Wall clock time and date at job start Mon Mar 30 2020 00:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47106 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47098 * 120.00058 * 3 2 1 6 6 H 1.48506 * 109.47095 * 240.00078 * 3 2 1 7 7 C 1.40018 * 119.99733 * 179.72624 * 2 1 3 8 8 H 1.08007 * 120.00237 * 356.31919 * 7 2 1 9 9 C 1.41313 * 120.00090 * 176.31954 * 7 2 1 10 10 C 1.40589 * 119.78714 * 186.43736 * 9 7 2 11 11 C 1.38354 * 119.14885 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.67757 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49467 * 0.02562 * 12 11 10 14 14 N 1.38823 * 119.58251 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00417 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47403 * 179.97438 * 15 14 13 17 17 O 1.42899 * 109.47038 * 64.99850 * 16 15 14 18 18 C 1.42901 * 113.99914 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47001 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.47241 * 300.00293 * 19 18 17 21 21 F 1.39909 * 109.47083 * 60.00249 * 19 18 17 22 22 N 1.31976 * 120.83264 * 359.72501 * 13 12 11 23 23 H 0.96995 * 120.00445 * 175.19866 * 1 2 3 24 24 H 1.08000 * 120.42414 * 359.97296 * 10 9 7 25 25 H 1.07998 * 120.66057 * 180.02562 * 11 10 9 26 26 H 1.07999 * 120.25051 * 179.97438 * 12 11 10 27 27 H 0.97000 * 119.99931 * 180.02562 * 14 13 12 28 28 H 1.09002 * 109.46975 * 300.00205 * 15 14 13 29 29 H 1.09001 * 109.47095 * 59.99453 * 15 14 13 30 30 H 1.08998 * 109.47408 * 184.99709 * 16 15 14 31 31 H 1.08997 * 109.46957 * 304.99905 * 16 15 14 32 32 H 1.08997 * 109.47331 * 299.99827 * 18 17 16 33 33 H 1.09004 * 109.47172 * 60.00472 * 18 17 16 34 34 H 1.09003 * 109.47087 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0952 1.6964 1.2124 6 1 3.0952 1.6964 -1.2126 7 6 2.0075 -1.2126 0.0058 8 1 1.4691 -2.1467 0.0703 9 6 3.4185 -1.2143 -0.0728 10 6 4.1092 -2.4319 -0.2034 11 6 5.4906 -2.4182 -0.2786 12 6 6.1479 -1.1989 -0.2228 13 6 5.4052 -0.0222 -0.0924 14 7 6.0616 1.1998 -0.0358 15 6 7.5237 1.2503 -0.1132 16 6 7.9889 2.7054 -0.0289 17 8 7.6598 3.2369 1.2561 18 6 8.0538 4.5982 1.4402 19 6 7.6531 5.0598 2.8428 20 9 6.2662 4.9516 2.9909 21 9 8.2880 4.2574 3.7970 22 7 4.0876 -0.0577 -0.0273 23 1 -0.4850 -0.8370 -0.0703 24 1 3.5684 -3.3659 -0.2436 25 1 6.0458 -3.3391 -0.3796 26 1 7.2257 -1.1587 -0.2788 27 1 5.5521 2.0202 0.0550 28 1 7.9511 0.6832 0.7138 29 1 7.8526 0.8182 -1.0583 30 1 9.0681 2.7509 -0.1753 31 1 7.4923 3.2910 -0.8024 32 1 9.1343 4.6825 1.3244 33 1 7.5588 5.2234 0.6971 34 1 7.9533 6.0982 2.9831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116733277.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:21 Heat of formation + Delta-G solvation = -152.455316 kcal Electronic energy + Delta-G solvation = -20540.696480 eV Core-core repulsion = 16914.579269 eV Total energy + Delta-G solvation = -3626.117211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.81787 -47.89398 -40.61020 -39.17254 -36.84459 -35.41534 -33.01023 -32.21964 -30.68982 -28.83245 -27.18676 -23.99438 -23.79670 -23.59793 -21.97947 -20.31584 -18.79198 -18.48262 -18.30519 -17.57654 -17.30841 -17.00050 -16.68054 -16.21061 -15.78667 -15.38514 -15.27592 -14.90671 -14.74220 -14.32024 -14.27224 -14.20328 -13.96942 -13.59804 -13.31965 -13.09499 -12.65797 -12.43231 -12.25920 -12.11306 -11.79212 -11.59644 -11.41832 -10.78721 -10.72186 -10.29769 -9.66822 -9.20515 -8.54677 -6.79455 0.79810 1.03567 1.56345 1.72549 2.00896 2.36373 2.46344 2.53025 2.70459 3.03257 3.42041 3.62680 3.66566 3.89303 4.14825 4.18422 4.26006 4.36015 4.43649 4.55357 4.57123 4.72030 4.75046 4.81815 4.84166 4.97182 5.39819 5.48739 5.70434 5.85008 5.97755 6.05139 6.20073 6.57024 6.60647 6.89567 7.74051 7.97962 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.005490 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.415520 B = 5098.896163 C = 6148.034940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.017 3.983 3 Si 1.202 2.798 4 H -0.337 1.337 5 H -0.301 1.301 6 H -0.291 1.291 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.271 3.729 10 C -0.332 4.332 11 C -0.008 4.008 12 C -0.347 4.347 13 C 0.421 3.579 14 N -0.734 5.734 15 C 0.131 3.869 16 C 0.055 3.945 17 O -0.412 6.412 18 C 0.003 3.997 19 C 0.253 3.747 20 F -0.226 7.226 21 F -0.222 7.222 22 N -0.645 5.645 23 H 0.280 0.720 24 H 0.104 0.896 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.393 0.607 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.347 11.744 -0.070 24.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.200 4.200 3 Si 1.038 2.962 4 H -0.272 1.272 5 H -0.230 1.230 6 H -0.219 1.219 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.146 3.854 10 C -0.354 4.354 11 C -0.031 4.031 12 C -0.372 4.372 13 C 0.183 3.817 14 N -0.369 5.369 15 C 0.008 3.992 16 C -0.021 4.021 17 O -0.332 6.332 18 C -0.074 4.074 19 C 0.200 3.800 20 F -0.208 7.208 21 F -0.204 7.204 22 N -0.375 5.375 23 H 0.091 0.909 24 H 0.122 0.878 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.227 0.773 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 20.708 13.787 0.213 24.879 hybrid contribution -0.371 -2.652 0.011 2.678 sum 20.337 11.135 0.224 23.187 Atomic orbital electron populations 1.70667 1.08404 1.32521 1.34239 1.28455 0.95601 1.07849 0.88050 0.81072 0.69191 0.67665 0.78304 1.27192 1.22980 1.21916 1.20730 0.91601 0.95710 1.46753 0.91654 1.18434 0.93190 0.87596 0.86174 1.21535 0.95479 0.97183 1.21253 1.21185 0.93052 0.97908 0.91002 1.20980 0.99953 0.91073 1.25176 1.18587 0.87762 0.87241 0.88081 1.44512 1.06603 1.04585 1.81167 1.21579 0.78387 0.96667 1.02607 1.22931 1.01807 0.92945 0.84418 1.88031 1.82868 1.26893 1.35421 1.23957 1.03337 0.84530 0.95552 1.22867 0.73129 0.97322 0.86643 1.92989 1.33830 1.97514 1.96462 1.92963 1.81821 1.77910 1.67656 1.65642 1.08507 1.29035 1.34292 0.90916 0.87764 0.83739 0.84134 0.77297 0.91834 0.88586 0.87668 0.91279 0.86997 0.88242 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.39 13.65 21.84 0.30 -49.09 16 2 C 0.02 0.98 5.52 85.29 0.47 1.45 16 3 Si 1.20 63.39 25.45 68.60 1.75 65.13 16 4 H -0.34 -17.34 7.11 99.48 0.71 -16.63 16 5 H -0.30 -16.24 6.97 99.48 0.69 -15.55 16 6 H -0.29 -14.97 6.91 99.48 0.69 -14.28 16 7 C -0.51 -30.78 9.57 23.46 0.22 -30.56 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 9 C 0.27 15.18 6.42 40.19 0.26 15.44 16 10 C -0.33 -16.24 9.83 22.87 0.22 -16.01 16 11 C -0.01 -0.31 10.15 22.39 0.23 -0.08 16 12 C -0.35 -13.68 9.34 22.73 0.21 -13.47 16 13 C 0.42 18.94 7.65 133.40 1.02 19.96 16 14 N -0.73 -26.77 5.67 -345.00 -1.96 -28.73 16 15 C 0.13 3.16 5.27 86.38 0.46 3.61 16 16 C 0.05 0.95 6.07 71.98 0.44 1.38 16 17 O -0.41 -9.54 10.18 -148.98 -1.52 -11.06 16 18 C 0.00 0.04 6.16 71.98 0.44 0.49 16 19 C 0.25 4.11 5.63 71.98 0.41 4.51 16 20 F -0.23 -5.97 17.28 44.97 0.78 -5.19 16 21 F -0.22 -5.12 17.28 44.97 0.78 -4.34 16 22 N -0.64 -34.43 4.55 -186.59 -0.85 -35.28 16 23 H 0.28 15.99 8.72 -92.71 -0.81 15.18 16 24 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 25 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 26 H 0.14 4.39 6.68 -2.91 -0.02 4.37 16 27 H 0.39 14.96 8.59 -92.71 -0.80 14.16 16 28 H 0.06 1.59 7.92 -2.39 -0.02 1.57 16 29 H 0.10 1.91 7.92 -2.39 -0.02 1.89 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.18 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -77.22 301.37 3.91 -73.31 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.26 Total: 8.53 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.38 Total: -13.28 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -2.51 Total: -113.09 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.52 Total: -11.06 kcal Atomic # 9 Polarization: -11.08 SS G_CDS: 1.55 Total: -9.53 kcal Atomic # 14 Polarization: 63.39 SS G_CDS: 1.75 Total: 65.13 kcal Total: -77.22 3.91 -73.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116733277.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.149 kcal (2) G-P(sol) polarization free energy of solvation -77.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds