Wall clock time and date at job start Mon Mar 30 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00195 * 2 1 4 4 H 1.48501 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47199 * 299.99797 * 3 2 1 6 6 H 1.48497 * 109.47121 * 59.99865 * 3 2 1 7 7 C 1.37875 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.34234 * 117.00248 * 179.97438 * 12 11 10 14 14 O 1.20826 * 119.99730 * 0.02562 * 13 12 11 15 15 C 1.50692 * 119.99974 * 180.02562 * 13 12 11 16 16 C 1.47203 * 109.46900 * 180.02562 * 15 13 12 17 17 C 9.57122 * 117.08449 * 179.97438 * 7 1 2 18 18 C 9.46904 * 149.51175 * 179.97438 * 9 1 2 19 19 C 1.39535 * 120.13986 * 131.51491 * 18 17 16 20 20 C 1.37972 * 119.85845 * 179.97438 * 19 18 17 21 21 C 1.38346 * 120.13996 * 359.97438 * 20 19 18 22 22 C 1.38346 * 120.28578 * 0.02562 * 21 20 19 23 23 C 1.37972 * 120.14050 * 359.97438 * 22 21 20 24 24 H 0.97009 * 119.99873 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46946 * 59.99827 * 9 7 2 26 26 H 1.09005 * 109.47273 * 300.00269 * 9 7 2 27 27 H 1.08999 * 109.46707 * 60.00443 * 10 9 7 28 28 H 1.08999 * 109.47256 * 299.99871 * 10 9 7 29 29 H 1.09006 * 109.46948 * 59.99990 * 11 10 9 30 30 H 1.09005 * 109.47411 * 300.00347 * 11 10 9 31 31 H 1.08999 * 109.47631 * 60.00466 * 15 13 12 32 32 H 1.08996 * 109.47410 * 300.00012 * 15 13 12 33 33 H 1.08007 * 120.07409 * 359.69681 * 19 18 17 34 34 H 1.08000 * 119.92892 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.85471 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.92423 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.06529 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4235 -6.0908 0.0006 13 6 1.9105 -7.3312 0.0016 14 8 0.7126 -7.4894 0.0024 15 6 2.8284 -8.5262 0.0016 16 6 2.0266 -9.7608 0.0021 17 6 1.3872 -10.7453 0.0086 18 6 0.6072 -11.9463 0.0047 19 6 0.8977 -12.9674 -0.9008 20 6 0.1427 -14.1223 -0.8991 21 6 -0.9000 -14.2692 -0.0019 22 6 -1.1932 -13.2605 0.8984 23 6 -0.4458 -12.1008 0.9070 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.8531 -5.0451 -0.8886 30 1 0.8536 -5.0446 0.8914 31 1 3.4578 -8.5010 0.8911 32 1 3.4567 -8.5019 -0.8888 33 1 1.7089 -12.8523 -1.6045 34 1 0.3668 -14.9135 -1.5992 35 1 -1.4883 -15.1750 -0.0049 36 1 -2.0083 -13.3816 1.5966 37 1 -0.6760 -11.3139 1.6101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116272941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:10 Heat of formation + Delta-G solvation = -50.758532 kcal Electronic energy + Delta-G solvation = -18114.418478 eV Core-core repulsion = 15014.647949 eV Total energy + Delta-G solvation = -3099.770529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56898 -40.06979 -38.00802 -35.94700 -35.48106 -33.73484 -32.68255 -31.92337 -29.92063 -28.71724 -25.35667 -24.01048 -23.46838 -22.34876 -22.16788 -19.21080 -18.88107 -18.46292 -17.88309 -17.51575 -16.92710 -16.49886 -16.07444 -15.88967 -15.73139 -14.76507 -14.62699 -14.55794 -14.38506 -14.15275 -14.02213 -13.72185 -13.60466 -12.85353 -12.50922 -12.39452 -12.36764 -12.26814 -12.10307 -12.02832 -11.79520 -11.46372 -11.42469 -11.24842 -11.09985 -10.58653 -9.95502 -9.48182 -8.22403 -6.33978 -0.12171 0.40981 1.08497 1.16158 1.41809 1.41877 1.55689 1.68127 2.10128 2.41486 2.94551 2.97394 3.11630 3.67363 3.98527 4.00058 4.02580 4.05086 4.18194 4.27757 4.39106 4.40472 4.44608 4.51270 4.61158 4.79544 4.86287 5.02745 5.06865 5.07744 5.38220 5.44581 5.49328 5.51085 5.52462 5.63149 5.79841 5.98081 6.18365 6.39920 6.62900 6.82570 7.35732 8.90062 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.052032 B = 0.002108 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.997605 B =13282.387360 C =13649.231415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.349 6.349 13 C 0.458 3.542 14 O -0.546 6.546 15 C 0.016 3.984 16 C -0.165 4.165 17 C -0.141 4.141 18 C -0.016 4.016 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.114 4.114 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -29.240 -0.249 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.131 4.131 11 C 0.004 3.996 12 O -0.266 6.266 13 C 0.302 3.698 14 O -0.436 6.436 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.141 4.141 18 C -0.016 4.016 19 C -0.123 4.123 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.141 4.141 23 C -0.132 4.132 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.184 0.816 32 H 0.185 0.815 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.046 -29.135 -0.248 29.415 hybrid contribution -0.370 1.318 0.076 1.371 sum 3.677 -27.817 -0.172 28.060 Atomic orbital electron populations 1.70117 1.07932 1.27858 1.51587 1.26044 0.95811 1.03647 0.94650 0.85310 0.79152 0.78356 0.77694 1.18222 1.20458 1.20467 1.21664 0.93832 0.91783 1.50639 0.91463 1.18960 0.94348 0.92658 0.95393 1.21462 0.98686 0.90094 1.02849 1.23148 0.91014 0.83724 1.01724 1.86463 1.41676 1.15062 1.83359 1.24212 0.88700 0.85270 0.71569 1.90694 1.19140 1.87095 1.46704 1.18381 0.93853 0.79111 1.10606 1.21693 0.99509 0.95003 1.00348 1.19693 0.96787 0.95287 1.02372 1.16196 0.95904 0.90276 0.99232 1.21461 1.00353 0.92959 0.97543 1.21478 0.95264 0.97471 0.99559 1.21718 0.97109 0.99610 0.94287 1.21418 0.99885 0.92870 0.99908 1.21406 0.94829 0.98838 0.98102 0.92713 0.98606 0.98589 0.91162 0.91154 0.92108 0.92075 0.81551 0.81482 0.84606 0.82625 0.82661 0.83366 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.25 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.82 5.53 30.60 0.17 -3.65 16 11 C 0.08 2.87 5.47 71.98 0.39 3.26 16 12 O -0.35 -10.84 10.22 -51.45 -0.53 -11.37 16 13 C 0.46 13.28 7.94 71.23 0.57 13.84 16 14 O -0.55 -20.67 15.78 21.96 0.35 -20.32 16 15 C 0.02 0.29 6.30 28.04 0.18 0.46 16 16 C -0.17 -4.03 12.58 31.13 0.39 -3.63 16 17 C -0.14 -3.69 13.24 30.02 0.40 -3.29 16 18 C -0.02 -0.37 5.72 -21.41 -0.12 -0.49 16 19 C -0.11 -1.84 9.75 22.52 0.22 -1.62 16 20 C -0.12 -1.52 10.03 22.23 0.22 -1.30 16 21 C -0.11 -1.30 10.04 22.32 0.22 -1.08 16 22 C -0.12 -1.84 10.03 22.23 0.22 -1.62 16 23 C -0.11 -2.37 9.75 22.52 0.22 -2.15 16 24 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 25 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 26 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.06 2.32 8.13 -2.38 -0.02 2.30 16 30 H 0.06 2.33 8.13 -2.38 -0.02 2.31 16 31 H 0.17 1.82 8.14 -2.39 -0.02 1.81 16 32 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -74.47 337.54 7.11 -67.35 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.06 Total: 5.14 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 3.92 Total: -29.97 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.28 Total: -56.87 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.18 Total: -31.69 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.47 7.11 -67.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116272941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.596 kcal (2) G-P(sol) polarization free energy of solvation -74.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds