Wall clock time and date at job start Mon Mar 30 2020 00:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48502 * 109.47192 * 269.99799 * 3 2 1 5 5 H 1.48506 * 109.47162 * 29.99809 * 3 2 1 6 6 H 1.48496 * 109.47063 * 150.00011 * 3 2 1 7 7 C 1.37875 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99783 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00018 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46698 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99377 * 179.97438 * 10 9 7 12 12 O 1.21572 * 120.00211 * 0.02562 * 11 10 9 13 13 C 1.47702 * 119.99779 * 180.02562 * 11 10 9 14 14 C 1.41553 * 126.43818 * 180.02562 * 13 11 10 15 15 C 1.35332 * 105.55913 * 179.97438 * 14 13 11 16 16 N 1.35906 * 107.11181 * 359.97438 * 15 14 13 17 17 C 1.39913 * 124.96299 * 180.02562 * 16 15 14 18 18 C 1.39325 * 120.85977 * 359.72015 * 17 16 15 19 19 C 1.38011 * 119.08518 * 180.27297 * 18 17 16 20 20 N 1.31933 * 120.82945 * 0.02562 * 19 18 17 21 21 C 1.31931 * 121.89119 * 359.97438 * 20 19 18 22 22 C 1.38015 * 120.83094 * 0.02562 * 21 20 19 23 23 N 1.28477 * 110.07404 * 0.26816 * 16 15 14 24 24 H 0.97005 * 120.00018 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47316 * 59.99899 * 9 7 2 26 26 H 1.08996 * 109.46935 * 299.99595 * 9 7 2 27 27 H 0.96997 * 120.00299 * 0.02562 * 10 9 7 28 28 H 1.08001 * 127.22604 * 359.97438 * 14 13 11 29 29 H 1.07999 * 126.44409 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.45598 * 0.25209 * 18 17 16 31 31 H 1.07993 * 119.58767 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.58764 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.46085 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8215 0.0024 12 8 6.1149 -1.8974 0.0021 13 6 5.8172 -4.2140 0.0029 14 6 7.1712 -4.6271 0.0037 15 6 7.1379 -5.9800 0.0046 16 7 5.8296 -6.3479 0.0049 17 6 5.3682 -7.6687 0.0064 18 6 6.2615 -8.7379 0.0017 19 6 5.7662 -10.0260 -0.0025 20 7 4.4661 -10.2505 -0.0026 21 6 3.5887 -9.2652 0.0018 22 6 4.0033 -7.9488 0.0061 23 7 5.0785 -5.3056 -0.0013 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.3695 -3.3125 0.0021 28 1 8.0470 -3.9952 0.0036 29 1 7.9907 -6.6427 0.0049 30 1 7.3270 -8.5610 0.0010 31 1 6.4513 -10.8607 -0.0065 32 1 2.5327 -9.4916 0.0020 33 1 3.2798 -7.1470 0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116847414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:06 Heat of formation + Delta-G solvation = 89.099931 kcal Electronic energy + Delta-G solvation = -19186.460375 eV Core-core repulsion = 16021.506972 eV Total energy + Delta-G solvation = -3164.953403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.08207 -40.36710 -38.70039 -34.64095 -34.36572 -32.39908 -32.01739 -30.83361 -30.53802 -28.03432 -25.09298 -24.25616 -22.86637 -21.49792 -21.34994 -19.75281 -18.96449 -17.57623 -16.47420 -16.38583 -16.26119 -16.21367 -15.27884 -15.12996 -14.53137 -14.23823 -14.15947 -14.02440 -13.83328 -13.46464 -12.89709 -12.34981 -12.24297 -12.17995 -11.12118 -10.99572 -10.97822 -10.76084 -10.06595 -9.98188 -9.69966 -9.60842 -9.47853 -9.46980 -8.90142 -8.77489 -8.18264 -6.20566 -4.23082 0.28180 0.63115 1.84026 2.02545 2.08367 3.27482 3.34145 3.37374 3.42245 3.77364 3.78568 3.99644 4.00880 4.25853 4.33957 4.55640 4.56385 4.73634 4.97970 5.14470 5.22588 5.27600 5.33861 5.47378 5.60684 5.67298 6.08580 6.24060 6.60202 6.78033 7.04681 7.14999 7.35828 7.49414 7.64965 8.13497 8.49050 8.72714 8.85213 9.38644 10.91356 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.003830 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.632672 B = 7309.890671 C = 8347.374953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.219 3.781 10 N -0.686 5.686 11 C 0.585 3.415 12 O -0.546 6.546 13 C 0.019 3.981 14 C -0.166 4.166 15 C -0.019 4.019 16 N -0.249 5.249 17 C 0.192 3.808 18 C -0.189 4.189 19 C 0.124 3.876 20 N -0.491 5.491 21 C 0.125 3.875 22 C -0.166 4.166 23 N -0.257 5.257 24 H 0.268 0.732 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.403 0.597 28 H 0.171 0.829 29 H 0.186 0.814 30 H 0.145 0.855 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.347 -19.494 0.042 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.099 0.901 9 C 0.097 3.903 10 N -0.333 5.333 11 C 0.367 3.633 12 O -0.423 6.423 13 C -0.145 4.145 14 C -0.193 4.193 15 C -0.158 4.158 16 N -0.031 5.031 17 C 0.092 3.908 18 C -0.211 4.211 19 C -0.033 4.033 20 N -0.200 5.200 21 C -0.031 4.031 22 C -0.187 4.187 23 N -0.088 5.088 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.238 0.762 28 H 0.188 0.812 29 H 0.203 0.797 30 H 0.163 0.837 31 H 0.184 0.816 32 H 0.186 0.814 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.277 -19.942 0.038 23.419 hybrid contribution 1.211 1.702 -0.018 2.089 sum 13.488 -18.240 0.021 22.686 Atomic orbital electron populations 1.69880 1.06212 1.27429 1.49361 1.24785 0.94799 0.99141 0.93843 0.86822 0.80615 0.83210 0.79088 1.19796 1.20874 1.18411 1.21076 0.88368 0.95345 1.53401 0.90139 1.19598 0.95480 0.78110 0.97111 1.46114 1.05200 1.11596 1.70435 1.16912 0.83449 0.84819 0.78146 1.90760 1.55856 1.43631 1.52007 1.22553 0.92234 0.93155 1.06517 1.21926 0.97638 0.93306 1.06421 1.23031 0.87417 0.96683 1.08626 1.42682 1.04636 1.03791 1.51943 1.17933 0.94201 0.80315 0.98336 1.21892 1.00791 0.92495 1.05952 1.22680 0.92083 0.94958 0.93622 1.67720 1.03064 1.36712 1.12514 1.22825 1.00233 0.87090 0.93000 1.22133 0.94315 0.99969 1.02330 1.73629 1.23437 0.92637 1.19139 0.92241 0.95287 0.95735 0.76199 0.81169 0.79677 0.83729 0.81608 0.81375 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.54 -15.12 9.83 -34.44 -0.34 -15.46 16 8 H 0.08 2.34 7.84 -52.48 -0.41 1.93 16 9 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 10 N -0.69 -14.87 5.55 -62.47 -0.35 -15.22 16 11 C 0.58 12.06 7.82 -12.39 -0.10 11.96 16 12 O -0.55 -12.65 16.92 5.30 0.09 -12.56 16 13 C 0.02 0.32 7.13 -82.75 -0.59 -0.27 16 14 C -0.17 -2.20 10.80 -39.35 -0.42 -2.63 16 15 C -0.02 -0.20 10.82 -16.78 -0.18 -0.39 16 16 N -0.25 -3.13 3.51 -10.37 -0.04 -3.16 16 17 C 0.19 2.02 6.70 -83.36 -0.56 1.46 16 18 C -0.19 -1.41 9.50 -39.26 -0.37 -1.78 16 19 C 0.12 0.89 11.17 -17.59 -0.20 0.69 16 20 N -0.49 -4.56 10.36 -13.32 -0.14 -4.69 16 21 C 0.13 1.10 11.17 -17.59 -0.20 0.90 16 22 C -0.17 -1.69 9.67 -39.26 -0.38 -2.07 16 23 N -0.26 -4.01 10.94 33.43 0.37 -3.64 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 26 H 0.02 0.63 7.57 -51.93 -0.39 0.24 16 27 H 0.40 8.15 8.04 -40.82 -0.33 7.82 16 28 H 0.17 1.98 8.06 -52.49 -0.42 1.55 16 29 H 0.19 1.06 7.04 -52.49 -0.37 0.69 16 30 H 0.14 0.65 6.78 -52.48 -0.36 0.30 16 31 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.16 1.66 7.74 -52.49 -0.41 1.26 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -34.14 298.74 -5.99 -40.13 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.07 Total: 3.71 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.46 Total: 0.00 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.62 Total: -52.53 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.14 -5.99 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.230 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds