Wall clock time and date at job start Mon Mar 30 2020 01:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48505 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47291 * 299.99937 * 3 2 1 6 6 H 1.48502 * 109.47014 * 59.99939 * 3 2 1 7 7 C 1.37878 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00289 * 186.62990 * 7 2 1 9 9 C 1.50699 * 119.99765 * 6.63525 * 7 2 1 10 10 C 1.52999 * 113.00110 * 65.39668 * 9 7 2 11 11 O 1.45200 * 109.47114 * 53.52082 * 10 9 7 12 12 C 1.34235 * 116.99834 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99925 * 359.72461 * 12 11 10 14 14 C 1.50694 * 119.99744 * 179.97438 * 12 11 10 15 15 F 1.39904 * 110.01556 * 58.61104 * 14 12 11 16 16 C 1.54264 * 110.03516 * 297.16852 * 14 12 11 17 17 C 1.54895 * 104.19635 * 217.10619 * 16 14 12 18 18 C 1.54888 * 102.74888 * 37.94230 * 17 16 14 19 19 C 1.53880 * 110.03294 * 180.02562 * 14 12 11 20 20 C 1.54033 * 113.92663 * 197.32638 * 9 7 2 21 21 O 1.44178 * 85.51930 * 91.65880 * 20 9 7 22 22 C 1.44182 * 93.33852 * 24.19515 * 21 20 9 23 23 H 0.97002 * 119.99865 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47015 * 293.51507 * 10 9 7 25 25 H 1.09002 * 109.47116 * 173.51878 * 10 9 7 26 26 H 1.09000 * 110.48576 * 335.78360 * 16 14 12 27 27 H 1.09007 * 110.48708 * 98.42818 * 16 14 12 28 28 H 1.09001 * 110.75178 * 279.62488 * 17 16 14 29 29 H 1.08998 * 110.75574 * 156.25701 * 17 16 14 30 30 H 1.08997 * 110.48233 * 203.37911 * 18 17 16 31 31 H 1.09000 * 110.48537 * 80.73306 * 18 17 16 32 32 H 1.08999 * 110.03030 * 238.57422 * 19 14 12 33 33 H 1.08998 * 110.02654 * 0.02562 * 19 14 12 34 34 H 1.08995 * 113.86828 * 205.80628 * 20 9 7 35 35 H 1.08999 * 113.86655 * 337.51280 * 20 9 7 36 36 H 1.09004 * 113.86441 * 221.66262 * 22 21 20 37 37 H 1.08999 * 113.86687 * 89.95112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1972 0.1085 9 6 1.2585 -2.4948 -0.1497 10 6 0.5847 -2.6433 -1.5152 11 8 1.5667 -2.4364 -2.5646 12 6 1.1339 -2.5324 -3.8317 13 8 -0.0258 -2.7860 -4.0564 14 6 2.0959 -2.3295 -4.9738 15 9 3.1436 -3.2525 -4.8871 16 6 2.6535 -0.8914 -4.9459 17 6 2.7630 -0.4975 -6.4399 18 6 1.4984 -1.1442 -7.0575 19 6 1.3613 -2.4896 -6.3164 20 6 2.0674 -3.7324 0.2825 21 8 1.4695 -3.5303 1.5788 22 6 0.3350 -2.8231 1.0386 23 1 -0.4850 0.8401 0.0004 24 1 -0.2102 -1.9036 -1.6104 25 1 0.1623 -3.6441 -1.6051 26 1 1.9653 -0.2254 -4.4253 27 1 3.6356 -0.8721 -4.4733 28 1 3.6667 -0.9149 -6.8841 29 1 2.7390 0.5860 -6.5565 30 1 1.6375 -1.3094 -8.1259 31 1 0.6237 -0.5191 -6.8779 32 1 1.8215 -3.2862 -6.9010 33 1 0.3090 -2.7137 -6.1418 34 1 1.7570 -4.6553 -0.2073 35 1 3.1468 -3.5814 0.2664 36 1 0.0404 -1.9509 1.6222 37 1 -0.5044 -3.4683 0.7796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123059844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:43 Heat of formation + Delta-G solvation = -155.095651 kcal Electronic energy + Delta-G solvation = -22181.680600 eV Core-core repulsion = 18646.616450 eV Total energy + Delta-G solvation = -3535.064150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.76529 -40.04326 -39.14676 -37.20851 -35.74051 -32.95207 -30.17923 -28.93202 -28.87455 -25.49049 -25.30753 -24.36798 -22.28231 -20.98860 -19.58591 -19.03002 -17.79636 -16.84602 -16.28258 -15.98465 -15.49539 -15.19766 -14.87555 -14.63747 -14.38035 -14.28919 -14.14138 -13.67477 -13.24883 -12.71206 -12.56312 -12.03441 -11.84344 -11.65868 -11.49976 -11.28915 -11.19689 -11.05343 -10.94054 -10.78909 -10.64422 -10.51490 -10.11792 -9.99177 -9.54149 -9.45082 -9.10411 -8.80354 -8.33311 -6.21891 -4.24203 2.48098 3.04984 3.20673 3.29686 3.34649 4.16710 4.29621 4.30336 4.55870 4.84678 4.89445 5.13835 5.14756 5.23304 5.32911 5.36069 5.49403 5.75860 5.81131 5.83980 5.95857 5.99870 6.06041 6.16152 6.19150 6.19981 6.26637 6.35236 6.49204 6.90356 7.03765 7.22588 7.25881 7.33290 7.75139 8.10859 8.25947 8.73555 9.39358 10.86574 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.007121 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.312174 B = 3931.170978 C = 4788.286141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.484 4.484 8 H 0.067 0.933 9 C 0.031 3.969 10 C 0.080 3.920 11 O -0.316 6.316 12 C 0.441 3.559 13 O -0.506 6.506 14 C 0.132 3.868 15 F -0.186 7.186 16 C -0.140 4.140 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.146 4.146 20 C 0.028 3.972 21 O -0.388 6.388 22 C 0.051 3.949 23 H 0.264 0.736 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -1.715 -11.798 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.521 4.521 8 H 0.085 0.915 9 C 0.031 3.969 10 C 0.007 3.993 11 O -0.229 6.229 12 C 0.282 3.718 13 O -0.396 6.396 14 C 0.112 3.888 15 F -0.166 7.166 16 C -0.178 4.178 17 C -0.162 4.162 18 C -0.160 4.160 19 C -0.183 4.183 20 C -0.049 4.049 21 O -0.307 6.307 22 C -0.026 4.026 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.501 -1.763 -11.519 11.918 hybrid contribution 0.155 0.779 -0.087 0.799 sum 2.656 -0.984 -11.606 11.946 Atomic orbital electron populations 1.69898 1.05919 1.27124 1.49736 1.24957 0.94935 0.99329 0.94429 0.86444 0.80366 0.83120 0.77662 1.19428 1.20870 1.20919 1.20602 0.93529 0.88244 1.49754 0.91457 1.21141 0.92740 0.94782 0.88256 1.23557 0.90967 0.98979 0.85842 1.86595 1.43267 1.79249 1.13819 1.23693 0.88354 0.73983 0.85746 1.90593 1.19286 1.44220 1.85487 1.21407 0.83991 0.90217 0.93160 1.92920 1.58694 1.67838 1.97193 1.22972 1.03690 0.92647 0.98443 1.22554 0.98309 1.01144 0.94199 1.22354 0.98566 0.95448 0.99588 1.22810 1.03428 0.99688 0.92395 1.24098 0.99331 0.97322 0.84131 1.89496 1.37245 1.77723 1.26234 1.23920 0.88515 0.94316 0.95849 0.92605 0.89498 0.94272 0.88989 0.88595 0.90767 0.90469 0.90730 0.90845 0.89512 0.87861 0.92826 0.90274 0.88147 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 11.31 55.43 0.63 -23.05 16 2 C 0.07 1.72 5.25 -17.82 -0.09 1.63 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.48 -12.69 7.92 -34.44 -0.27 -12.97 16 8 H 0.07 1.79 7.82 -52.49 -0.41 1.38 16 9 C 0.03 0.76 0.62 -154.58 -0.10 0.66 16 10 C 0.08 1.86 4.67 37.16 0.17 2.03 16 11 O -0.32 -7.04 9.81 -39.27 -0.39 -7.43 16 12 C 0.44 8.79 6.84 36.00 0.25 9.03 16 13 O -0.51 -10.76 14.96 -18.75 -0.28 -11.04 16 14 C 0.13 2.10 1.59 -90.65 -0.14 1.95 16 15 F -0.19 -3.08 16.79 2.25 0.04 -3.04 16 16 C -0.14 -1.98 6.13 -25.07 -0.15 -2.14 16 17 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 18 C -0.12 -1.28 6.83 -25.10 -0.17 -1.45 16 19 C -0.15 -1.88 6.25 -25.64 -0.16 -2.04 16 20 C 0.03 0.62 8.35 37.61 0.31 0.93 16 21 O -0.39 -9.28 12.40 -35.23 -0.44 -9.71 16 22 C 0.05 1.20 7.91 37.61 0.30 1.50 16 23 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.09 2.21 7.21 -51.93 -0.37 1.83 16 25 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 26 H 0.09 1.42 7.85 -51.93 -0.41 1.01 16 27 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.98 8.02 -51.93 -0.42 0.57 16 33 H 0.10 1.46 6.40 -51.93 -0.33 1.13 16 34 H 0.05 1.06 8.03 -51.93 -0.42 0.64 16 35 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 36 H 0.10 2.54 7.36 -51.93 -0.38 2.15 16 37 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -28.56 311.29 -6.25 -34.80 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.25 Total: 1.71 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.23 Total: -2.37 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.63 Total: -23.05 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.10 Total: -28.18 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.56 -6.25 -34.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123059844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.293 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds