Wall clock time and date at job start Mon Mar 30 2020 00:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48498 * 109.47416 * 275.39260 * 3 2 1 5 5 H 1.48494 * 109.47177 * 35.39171 * 3 2 1 6 6 H 1.48500 * 109.47498 * 155.39176 * 3 2 1 7 7 C 1.37884 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99630 * 353.75265 * 7 2 1 9 9 C 1.50694 * 120.00106 * 173.75884 * 7 2 1 10 10 C 1.53001 * 113.00408 * 85.88384 * 9 7 2 11 11 O 1.45197 * 109.46794 * 46.00402 * 10 9 7 12 12 C 1.34229 * 116.99926 * 184.58891 * 11 10 9 13 13 O 1.20821 * 120.00097 * 5.26482 * 12 11 10 14 14 C 1.50703 * 120.00038 * 185.27291 * 12 11 10 15 15 C 1.53003 * 109.47103 * 173.83067 * 14 12 11 16 16 O 1.43744 * 109.63202 * 294.36329 * 15 14 12 17 17 C 1.44788 * 104.81618 * 215.80256 * 16 15 14 18 18 C 1.54917 * 101.71626 * 36.10587 * 17 16 15 19 19 O 1.43372 * 109.62990 * 174.99710 * 15 14 12 20 20 C 1.54036 * 113.92509 * 217.81686 * 9 7 2 21 21 O 1.44184 * 85.51770 * 91.65864 * 20 9 7 22 22 C 1.44177 * 93.33776 * 24.19621 * 21 20 9 23 23 H 0.96993 * 120.00022 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47175 * 286.00578 * 10 9 7 25 25 H 1.08997 * 109.47328 * 166.00407 * 10 9 7 26 26 H 1.09001 * 109.47366 * 53.83369 * 14 12 11 27 27 H 1.09002 * 109.46918 * 293.82992 * 14 12 11 28 28 H 1.09005 * 109.62490 * 54.60788 * 15 14 12 29 29 H 1.08993 * 110.98273 * 277.99793 * 17 16 15 30 30 H 1.08998 * 111.00789 * 154.22631 * 17 16 15 31 31 H 1.09002 * 110.69607 * 206.03500 * 18 17 16 32 32 H 1.09003 * 110.84489 * 82.90487 * 18 17 16 33 33 H 1.09006 * 113.86432 * 205.80410 * 20 9 7 34 34 H 1.08998 * 113.86705 * 337.51168 * 20 9 7 35 35 H 1.09005 * 113.85666 * 221.66107 * 22 21 20 36 36 H 1.08998 * 113.98455 * 89.96949 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3827 2.1122 -1.3938 5 1 1.5082 2.6170 0.8108 6 1 3.5990 1.4100 0.5830 7 6 2.0046 -1.1941 -0.0005 8 1 1.4694 -2.1266 0.1008 9 6 3.5048 -1.1978 -0.1424 10 6 4.2321 -1.0227 1.1923 11 8 3.6348 -1.8955 2.1870 12 6 4.0973 -1.7942 3.4431 13 8 4.9033 -0.9387 3.7229 14 6 3.6114 -2.7477 4.5042 15 6 4.4000 -2.5190 5.7952 16 8 5.7778 -2.8731 5.5886 17 6 6.2038 -3.4519 6.8456 18 6 4.9258 -4.2033 7.2950 19 8 3.8633 -3.3415 6.8396 20 6 4.0484 -2.3566 -0.9995 21 8 3.9382 -1.4396 -2.1066 22 6 4.0263 -0.2755 -1.2605 23 1 -0.4850 0.8400 -0.0004 24 1 4.1463 0.0135 1.5195 25 1 5.2843 -1.2788 1.0691 26 1 3.7581 -3.7734 4.1657 27 1 2.5514 -2.5745 4.6904 28 1 4.3331 -1.4701 6.0841 29 1 6.4720 -2.6753 7.5618 30 1 7.0317 -4.1448 6.6960 31 1 4.9006 -4.3057 8.3799 32 1 4.8615 -5.1802 6.8158 33 1 5.0739 -2.6385 -0.7606 34 1 3.3740 -3.2104 -1.0653 35 1 3.3342 0.5213 -1.5335 36 1 5.0442 0.0799 -1.1003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123061496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:44 Heat of formation + Delta-G solvation = -193.709954 kcal Electronic energy + Delta-G solvation = -21645.551819 eV Core-core repulsion = 18096.440438 eV Total energy + Delta-G solvation = -3549.111382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.87355 -41.40954 -40.73849 -37.47050 -36.06643 -34.87634 -33.35267 -32.41453 -29.81605 -27.71939 -27.26859 -26.20256 -24.53824 -23.96453 -21.72314 -20.97452 -19.06680 -18.61867 -18.09545 -17.98503 -17.77311 -17.40277 -17.11662 -16.76062 -16.33859 -15.94813 -15.62731 -15.49558 -14.91455 -14.65518 -14.50383 -14.11927 -13.80826 -13.74477 -13.51621 -13.27125 -12.84516 -12.36345 -12.32740 -12.23965 -12.11844 -11.92881 -11.46250 -11.40751 -11.20510 -10.99143 -10.78539 -10.66283 -10.41955 -8.35163 -6.37800 1.20303 1.22396 1.28223 1.35338 1.65327 2.23568 2.48553 2.77313 2.91665 3.13411 3.47448 3.60798 3.71371 3.89016 4.01592 4.09214 4.10680 4.21409 4.25760 4.30843 4.40561 4.45454 4.54860 4.57948 4.62061 4.64600 4.79492 4.93115 4.95926 5.22351 5.31501 5.54669 5.61073 5.98627 6.21923 6.63863 6.79903 7.23998 8.81123 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.026418 B = 0.004902 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.647025 B = 5710.183645 C = 6072.283914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.020 3.980 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.229 1.229 7 C -0.480 4.480 8 H 0.045 0.955 9 C -0.022 4.022 10 C 0.072 3.928 11 O -0.339 6.339 12 C 0.459 3.541 13 O -0.539 6.539 14 C -0.125 4.125 15 C 0.252 3.748 16 O -0.393 6.393 17 C 0.008 3.992 18 C 0.015 3.985 19 O -0.393 6.393 20 C 0.049 3.951 21 O -0.391 6.391 22 C 0.025 3.975 23 H 0.267 0.733 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.253 -7.210 13.672 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.178 4.178 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.153 1.153 7 C -0.518 4.518 8 H 0.063 0.937 9 C -0.023 4.023 10 C -0.002 4.002 11 O -0.255 6.255 12 C 0.303 3.697 13 O -0.430 6.430 14 C -0.163 4.163 15 C 0.156 3.844 16 O -0.314 6.314 17 C -0.068 4.068 18 C -0.060 4.060 19 O -0.315 6.315 20 C -0.027 4.027 21 O -0.310 6.310 22 C -0.051 4.051 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.199 -6.844 13.305 19.952 hybrid contribution -0.216 1.065 0.061 1.088 sum 12.983 -5.779 13.366 19.509 Atomic orbital electron populations 1.70003 1.07969 1.28002 1.51798 1.25735 0.95409 1.02412 0.94225 0.86415 0.80767 0.79761 0.78496 1.18958 1.22401 1.15262 1.20431 0.88778 0.93587 1.49018 0.93702 1.21653 0.96036 0.94763 0.89859 1.23654 0.95954 0.93017 0.87604 1.86603 1.60935 1.59728 1.18188 1.23899 0.78219 0.83680 0.83880 1.90607 1.33737 1.36202 1.82485 1.21802 1.03443 1.00428 0.90578 1.23571 0.79454 0.94973 0.86357 1.89337 1.24876 1.81573 1.35616 1.24719 0.99117 0.98003 0.84933 1.24528 0.84175 0.94340 1.03003 1.88898 1.36882 1.53374 1.52329 1.24161 1.00487 0.94045 0.84039 1.89548 1.94748 1.17628 1.29057 1.24371 1.00603 0.90614 0.89522 0.92407 0.92554 0.90365 0.85200 0.84476 0.89660 0.89609 0.84868 0.85317 0.89250 0.88110 0.89981 0.91455 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 2 C 0.02 1.16 5.43 84.66 0.46 1.62 16 3 Si 0.92 43.10 23.79 68.60 1.63 44.74 16 4 H -0.26 -11.78 6.78 99.48 0.67 -11.11 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.23 -9.62 4.72 99.48 0.47 -9.15 16 7 C -0.48 -26.69 8.43 25.60 0.22 -26.48 16 8 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 9 C -0.02 -0.98 0.57 -52.23 -0.03 -1.01 16 10 C 0.07 2.94 4.82 71.98 0.35 3.28 16 11 O -0.34 -14.07 9.63 -51.41 -0.49 -14.56 16 12 C 0.46 16.80 7.80 71.24 0.56 17.35 16 13 O -0.54 -21.86 15.21 25.95 0.39 -21.47 16 14 C -0.12 -3.43 5.91 29.85 0.18 -3.26 16 15 C 0.25 6.48 3.56 71.98 0.26 6.74 16 16 O -0.39 -10.16 10.78 -121.92 -1.31 -11.47 16 17 C 0.01 0.12 7.95 72.64 0.58 0.69 16 18 C 0.01 0.20 8.07 72.64 0.59 0.79 16 19 O -0.39 -8.70 11.22 -126.22 -1.42 -10.11 16 20 C 0.05 1.91 8.34 72.27 0.60 2.51 16 21 O -0.39 -17.10 12.40 -148.98 -1.85 -18.95 16 22 C 0.03 1.05 6.53 72.28 0.47 1.52 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.06 2.44 5.50 -2.39 -0.01 2.42 16 25 H 0.08 2.74 7.89 -2.39 -0.02 2.72 16 26 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.09 2.37 7.86 -2.38 -0.02 2.35 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 3.11 7.93 -2.38 -0.02 3.09 16 34 H 0.08 3.25 8.09 -2.39 -0.02 3.23 16 35 H 0.07 3.01 3.82 -2.38 -0.01 3.00 16 36 H 0.10 3.46 8.10 -2.39 -0.02 3.44 16 Total: -1.00 -73.17 297.40 2.30 -70.88 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.82 Total: 14.91 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 4.22 Total: 3.76 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.30 Total: -57.71 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -4.68 Total: -76.57 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.63 Total: 44.74 kcal Total: -73.17 2.30 -70.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123061496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.833 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds