Wall clock time and date at job start Mon Mar 30 2020 00:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47106 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47098 * 120.00058 * 3 2 1 6 6 H 1.48506 * 109.47095 * 240.00078 * 3 2 1 7 7 C 1.40018 * 119.99733 * 179.72624 * 2 1 3 8 8 H 1.08007 * 120.00237 * 356.31919 * 7 2 1 9 9 C 1.41313 * 120.00090 * 176.31954 * 7 2 1 10 10 C 1.40589 * 119.78714 * 186.43736 * 9 7 2 11 11 C 1.38354 * 119.14885 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.67757 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49467 * 0.02562 * 12 11 10 14 14 N 1.38823 * 119.58251 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00417 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47403 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47038 * 64.99850 * 16 15 14 18 18 C 1.42901 * 113.99914 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47001 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.47241 * 300.00293 * 19 18 17 21 21 F 1.39909 * 109.47083 * 60.00249 * 19 18 17 22 22 N 1.31976 * 120.83264 * 359.72501 * 13 12 11 23 23 H 0.96995 * 120.00445 * 175.19866 * 1 2 3 24 24 H 1.08000 * 120.42414 * 359.97296 * 10 9 7 25 25 H 1.07998 * 120.66057 * 180.02562 * 11 10 9 26 26 H 1.07999 * 120.25051 * 179.97438 * 12 11 10 27 27 H 0.97000 * 119.99931 * 180.02562 * 14 13 12 28 28 H 1.09002 * 109.46975 * 300.00205 * 15 14 13 29 29 H 1.09001 * 109.47095 * 59.99453 * 15 14 13 30 30 H 1.08998 * 109.47408 * 184.99709 * 16 15 14 31 31 H 1.08997 * 109.46957 * 304.99905 * 16 15 14 32 32 H 1.08997 * 109.47331 * 299.99827 * 18 17 16 33 33 H 1.09004 * 109.47172 * 60.00472 * 18 17 16 34 34 H 1.09003 * 109.47087 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0952 1.6964 1.2124 6 1 3.0952 1.6964 -1.2126 7 6 2.0075 -1.2126 0.0058 8 1 1.4691 -2.1467 0.0703 9 6 3.4185 -1.2143 -0.0728 10 6 4.1092 -2.4319 -0.2034 11 6 5.4906 -2.4182 -0.2786 12 6 6.1479 -1.1989 -0.2228 13 6 5.4052 -0.0222 -0.0924 14 7 6.0616 1.1998 -0.0358 15 6 7.5237 1.2503 -0.1132 16 6 7.9889 2.7054 -0.0289 17 8 7.6598 3.2369 1.2561 18 6 8.0538 4.5982 1.4402 19 6 7.6531 5.0598 2.8428 20 9 6.2662 4.9516 2.9909 21 9 8.2880 4.2574 3.7970 22 7 4.0876 -0.0577 -0.0273 23 1 -0.4850 -0.8370 -0.0703 24 1 3.5684 -3.3659 -0.2436 25 1 6.0458 -3.3391 -0.3796 26 1 7.2257 -1.1587 -0.2788 27 1 5.5521 2.0202 0.0550 28 1 7.9511 0.6832 0.7138 29 1 7.8526 0.8182 -1.0583 30 1 9.0681 2.7509 -0.1753 31 1 7.4923 3.2910 -0.8024 32 1 9.1343 4.6825 1.3244 33 1 7.5588 5.2234 0.6971 34 1 7.9533 6.0982 2.9831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116733277.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:21 Heat of formation + Delta-G solvation = -129.095023 kcal Electronic energy + Delta-G solvation = -20539.683502 eV Core-core repulsion = 16914.579269 eV Total energy + Delta-G solvation = -3625.104233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.00443 -47.04349 -38.88361 -38.20039 -35.31143 -33.46838 -31.30471 -30.83635 -29.50257 -27.51462 -25.24833 -23.17072 -22.75538 -21.77900 -20.22905 -18.27592 -18.03450 -17.61491 -17.04560 -16.53976 -16.25927 -15.89616 -15.26234 -14.50291 -14.14734 -14.04336 -13.80025 -13.55842 -13.53462 -13.39297 -12.80225 -12.63088 -12.38945 -12.31863 -12.02562 -11.70639 -11.34772 -11.11546 -10.62504 -10.58642 -10.18686 -10.01678 -9.53663 -9.45091 -8.89716 -8.40019 -7.61147 -7.13126 -6.80421 -4.69788 2.74979 2.89514 3.06251 3.67175 3.68357 3.79702 3.87488 3.96160 4.15235 4.23670 4.55088 4.62950 4.76491 4.89308 4.95302 5.03938 5.14463 5.18731 5.60895 5.74280 5.85620 5.92678 6.34486 6.55741 6.64930 6.68590 6.76882 7.31932 7.51361 7.54718 7.66977 7.96159 8.08891 8.37062 8.54810 8.80975 9.67219 10.09978 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.005490 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.415520 B = 5098.896163 C = 6148.034940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.045 3.955 3 Si 1.161 2.839 4 H -0.339 1.339 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.476 4.476 8 H 0.082 0.918 9 C 0.287 3.713 10 C -0.307 4.307 11 C -0.017 4.017 12 C -0.367 4.367 13 C 0.443 3.557 14 N -0.737 5.737 15 C 0.142 3.858 16 C 0.051 3.949 17 O -0.369 6.369 18 C 0.008 3.992 19 C 0.270 3.730 20 F -0.195 7.195 21 F -0.200 7.200 22 N -0.620 5.620 23 H 0.282 0.718 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.398 0.602 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.354 10.796 0.653 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.176 4.176 3 Si 0.998 3.002 4 H -0.274 1.274 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.508 4.508 8 H 0.100 0.900 9 C 0.163 3.837 10 C -0.330 4.330 11 C -0.040 4.040 12 C -0.393 4.393 13 C 0.206 3.794 14 N -0.373 5.373 15 C 0.016 3.984 16 C -0.026 4.026 17 O -0.288 6.288 18 C -0.070 4.070 19 C 0.217 3.783 20 F -0.177 7.177 21 F -0.182 7.182 22 N -0.349 5.349 23 H 0.093 0.907 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.232 0.768 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.666 12.817 0.945 21.045 hybrid contribution 0.521 -2.336 -0.221 2.404 sum 17.187 10.481 0.724 20.143 Atomic orbital electron populations 1.70660 1.08226 1.32624 1.31545 1.27815 0.95263 1.06309 0.88236 0.81655 0.70184 0.69202 0.79121 1.27354 1.21571 1.22022 1.20751 0.90472 0.96221 1.43357 0.90031 1.18264 0.93297 0.86085 0.86018 1.21385 0.93815 0.97945 1.19808 1.20695 0.94111 0.95835 0.93408 1.20443 0.97924 0.92013 1.28919 1.18048 0.88361 0.84853 0.88176 1.44170 1.04357 1.06190 1.82618 1.21173 0.81860 0.93653 1.01695 1.22886 0.99580 0.95241 0.84852 1.88096 1.81882 1.24438 1.34353 1.23669 1.01107 0.86333 0.95908 1.21997 0.74944 0.94911 0.86486 1.93055 1.31072 1.97272 1.96274 1.93014 1.81602 1.76930 1.66639 1.65766 1.06510 1.29014 1.33608 0.90714 0.88151 0.88205 0.88235 0.76775 0.91542 0.90810 0.91581 0.92204 0.90346 0.90159 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.99 13.65 55.55 0.76 -22.23 16 2 C 0.04 1.28 5.52 -17.35 -0.10 1.18 16 3 Si 1.16 30.25 25.45 -169.99 -4.33 25.93 16 4 H -0.34 -8.71 7.11 56.52 0.40 -8.31 16 5 H -0.29 -7.64 6.97 56.52 0.39 -7.24 16 6 H -0.29 -7.52 6.91 56.52 0.39 -7.13 16 7 C -0.48 -13.63 9.57 -37.75 -0.36 -13.99 16 8 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 9 C 0.29 7.93 6.42 -85.00 -0.55 7.39 16 10 C -0.31 -7.62 9.83 -38.65 -0.38 -8.00 16 11 C -0.02 -0.37 10.15 -39.39 -0.40 -0.76 16 12 C -0.37 -7.98 9.34 -38.87 -0.36 -8.34 16 13 C 0.44 10.41 7.65 -155.32 -1.19 9.23 16 14 N -0.74 -14.30 5.67 -60.40 -0.34 -14.64 16 15 C 0.14 1.98 5.27 -4.04 -0.02 1.96 16 16 C 0.05 0.54 6.07 37.16 0.23 0.77 16 17 O -0.37 -4.78 10.18 -35.23 -0.36 -5.14 16 18 C 0.01 0.07 6.16 37.16 0.23 0.29 16 19 C 0.27 2.50 5.63 37.16 0.21 2.71 16 20 F -0.20 -2.64 17.28 2.25 0.04 -2.60 16 21 F -0.20 -2.45 17.28 2.25 0.04 -2.41 16 22 N -0.62 -16.62 4.55 -10.33 -0.05 -16.67 16 23 H 0.28 7.64 8.72 -40.82 -0.36 7.28 16 24 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 25 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 26 H 0.10 1.85 6.68 -52.49 -0.35 1.50 16 27 H 0.40 7.84 8.59 -40.82 -0.35 7.49 16 28 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 29 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -34.00 301.37 -6.46 -40.47 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.08 Total: 0.34 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -2.69 Total: -7.58 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.37 Total: -53.54 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.36 Total: -5.14 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.08 Total: -5.01 kcal Atomic # 14 Polarization: 30.25 SS G_CDS: -4.33 Total: 25.93 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.00 -6.46 -40.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116733277.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.627 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds