Wall clock time and date at job start Mon Mar 30 2020 00:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48498 * 109.47416 * 275.39260 * 3 2 1 5 5 H 1.48494 * 109.47177 * 35.39171 * 3 2 1 6 6 H 1.48500 * 109.47498 * 155.39176 * 3 2 1 7 7 C 1.37884 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99630 * 353.75265 * 7 2 1 9 9 C 1.50694 * 120.00106 * 173.75884 * 7 2 1 10 10 C 1.53001 * 113.00408 * 85.88384 * 9 7 2 11 11 O 1.45197 * 109.46794 * 46.00402 * 10 9 7 12 12 C 1.34229 * 116.99926 * 184.58891 * 11 10 9 13 13 O 1.20821 * 120.00097 * 5.26482 * 12 11 10 14 14 C 1.50703 * 120.00038 * 185.27291 * 12 11 10 15 15 C 1.53003 * 109.47103 * 173.83067 * 14 12 11 16 16 O 1.43744 * 109.63202 * 294.36329 * 15 14 12 17 17 C 1.44788 * 104.81618 * 215.80256 * 16 15 14 18 18 C 1.54917 * 101.71626 * 36.10587 * 17 16 15 19 19 O 1.43372 * 109.62990 * 174.99710 * 15 14 12 20 20 C 1.54036 * 113.92509 * 217.81686 * 9 7 2 21 21 O 1.44184 * 85.51770 * 91.65864 * 20 9 7 22 22 C 1.44177 * 93.33776 * 24.19621 * 21 20 9 23 23 H 0.96993 * 120.00022 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47175 * 286.00578 * 10 9 7 25 25 H 1.08997 * 109.47328 * 166.00407 * 10 9 7 26 26 H 1.09001 * 109.47366 * 53.83369 * 14 12 11 27 27 H 1.09002 * 109.46918 * 293.82992 * 14 12 11 28 28 H 1.09005 * 109.62490 * 54.60788 * 15 14 12 29 29 H 1.08993 * 110.98273 * 277.99793 * 17 16 15 30 30 H 1.08998 * 111.00789 * 154.22631 * 17 16 15 31 31 H 1.09002 * 110.69607 * 206.03500 * 18 17 16 32 32 H 1.09003 * 110.84489 * 82.90487 * 18 17 16 33 33 H 1.09006 * 113.86432 * 205.80410 * 20 9 7 34 34 H 1.08998 * 113.86705 * 337.51168 * 20 9 7 35 35 H 1.09005 * 113.85666 * 221.66107 * 22 21 20 36 36 H 1.08998 * 113.98455 * 89.96949 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3827 2.1122 -1.3938 5 1 1.5082 2.6170 0.8108 6 1 3.5990 1.4100 0.5830 7 6 2.0046 -1.1941 -0.0005 8 1 1.4694 -2.1266 0.1008 9 6 3.5048 -1.1978 -0.1424 10 6 4.2321 -1.0227 1.1923 11 8 3.6348 -1.8955 2.1870 12 6 4.0973 -1.7942 3.4431 13 8 4.9033 -0.9387 3.7229 14 6 3.6114 -2.7477 4.5042 15 6 4.4000 -2.5190 5.7952 16 8 5.7778 -2.8731 5.5886 17 6 6.2038 -3.4519 6.8456 18 6 4.9258 -4.2033 7.2950 19 8 3.8633 -3.3415 6.8396 20 6 4.0484 -2.3566 -0.9995 21 8 3.9382 -1.4396 -2.1066 22 6 4.0263 -0.2755 -1.2605 23 1 -0.4850 0.8400 -0.0004 24 1 4.1463 0.0135 1.5195 25 1 5.2843 -1.2788 1.0691 26 1 3.7581 -3.7734 4.1657 27 1 2.5514 -2.5745 4.6904 28 1 4.3331 -1.4701 6.0841 29 1 6.4720 -2.6753 7.5618 30 1 7.0317 -4.1448 6.6960 31 1 4.9006 -4.3057 8.3799 32 1 4.8615 -5.1802 6.8158 33 1 5.0739 -2.6385 -0.7606 34 1 3.3740 -3.2104 -1.0653 35 1 3.3342 0.5213 -1.5335 36 1 5.0442 0.0799 -1.1003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123061496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:44 Heat of formation + Delta-G solvation = -168.563599 kcal Electronic energy + Delta-G solvation = -21644.461392 eV Core-core repulsion = 18096.440438 eV Total energy + Delta-G solvation = -3548.020954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69764 -39.94706 -39.24591 -35.89795 -35.16980 -32.83652 -32.23102 -30.64602 -28.91575 -26.01430 -25.46062 -24.44339 -23.61283 -22.98750 -20.32687 -19.12469 -17.90901 -17.09861 -16.90873 -16.38771 -16.30902 -16.04392 -15.67456 -15.41779 -14.78601 -14.66901 -14.33875 -13.77637 -13.65676 -13.17167 -13.05621 -12.87292 -12.83324 -12.18055 -12.11293 -11.96687 -11.57281 -11.02070 -10.48565 -10.46663 -10.40837 -10.35558 -10.19350 -10.00766 -9.67764 -9.53429 -9.17224 -8.71301 -8.59139 -6.20326 -4.19231 2.67055 2.93907 3.13876 3.21159 3.28631 3.37163 3.89673 4.25584 4.31078 4.56297 4.59194 4.70102 4.87398 5.01377 5.09950 5.13886 5.20855 5.31492 5.47182 5.55782 5.63462 5.76893 5.80824 5.85570 5.99030 6.01896 6.19865 6.33000 6.61308 6.82352 6.92937 6.97917 7.13142 7.54522 8.26837 8.39657 8.84408 9.39157 10.92195 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.026418 B = 0.004902 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.647025 B = 5710.183645 C = 6072.283914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.482 4.482 8 H 0.087 0.913 9 C -0.006 4.006 10 C 0.068 3.932 11 O -0.321 6.321 12 C 0.461 3.539 13 O -0.518 6.518 14 C -0.130 4.130 15 C 0.246 3.754 16 O -0.365 6.365 17 C 0.014 3.986 18 C 0.020 3.980 19 O -0.381 6.381 20 C 0.040 3.960 21 O -0.370 6.370 22 C 0.023 3.977 23 H 0.267 0.733 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.677 -6.811 12.710 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.696 3.304 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.105 0.895 9 C -0.007 4.007 10 C -0.006 4.006 11 O -0.235 6.235 12 C 0.304 3.696 13 O -0.408 6.408 14 C -0.168 4.168 15 C 0.151 3.849 16 O -0.285 6.285 17 C -0.063 4.063 18 C -0.057 4.057 19 O -0.302 6.302 20 C -0.037 4.037 21 O -0.289 6.289 22 C -0.053 4.053 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.131 0.869 27 H 0.146 0.854 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.591 -6.417 12.331 17.476 hybrid contribution 0.578 1.098 0.287 1.274 sum 11.169 -5.319 12.619 17.671 Atomic orbital electron populations 1.69855 1.06076 1.27123 1.49314 1.24944 0.94747 0.98678 0.94273 0.87292 0.80813 0.84394 0.77891 1.20183 1.21657 1.18202 1.20293 0.86117 0.95290 1.50245 0.89543 1.21664 0.98632 0.92277 0.88132 1.23826 0.94757 0.93496 0.88514 1.86593 1.60198 1.59662 1.17065 1.23135 0.78845 0.83471 0.84191 1.90629 1.32694 1.35103 1.82404 1.21693 1.02880 1.00794 0.91454 1.23801 0.79251 0.95172 0.86648 1.89371 1.24919 1.81108 1.33086 1.24402 0.98165 0.97306 0.86413 1.24222 0.85584 0.94668 1.01205 1.88910 1.35541 1.52885 1.52899 1.24031 0.98421 0.95230 0.86023 1.89569 1.94367 1.16845 1.28071 1.24255 0.98792 0.91337 0.90961 0.92329 0.91219 0.93281 0.86938 0.85427 0.88405 0.90537 0.87323 0.88117 0.90406 0.92311 0.89381 0.89861 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 2 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 3 Si 0.87 21.00 23.79 -169.99 -4.04 16.96 16 4 H -0.27 -6.49 6.78 56.52 0.38 -6.10 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -5.81 4.72 56.52 0.27 -5.55 16 7 C -0.48 -13.15 8.43 -34.44 -0.29 -13.44 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C -0.01 -0.14 0.57 -154.58 -0.09 -0.22 16 10 C 0.07 1.47 4.82 37.16 0.18 1.65 16 11 O -0.32 -6.79 9.63 -39.26 -0.38 -7.17 16 12 C 0.46 8.66 7.80 36.01 0.28 8.94 16 13 O -0.52 -10.79 15.21 -22.90 -0.35 -11.14 16 14 C -0.13 -1.86 5.91 -27.88 -0.16 -2.03 16 15 C 0.25 3.32 3.56 37.16 0.13 3.45 16 16 O -0.36 -5.02 10.78 -63.54 -0.69 -5.70 16 17 C 0.01 0.12 7.95 38.17 0.30 0.42 16 18 C 0.02 0.16 8.07 38.17 0.31 0.47 16 19 O -0.38 -4.56 11.22 -59.04 -0.66 -5.22 16 20 C 0.04 0.82 8.34 37.61 0.31 1.13 16 21 O -0.37 -8.49 12.40 -35.23 -0.44 -8.92 16 22 C 0.02 0.52 6.53 37.61 0.25 0.76 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.07 1.59 5.50 -51.93 -0.29 1.30 16 25 H 0.05 0.95 7.89 -51.93 -0.41 0.54 16 26 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 27 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 28 H 0.10 1.37 7.86 -51.93 -0.41 0.96 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 34 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 35 H 0.08 1.95 3.82 -51.93 -0.20 1.75 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -33.06 297.40 -4.98 -38.04 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.80 Total: 1.18 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 1.12 Total: 3.19 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.77 Total: -25.69 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.51 Total: -38.16 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.04 Total: 16.96 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.06 -4.98 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123061496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.526 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds