Wall clock time and date at job start Mon Mar 30 2020 01:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00195 * 2 1 4 4 H 1.48501 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47199 * 299.99797 * 3 2 1 6 6 H 1.48497 * 109.47121 * 59.99865 * 3 2 1 7 7 C 1.37875 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.34234 * 117.00248 * 179.97438 * 12 11 10 14 14 O 1.20826 * 119.99730 * 0.02562 * 13 12 11 15 15 C 1.50692 * 119.99974 * 180.02562 * 13 12 11 16 16 C 1.47203 * 109.46900 * 180.02562 * 15 13 12 17 17 C 9.57122 * 117.08449 * 179.97438 * 7 1 2 18 18 C 9.46904 * 149.51175 * 179.97438 * 9 1 2 19 19 C 1.39535 * 120.13986 * 131.51491 * 18 17 16 20 20 C 1.37972 * 119.85845 * 179.97438 * 19 18 17 21 21 C 1.38346 * 120.13996 * 359.97438 * 20 19 18 22 22 C 1.38346 * 120.28578 * 0.02562 * 21 20 19 23 23 C 1.37972 * 120.14050 * 359.97438 * 22 21 20 24 24 H 0.97009 * 119.99873 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46946 * 59.99827 * 9 7 2 26 26 H 1.09005 * 109.47273 * 300.00269 * 9 7 2 27 27 H 1.08999 * 109.46707 * 60.00443 * 10 9 7 28 28 H 1.08999 * 109.47256 * 299.99871 * 10 9 7 29 29 H 1.09006 * 109.46948 * 59.99990 * 11 10 9 30 30 H 1.09005 * 109.47411 * 300.00347 * 11 10 9 31 31 H 1.08999 * 109.47631 * 60.00466 * 15 13 12 32 32 H 1.08996 * 109.47410 * 300.00012 * 15 13 12 33 33 H 1.08007 * 120.07409 * 359.69681 * 19 18 17 34 34 H 1.08000 * 119.92892 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.85471 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.92423 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.06529 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4235 -6.0908 0.0006 13 6 1.9105 -7.3312 0.0016 14 8 0.7126 -7.4894 0.0024 15 6 2.8284 -8.5262 0.0016 16 6 2.0266 -9.7608 0.0021 17 6 1.3872 -10.7453 0.0086 18 6 0.6072 -11.9463 0.0047 19 6 0.8977 -12.9674 -0.9008 20 6 0.1427 -14.1223 -0.8991 21 6 -0.9000 -14.2692 -0.0019 22 6 -1.1932 -13.2605 0.8984 23 6 -0.4458 -12.1008 0.9070 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.8531 -5.0451 -0.8886 30 1 0.8536 -5.0446 0.8914 31 1 3.4578 -8.5010 0.8911 32 1 3.4567 -8.5019 -0.8888 33 1 1.7089 -12.8523 -1.6045 34 1 0.3668 -14.9135 -1.5992 35 1 -1.4883 -15.1750 -0.0049 36 1 -2.0083 -13.3816 1.5966 37 1 -0.6760 -11.3139 1.6101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116272941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:11 Heat of formation + Delta-G solvation = -33.844040 kcal Electronic energy + Delta-G solvation = -18113.685010 eV Core-core repulsion = 15014.647949 eV Total energy + Delta-G solvation = -3099.037061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28222 -39.42965 -36.64661 -34.59589 -34.00890 -32.09363 -31.58303 -31.29749 -28.92984 -26.94530 -23.69225 -23.06203 -22.84007 -21.12306 -20.35287 -18.45772 -17.57081 -16.70251 -16.58776 -16.40933 -15.87681 -15.33137 -14.94586 -14.59870 -14.47068 -13.91007 -13.78795 -13.57139 -13.23364 -13.10915 -12.22190 -12.06417 -11.87636 -11.78213 -11.60541 -11.16962 -10.99704 -10.67277 -10.65612 -10.48486 -10.41697 -10.24464 -9.74169 -9.52360 -9.31769 -9.16136 -8.76042 -8.40131 -6.04582 -4.07662 0.59573 1.04520 2.16725 2.27080 2.56813 3.09889 3.29466 3.36932 3.41191 3.71362 3.76602 4.42634 4.60421 4.60877 4.72359 4.81376 5.03044 5.05982 5.08465 5.18324 5.23584 5.31467 5.56056 5.60373 5.66818 5.68267 5.99178 6.06110 6.13481 6.16795 6.45390 6.52306 6.58612 6.81514 6.96641 7.28791 7.59314 7.69865 7.86689 7.93859 8.34696 8.98898 9.56752 11.06878 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.052032 B = 0.002108 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.997605 B =13282.387360 C =13649.231415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.356 6.356 13 C 0.458 3.542 14 O -0.503 6.503 15 C 0.004 3.996 16 C -0.145 4.145 17 C -0.122 4.122 18 C 0.019 3.981 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.093 4.093 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 -27.874 0.043 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.273 6.273 13 C 0.300 3.700 14 O -0.391 6.391 15 C -0.032 4.032 16 C -0.145 4.145 17 C -0.122 4.122 18 C 0.019 3.981 19 C -0.115 4.115 20 C -0.139 4.139 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.111 4.111 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.407 -27.749 0.042 27.853 hybrid contribution 0.198 1.031 -0.011 1.050 sum 2.605 -26.717 0.031 26.844 Atomic orbital electron populations 1.69981 1.06092 1.26661 1.50604 1.25042 0.94894 0.99416 0.95213 0.86480 0.80073 0.83522 0.77599 1.19663 1.20976 1.20981 1.21209 0.93171 0.90648 1.50890 0.92335 1.19067 0.93865 0.90773 0.97717 1.21774 0.99943 0.90902 1.02036 1.23544 0.91188 0.83424 1.02274 1.86476 1.42699 1.14911 1.83179 1.23196 0.88445 0.84977 0.73396 1.90700 1.16943 1.86801 1.44644 1.18130 0.94986 0.82857 1.07268 1.21113 0.98824 0.94311 1.00278 1.19011 0.96823 0.94465 1.01928 1.15896 0.94924 0.89746 0.97564 1.21243 0.99694 0.92795 0.97807 1.21089 0.95901 0.97564 0.99327 1.21295 0.97388 0.99033 0.95442 1.21121 0.99797 0.93483 0.99314 1.21304 0.94089 0.97879 0.97829 0.92939 0.96217 0.96210 0.92071 0.92061 0.91432 0.91424 0.85115 0.85136 0.85542 0.85501 0.85733 0.85418 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 11 C 0.07 1.26 5.47 37.16 0.20 1.46 16 12 O -0.36 -5.73 10.22 -39.27 -0.40 -6.13 16 13 C 0.46 6.81 7.94 36.00 0.29 7.10 16 14 O -0.50 -9.34 15.78 -18.75 -0.30 -9.64 16 15 C 0.00 0.04 6.30 -30.67 -0.19 -0.15 16 16 C -0.15 -1.79 12.58 -37.12 -0.47 -2.26 16 17 C -0.12 -1.56 13.24 -38.84 -0.51 -2.07 16 18 C 0.02 0.21 5.72 -107.01 -0.61 -0.40 16 19 C -0.10 -0.88 9.75 -39.20 -0.38 -1.27 16 20 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 21 C -0.11 -0.81 10.04 -39.50 -0.40 -1.20 16 22 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 23 C -0.09 -0.94 9.75 -39.20 -0.38 -1.32 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 30 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 31 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -33.51 337.54 -8.88 -42.39 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -5.04 Total: -3.96 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -3.95 Total: -18.16 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.70 Total: -15.76 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.51 -8.88 -42.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116272941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.551 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds