Wall clock time and date at job start Mon Mar 30 2020 00:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00094 * 2 1 4 4 H 1.48502 * 109.47192 * 269.99799 * 3 2 1 5 5 H 1.48506 * 109.47162 * 29.99809 * 3 2 1 6 6 H 1.48496 * 109.47063 * 150.00011 * 3 2 1 7 7 C 1.37875 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99783 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00018 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46698 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99377 * 179.97438 * 10 9 7 12 12 O 1.21572 * 120.00211 * 0.02562 * 11 10 9 13 13 C 1.47702 * 119.99779 * 180.02562 * 11 10 9 14 14 C 1.41553 * 126.43818 * 180.02562 * 13 11 10 15 15 C 1.35332 * 105.55913 * 179.97438 * 14 13 11 16 16 N 1.35906 * 107.11181 * 359.97438 * 15 14 13 17 17 C 1.39913 * 124.96299 * 180.02562 * 16 15 14 18 18 C 1.39325 * 120.85977 * 359.72015 * 17 16 15 19 19 C 1.38011 * 119.08518 * 180.27297 * 18 17 16 20 20 N 1.31933 * 120.82945 * 0.02562 * 19 18 17 21 21 C 1.31931 * 121.89119 * 359.97438 * 20 19 18 22 22 C 1.38015 * 120.83094 * 0.02562 * 21 20 19 23 23 N 1.28477 * 110.07404 * 0.26816 * 16 15 14 24 24 H 0.97005 * 120.00018 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47316 * 59.99899 * 9 7 2 26 26 H 1.08996 * 109.46935 * 299.99595 * 9 7 2 27 27 H 0.96997 * 120.00299 * 0.02562 * 10 9 7 28 28 H 1.08001 * 127.22604 * 359.97438 * 14 13 11 29 29 H 1.07999 * 126.44409 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.45598 * 0.25209 * 18 17 16 31 31 H 1.07993 * 119.58767 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.58764 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.46085 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 5.3249 -2.8215 0.0024 12 8 6.1149 -1.8974 0.0021 13 6 5.8172 -4.2140 0.0029 14 6 7.1712 -4.6271 0.0037 15 6 7.1379 -5.9800 0.0046 16 7 5.8296 -6.3479 0.0049 17 6 5.3682 -7.6687 0.0064 18 6 6.2615 -8.7379 0.0017 19 6 5.7662 -10.0260 -0.0025 20 7 4.4661 -10.2505 -0.0026 21 6 3.5887 -9.2652 0.0018 22 6 4.0033 -7.9488 0.0061 23 7 5.0785 -5.3056 -0.0013 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.3695 -3.3125 0.0021 28 1 8.0470 -3.9952 0.0036 29 1 7.9907 -6.6427 0.0049 30 1 7.3270 -8.5610 0.0010 31 1 6.4513 -10.8607 -0.0065 32 1 2.5327 -9.4916 0.0020 33 1 3.2798 -7.1470 0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116847414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:06 Heat of formation + Delta-G solvation = 63.801850 kcal Electronic energy + Delta-G solvation = -19187.557382 eV Core-core repulsion = 16021.506972 eV Total energy + Delta-G solvation = -3166.050410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.08109 -41.08890 -40.33294 -36.27151 -35.51462 -34.45814 -32.76057 -31.73121 -31.58039 -29.90380 -26.32222 -24.98997 -24.25304 -22.98791 -22.28807 -21.28219 -19.84222 -19.21679 -18.03305 -17.41938 -17.16175 -17.08216 -16.82264 -16.26385 -16.12725 -15.81028 -15.04282 -14.84993 -14.79238 -14.70178 -14.46790 -14.17178 -14.02698 -13.11104 -12.83147 -12.71505 -12.10026 -11.93029 -11.89878 -11.70088 -11.31710 -10.93651 -10.70453 -10.44995 -10.30510 -10.11342 -9.76645 -8.41299 -6.49739 -0.52349 0.01462 0.62721 1.13596 1.20883 1.34109 1.35280 1.48708 2.26723 2.27349 2.30712 2.73179 2.93706 3.07102 3.47397 3.57838 3.69816 3.84379 4.02213 4.07202 4.43933 4.46025 4.59233 4.64614 4.73260 4.77874 4.91688 4.97509 5.17841 5.23183 5.36846 5.46710 5.79121 6.03503 6.46665 6.54676 6.78050 6.86988 7.07363 7.21988 8.73673 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.003830 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.632672 B = 7309.890671 C = 8347.374953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.552 4.552 8 H 0.054 0.946 9 C 0.231 3.769 10 N -0.692 5.692 11 C 0.587 3.413 12 O -0.576 6.576 13 C -0.017 4.017 14 C -0.180 4.180 15 C 0.010 3.990 16 N -0.243 5.243 17 C 0.160 3.840 18 C -0.169 4.169 19 C 0.126 3.874 20 N -0.507 5.507 21 C 0.122 3.878 22 C -0.183 4.183 23 N -0.279 5.279 24 H 0.274 0.726 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.408 0.592 28 H 0.183 0.817 29 H 0.243 0.757 30 H 0.184 0.816 31 H 0.205 0.795 32 H 0.185 0.815 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.133 -21.459 0.008 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.590 4.590 8 H 0.072 0.928 9 C 0.108 3.892 10 N -0.340 5.340 11 C 0.372 3.628 12 O -0.455 6.455 13 C -0.178 4.178 14 C -0.207 4.207 15 C -0.129 4.129 16 N -0.026 5.026 17 C 0.062 3.938 18 C -0.191 4.191 19 C -0.031 4.031 20 N -0.217 5.217 21 C -0.034 4.034 22 C -0.205 4.205 23 N -0.112 5.112 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.243 0.757 28 H 0.200 0.800 29 H 0.259 0.741 30 H 0.202 0.798 31 H 0.222 0.778 32 H 0.202 0.798 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.053 -21.937 0.004 26.605 hybrid contribution 0.334 2.035 -0.007 2.062 sum 15.386 -19.902 -0.003 25.156 Atomic orbital electron populations 1.69987 1.07800 1.28765 1.50387 1.25639 0.95613 1.02840 0.93291 0.85801 0.79335 0.78799 0.79656 1.18733 1.19639 1.18066 1.21247 0.89849 0.94606 1.53258 0.92803 1.19239 0.93568 0.80025 0.96374 1.45987 1.06201 1.10391 1.71435 1.17338 0.82405 0.86494 0.76538 1.90716 1.56294 1.45265 1.53198 1.22053 0.94140 0.91473 1.10175 1.22167 0.96304 0.94861 1.07415 1.23815 0.87730 0.96274 1.05059 1.42935 1.05363 1.03845 1.50430 1.18342 0.94967 0.80028 1.00476 1.22311 1.02202 0.91245 1.03355 1.23377 0.91804 0.96110 0.91850 1.67784 1.04305 1.36845 1.12742 1.23050 1.01231 0.86448 0.92701 1.22148 0.94586 1.00248 1.03482 1.73541 1.24543 0.93263 1.19875 0.91723 0.96095 0.96196 0.75674 0.79953 0.74066 0.79848 0.77839 0.79836 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.96 21.45 0.30 -56.35 16 2 C 0.03 1.53 5.47 84.65 0.46 2.00 16 3 Si 0.94 44.49 27.47 68.60 1.88 46.37 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 7 C -0.55 -31.75 9.83 25.60 0.25 -31.50 16 8 H 0.05 3.30 7.84 -2.91 -0.02 3.28 16 9 C 0.23 11.87 4.50 85.63 0.38 12.26 16 10 N -0.69 -31.26 5.55 -469.83 -2.61 -33.87 16 11 C 0.59 24.94 7.82 86.74 0.68 25.62 16 12 O -0.58 -27.24 16.92 -3.94 -0.07 -27.31 16 13 C -0.02 -0.58 7.13 42.47 0.30 -0.28 16 14 C -0.18 -4.48 10.80 22.42 0.24 -4.24 16 15 C 0.01 0.17 10.82 83.39 0.90 1.07 16 16 N -0.24 -5.65 3.51 -186.72 -0.66 -6.31 16 17 C 0.16 3.03 6.70 38.38 0.26 3.28 16 18 C -0.17 -1.77 9.50 22.48 0.21 -1.56 16 19 C 0.13 1.29 11.17 84.62 0.95 2.24 16 20 N -0.51 -8.17 10.36 -196.07 -2.03 -10.20 16 21 C 0.12 2.02 11.17 84.62 0.95 2.97 16 22 C -0.18 -3.68 9.67 22.48 0.22 -3.46 16 23 N -0.28 -8.74 10.94 -48.15 -0.53 -9.27 16 24 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 25 H 0.02 1.11 7.20 -2.39 -0.02 1.10 16 26 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 27 H 0.41 17.48 8.04 -92.71 -0.75 16.73 16 28 H 0.18 3.92 8.06 -2.91 -0.02 3.89 16 29 H 0.24 1.16 7.04 -2.91 -0.02 1.14 16 30 H 0.18 0.41 6.78 -2.91 -0.02 0.39 16 31 H 0.20 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.14 3.19 7.74 -2.91 -0.02 3.17 16 Total: -1.00 -77.05 298.74 2.46 -74.59 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.36 Total: 13.95 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.80 Total: 8.39 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -5.52 Total: -115.99 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.07 Total: -27.31 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -77.05 2.46 -74.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.389 kcal (2) G-P(sol) polarization free energy of solvation -77.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds