Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48505 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47291 * 299.99937 * 3 2 1 6 6 H 1.48502 * 109.47014 * 59.99939 * 3 2 1 7 7 C 1.37878 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00289 * 186.62990 * 7 2 1 9 9 C 1.50699 * 119.99765 * 6.63525 * 7 2 1 10 10 C 1.52999 * 113.00110 * 65.39668 * 9 7 2 11 11 O 1.45200 * 109.47114 * 53.52082 * 10 9 7 12 12 C 1.34235 * 116.99834 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99925 * 359.72461 * 12 11 10 14 14 C 1.50694 * 119.99744 * 179.97438 * 12 11 10 15 15 F 1.39904 * 110.01556 * 58.61104 * 14 12 11 16 16 C 1.54264 * 110.03516 * 297.16852 * 14 12 11 17 17 C 1.54895 * 104.19635 * 217.10619 * 16 14 12 18 18 C 1.54888 * 102.74888 * 37.94230 * 17 16 14 19 19 C 1.53880 * 110.03294 * 180.02562 * 14 12 11 20 20 C 1.54033 * 113.92663 * 197.32638 * 9 7 2 21 21 O 1.44178 * 85.51930 * 91.65880 * 20 9 7 22 22 C 1.44182 * 93.33852 * 24.19515 * 21 20 9 23 23 H 0.97002 * 119.99865 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47015 * 293.51507 * 10 9 7 25 25 H 1.09002 * 109.47116 * 173.51878 * 10 9 7 26 26 H 1.09000 * 110.48576 * 335.78360 * 16 14 12 27 27 H 1.09007 * 110.48708 * 98.42818 * 16 14 12 28 28 H 1.09001 * 110.75178 * 279.62488 * 17 16 14 29 29 H 1.08998 * 110.75574 * 156.25701 * 17 16 14 30 30 H 1.08997 * 110.48233 * 203.37911 * 18 17 16 31 31 H 1.09000 * 110.48537 * 80.73306 * 18 17 16 32 32 H 1.08999 * 110.03030 * 238.57422 * 19 14 12 33 33 H 1.08998 * 110.02654 * 0.02562 * 19 14 12 34 34 H 1.08995 * 113.86828 * 205.80628 * 20 9 7 35 35 H 1.08999 * 113.86655 * 337.51280 * 20 9 7 36 36 H 1.09004 * 113.86441 * 221.66262 * 22 21 20 37 37 H 1.08999 * 113.86687 * 89.95112 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1972 0.1085 9 6 1.2585 -2.4948 -0.1497 10 6 0.5847 -2.6433 -1.5152 11 8 1.5667 -2.4364 -2.5646 12 6 1.1339 -2.5324 -3.8317 13 8 -0.0258 -2.7860 -4.0564 14 6 2.0959 -2.3295 -4.9738 15 9 3.1436 -3.2525 -4.8871 16 6 2.6535 -0.8914 -4.9459 17 6 2.7630 -0.4975 -6.4399 18 6 1.4984 -1.1442 -7.0575 19 6 1.3613 -2.4896 -6.3164 20 6 2.0674 -3.7324 0.2825 21 8 1.4695 -3.5303 1.5788 22 6 0.3350 -2.8231 1.0386 23 1 -0.4850 0.8401 0.0004 24 1 -0.2102 -1.9036 -1.6104 25 1 0.1623 -3.6441 -1.6051 26 1 1.9653 -0.2254 -4.4253 27 1 3.6356 -0.8721 -4.4733 28 1 3.6667 -0.9149 -6.8841 29 1 2.7390 0.5860 -6.5565 30 1 1.6375 -1.3094 -8.1259 31 1 0.6237 -0.5191 -6.8779 32 1 1.8215 -3.2862 -6.9010 33 1 0.3090 -2.7137 -6.1418 34 1 1.7570 -4.6553 -0.2073 35 1 3.1468 -3.5814 0.2664 36 1 0.0404 -1.9509 1.6222 37 1 -0.5044 -3.4683 0.7796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123059844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = -170.974605 kcal Electronic energy + Delta-G solvation = -22182.369163 eV Core-core repulsion = 18646.616450 eV Total energy + Delta-G solvation = -3535.752714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.05949 -41.70521 -40.92600 -38.39389 -37.33921 -34.92270 -32.01007 -30.12172 -29.93133 -27.37667 -27.15159 -26.15657 -23.71849 -21.92803 -21.07274 -20.76999 -19.27383 -18.57348 -17.79043 -17.72100 -17.02182 -16.65776 -16.53983 -16.28572 -16.13387 -16.02918 -15.32836 -14.97417 -14.45404 -14.34671 -14.11664 -13.82451 -13.61411 -13.07251 -12.89804 -12.64722 -12.59517 -12.39881 -12.27363 -12.23229 -11.99633 -11.85650 -11.74842 -11.52384 -11.34576 -11.19999 -10.96804 -10.73879 -10.23634 -8.21073 -6.29138 0.90053 1.38366 1.42243 1.52256 1.54590 2.39289 2.96968 3.04386 3.18372 3.19253 3.33757 3.56948 4.00158 4.13803 4.18372 4.22978 4.31705 4.36252 4.41387 4.43267 4.53246 4.60669 4.66821 4.80669 4.93302 5.03476 5.07447 5.11492 5.16514 5.18317 5.35312 5.43083 5.44210 5.51877 5.70699 6.18960 6.56980 6.69980 7.36621 8.86276 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.007121 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.312174 B = 3931.170978 C = 4788.286141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.016 3.984 10 C 0.091 3.909 11 O -0.330 6.330 12 C 0.433 3.567 13 O -0.524 6.524 14 C 0.131 3.869 15 F -0.189 7.189 16 C -0.145 4.145 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.143 4.143 20 C 0.036 3.964 21 O -0.402 6.402 22 C 0.056 3.944 23 H 0.265 0.735 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -1.556 -13.624 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.015 3.985 10 C 0.017 3.983 11 O -0.244 6.244 12 C 0.275 3.725 13 O -0.415 6.415 14 C 0.111 3.889 15 F -0.170 7.170 16 C -0.183 4.183 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.180 4.180 20 C -0.040 4.040 21 O -0.321 6.321 22 C -0.021 4.021 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.488 -1.612 -13.353 13.895 hybrid contribution -0.164 0.685 0.492 0.859 sum 3.324 -0.927 -12.861 13.316 Atomic orbital electron populations 1.69988 1.06861 1.27667 1.50167 1.25586 0.95657 1.01984 0.94169 0.85618 0.79387 0.79767 0.77696 1.19069 1.20258 1.20786 1.20782 0.93259 0.89668 1.50105 0.92456 1.21213 0.93428 0.95064 0.88796 1.23255 0.90329 0.98617 0.86091 1.86595 1.43228 1.79778 1.14840 1.24648 0.89139 0.72946 0.85724 1.90573 1.20380 1.44876 1.85623 1.21718 0.83462 0.91081 0.92600 1.92911 1.58763 1.68109 1.97174 1.23038 1.02840 0.91112 1.01271 1.22577 0.99157 1.02364 0.91088 1.22393 0.98349 0.93656 1.01035 1.22871 1.02061 1.02069 0.91016 1.24189 0.99413 0.97439 0.82991 1.89468 1.37540 1.77761 1.27364 1.23835 0.89110 0.94037 0.95154 0.92634 0.92356 0.93017 0.90939 0.88722 0.88970 0.88791 0.87589 0.91238 0.87502 0.89459 0.90142 0.89789 0.90457 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.18 11.31 21.45 0.24 -48.94 16 2 C 0.03 1.39 5.25 84.66 0.44 1.83 16 3 Si 0.95 42.05 29.54 68.60 2.03 44.08 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.50 -26.55 7.92 25.60 0.20 -26.34 16 8 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 9 C 0.02 0.75 0.62 -52.23 -0.03 0.72 16 10 C 0.09 4.26 4.67 71.98 0.34 4.60 16 11 O -0.33 -14.87 9.81 -51.47 -0.50 -15.37 16 12 C 0.43 17.30 6.84 71.23 0.49 17.79 16 13 O -0.52 -22.50 14.96 21.98 0.33 -22.17 16 14 C 0.13 4.03 1.59 -10.82 -0.02 4.01 16 15 F -0.19 -6.01 16.79 44.97 0.75 -5.25 16 16 C -0.14 -3.94 6.13 31.67 0.19 -3.74 16 17 C -0.11 -2.09 6.91 31.89 0.22 -1.87 16 18 C -0.12 -2.09 6.83 31.65 0.22 -1.87 16 19 C -0.14 -3.40 6.25 31.30 0.20 -3.21 16 20 C 0.04 1.55 8.35 72.27 0.60 2.15 16 21 O -0.40 -19.01 12.40 -148.98 -1.85 -20.86 16 22 C 0.06 2.62 7.91 72.28 0.57 3.20 16 23 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 24 H 0.06 3.04 7.21 -2.39 -0.02 3.03 16 25 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 26 H 0.07 2.24 7.85 -2.39 -0.02 2.22 16 27 H 0.09 2.55 8.11 -2.38 -0.02 2.53 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 2.11 8.02 -2.39 -0.02 2.09 16 33 H 0.09 2.39 6.40 -2.39 -0.02 2.38 16 34 H 0.08 3.01 8.03 -2.39 -0.02 2.99 16 35 H 0.08 3.48 8.09 -2.39 -0.02 3.46 16 36 H 0.08 3.99 7.36 -2.39 -0.02 3.97 16 37 H 0.07 2.91 8.10 -2.39 -0.02 2.89 16 Total: -1.00 -61.33 311.29 5.49 -55.84 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.07 Total: 15.40 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 3.42 Total: -2.73 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.24 Total: -48.94 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -2.02 Total: -58.40 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.75 Total: -5.25 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -61.33 5.49 -55.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123059844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.133 kcal (2) G-P(sol) polarization free energy of solvation -61.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds