484 -17.82403 -17.18082 -17.05971 -16.56601 -16.44775 -16.03657 -15.72210 -15.22423 -14.87754 -14.76070 -14.58010 -13.94913 -13.79475 -13.54013 -13.46531 -13.34378 -12.93734 -12.69566 -12.40069 -12.14138 -11.94542 -11.48563 -11.16070 -10.60379 -10.36932 -10.32635 -10.00164 -9.79627 -9.28487 -8.46712 -5.90223 -0.11681 0.41054 0.61267 1.25467 1.43501 1.46191 1.50135 1.54550 2.31917 2.54801 2.97504 3.11437 3.34546 3.39302 3.60612 3.79122 3.98757 4.05425 4.10328 4.24980 4.45476 4.47161 4.58108 4.67097 4.68940 4.72959 4.99265 5.10364 5.33319 5.35825 5.44729 5.84812 5.91559 6.03683 6.46885 6.63422 7.12260 7.14072 7.57169 8.14230 8.70851 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.006050 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.443087 B = 4626.801113 C = 6274.610311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.358 5.358 3 C 0.105 3.895 4 C -0.286 4.286 5 C 0.510 3.490 6 O -0.619 6.619 7 N -0.558 5.558 8 C -0.328 4.328 9 H 0.081 0.919 10 C -0.009 4.009 11 N -0.915 5.915 12 Si 0.991 3.009 13 H -0.273 1.273 14 H -0.269 1.269 15 H -0.274 1.274 16 C 0.143 3.857 17 C -0.091 4.091 18 C -0.054 4.054 19 C -0.173 4.173 20 C 0.094 3.906 21 N -0.522 5.522 22 C 0.146 3.854 23 N -0.296 5.296 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.213 0.787 28 H 0.396 0.604 29 H 0.279 0.721 30 H 0.152 0.848 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -12.453 1.490 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.138 5.138 3 C -0.045 4.045 4 C -0.301 4.301 5 C 0.299 3.701 6 O -0.508 6.508 7 N -0.193 5.193 8 C -0.458 4.458 9 H 0.099 0.901 10 C -0.209 4.209 11 N -0.556 5.556 12 Si 0.815 3.185 13 H -0.198 1.198 14 H -0.193 1.193 15 H -0.199 1.199 16 C -0.024 4.024 17 C -0.095 4.095 18 C -0.081 4.081 19 C -0.192 4.192 20 C -0.063 4.063 21 N -0.231 5.231 22 C -0.011 4.011 23 N -0.117 5.117 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.138 0.862 27 H 0.229 0.771 28 H 0.230 0.770 29 H 0.088 0.912 30 H 0.169 0.831 31 H 0.197 0.803 32 H 0.206 0.794 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.999 -13.241 1.037 16.043 hybrid contribution 0.023 1.631 0.398 1.679 sum -8.976 -11.610 1.435 14.745 Atomic orbital electron populations 1.22444 0.70499 1.06804 1.05438 1.48455 1.08479 1.02149 1.54696 1.23295 0.89522 0.94704 0.96940 1.21455 0.93516 0.92910 1.22252 1.17361 0.87964 0.82075 0.82716 1.90542 1.27860 1.74141 1.58258 1.41675 1.09257 1.04089 1.64327 1.19653 0.88198 0.88437 1.49516 0.90136 1.25982 1.00951 0.97755 0.96227 1.69634 1.22914 1.13210 1.49841 0.85013 0.77577 0.77030 0.78883 1.19829 1.19293 1.19906 1.21632 0.91332 0.90934 0.98547 1.18821 0.92616 0.95260 1.02775 1.21877 0.99740 0.91258 0.95188 1.22408 0.93005 1.02445 1.01381 1.23555 0.99322 0.91966 0.91453 1.67767 1.28257 1.05842 1.21246 1.23154 0.87135 0.96428 0.94401 1.77114 1.00673 1.08219 1.25693 0.88772 0.87975 0.86193 0.77086 0.76984 0.91163 0.83073 0.80262 0.79417 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 11.39 127.77 1.46 2.67 16 2 N -0.36 -9.65 3.95 -367.85 -1.45 -11.11 16 3 C 0.11 3.28 10.94 84.29 0.92 4.21 16 4 C -0.29 -11.87 6.27 -18.78 -0.12 -11.99 16 5 C 0.51 25.93 7.63 86.60 0.66 26.60 16 6 O -0.62 -35.37 12.06 -4.17 -0.05 -35.42 16 7 N -0.56 -29.04 5.27 -310.17 -1.64 -30.68 16 8 C -0.33 -18.69 9.68 84.07 0.81 -17.87 16 9 H 0.08 4.90 7.15 -2.91 -0.02 4.88 16 10 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 11 N -0.92 -48.14 13.05 21.67 0.28 -47.85 16 12 Si 0.99 42.86 29.55 68.60 2.03 44.88 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 C 0.14 5.59 6.96 44.08 0.31 5.90 16 17 C -0.09 -3.48 5.74 -19.96 -0.11 -3.59 16 18 C -0.05 -1.59 9.92 22.69 0.23 -1.37 16 19 C -0.17 -4.17 10.10 22.33 0.23 -3.94 16 20 C 0.09 2.65 11.17 84.70 0.95 3.60 16 21 N -0.52 -20.30 10.35 -194.91 -2.02 -22.32 16 22 C 0.15 6.29 8.96 84.97 0.76 7.05 16 23 N -0.30 -9.85 12.48 -44.51 -0.56 -10.41 16 24 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.12 1.01 8.13 -2.39 -0.02 0.99 16 27 H 0.21 5.25 7.48 -2.91 -0.02 5.23 16 28 H 0.40 18.99 6.85 -92.71 -0.63 18.35 16 29 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.14 7.17 5.69 -2.91 -0.02 7.15 16 Total: -1.00 -75.94 296.38 3.68 -72.27 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.53 Total: 29.39 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.55 Total: 11.25 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -5.38 Total: -122.37 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.05 Total: -35.42 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -75.94 3.68 -72.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115932106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.783 kcal (2) G-P(sol) polarization free energy of solvation -75.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds