Wall clock time and date at job start Mon Mar 30 2020 01:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40301 * 126.84291 * 2 1 4 4 N 1.28733 * 108.18773 * 180.27020 * 3 2 1 5 5 C 1.33272 * 110.00051 * 359.77470 * 4 3 2 6 6 C 1.35864 * 108.85985 * 0.02562 * 5 4 3 7 7 N 1.39383 * 126.67426 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00403 * 0.02562 * 7 6 5 9 9 O 1.21609 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.47570 * 120.00029 * 180.02562 * 8 7 6 11 11 C 1.40046 * 119.89989 * 180.02562 * 10 8 7 12 12 C 1.36295 * 120.10814 * 180.29806 * 11 10 8 13 13 C 1.40903 * 119.89204 * 359.44856 * 12 11 10 14 14 C 1.41086 * 120.10191 * 180.25367 * 13 12 11 15 15 H 1.08000 * 119.99914 * 204.82865 * 14 13 12 16 16 C 1.40222 * 119.99703 * 24.82381 * 14 13 12 17 17 N 1.30651 * 120.00403 * 17.72576 * 16 14 13 18 18 Si 1.86807 * 119.99786 * 197.71826 * 16 14 13 19 19 H 1.48500 * 109.46949 * 60.00624 * 18 16 14 20 20 H 1.48503 * 109.46973 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46954 * 300.00261 * 18 16 14 22 22 C 1.40901 * 119.79600 * 0.54758 * 13 12 11 23 23 C 1.36298 * 119.89779 * 359.73248 * 22 13 12 24 24 H 1.08999 * 109.47442 * 270.10316 * 1 2 3 25 25 H 1.09004 * 109.47379 * 30.10344 * 1 2 3 26 26 H 1.09006 * 109.47103 * 150.09833 * 1 2 3 27 27 H 1.08001 * 125.56722 * 179.97438 * 5 4 3 28 28 H 0.97003 * 119.99460 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.94484 * 0.02562 * 11 10 8 30 30 H 1.08004 * 120.05349 * 179.70081 * 12 11 10 31 31 H 0.96993 * 120.00319 * 179.97438 * 17 16 14 32 32 H 1.08007 * 120.05516 * 179.71094 * 22 13 12 33 33 H 1.07997 * 119.94986 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1228 0.0000 4 7 3.5260 0.7110 -0.0058 5 6 3.5573 -0.6213 -0.0047 6 6 2.2823 -1.0906 0.0015 7 7 1.8871 -2.4272 0.0040 8 6 2.8153 -3.4044 0.0006 9 8 3.9977 -3.1200 -0.0051 10 6 2.3969 -4.8195 0.0027 11 6 3.3632 -5.8332 -0.0003 12 6 2.9814 -7.1417 -0.0046 13 6 1.6121 -7.4737 0.0058 14 6 1.2121 -8.8266 0.0069 15 1 0.2418 -9.1031 -0.3785 16 6 2.0743 -9.8122 0.5083 17 7 3.0752 -9.4749 1.2773 18 14 1.7916 -11.6077 0.0770 19 1 1.8671 -11.7807 -1.3959 20 1 2.8327 -12.4430 0.7280 21 1 0.4501 -12.0267 0.5566 22 6 0.6436 -6.4504 0.0089 23 6 1.0347 -5.1447 0.0073 24 1 -0.3634 0.0019 1.0276 25 1 -0.3634 0.8891 -0.5154 26 1 -0.3633 -0.8909 -0.5123 27 1 4.4503 -1.2287 -0.0091 28 1 0.9440 -2.6541 0.0082 29 1 4.4125 -5.5778 -0.0038 30 1 3.7274 -7.9227 -0.0118 31 1 3.6714 -10.1567 1.6244 32 1 -0.4072 -6.7001 0.0122 33 1 0.2930 -4.3597 0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128886010.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:40 Heat of formation + Delta-G solvation = 83.139288 kcal Electronic energy + Delta-G solvation = -19488.722059 eV Core-core repulsion = 16323.510183 eV Total energy + Delta-G solvation = -3165.211876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.90163 -39.44172 -37.39934 -35.18926 -34.11140 -33.69612 -30.64349 -29.88139 -29.03856 -27.60610 -26.16371 -23.12792 -22.08952 -21.63114 -20.76248 -19.74378 -18.17372 -17.66798 -16.62608 -16.14666 -16.09556 -15.49163 -14.48902 -14.39968 -14.21284 -13.99193 -13.47173 -13.32809 -13.03511 -12.94672 -12.43525 -12.11453 -11.72522 -11.58004 -11.36273 -11.25687 -11.05611 -10.90884 -10.79542 -10.26266 -9.73810 -9.66279 -9.51561 -9.38831 -8.20586 -7.91681 -7.77165 -7.20849 -4.80347 1.36083 2.00333 2.02658 2.76261 2.83582 2.85426 2.86889 2.91455 3.23011 3.59075 3.63765 4.35497 4.36870 4.86110 4.95851 5.10896 5.32698 5.36054 5.49291 5.63599 5.76876 5.90722 6.08076 6.55444 6.61697 6.66211 6.83214 6.85093 6.87900 7.22170 7.36711 7.40583 7.65431 7.77678 7.87240 8.22801 8.40545 8.42420 8.53175 8.57643 9.70280 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048435 B = 0.003604 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.958142 B = 7766.440659 C = 8260.593330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.398 5.398 3 N -0.093 5.093 4 N -0.226 5.226 5 C -0.095 4.095 6 C 0.298 3.702 7 N -0.650 5.650 8 C 0.577 3.423 9 O -0.536 6.536 10 C -0.289 4.289 11 C -0.028 4.028 12 C -0.182 4.182 13 C 0.129 3.871 14 C -0.433 4.433 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.760 5.760 18 Si 0.917 3.083 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.232 4.232 23 C -0.047 4.047 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.208 0.792 28 H 0.410 0.590 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.291 0.709 32 H 0.100 0.900 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 5.205 -1.521 8.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.193 5.193 3 N -0.072 5.072 4 N -0.095 5.095 5 C -0.256 4.256 6 C 0.070 3.930 7 N -0.300 5.300 8 C 0.375 3.625 9 O -0.414 6.414 10 C -0.294 4.294 11 C -0.048 4.048 12 C -0.201 4.201 13 C 0.126 3.874 14 C -0.459 4.459 15 H 0.105 0.895 16 C -0.151 4.151 17 N -0.382 5.382 18 Si 0.740 3.260 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.186 1.186 22 C -0.251 4.251 23 C -0.066 4.066 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.225 0.775 28 H 0.247 0.753 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.493 6.770 -1.367 8.825 hybrid contribution -1.062 -2.022 -0.006 2.284 sum -6.554 4.748 -1.373 8.209 Atomic orbital electron populations 1.21967 0.73967 1.05001 1.04044 1.50495 1.07958 1.04529 1.56322 1.81959 0.93823 1.04100 1.27305 1.74160 1.12830 1.11933 1.10567 1.23594 0.96961 0.90093 1.14919 1.19028 0.91421 0.81837 1.00726 1.43218 1.11926 1.00657 1.74151 1.18794 0.84308 0.85244 0.74160 1.90592 1.17228 1.83045 1.50504 1.18551 0.94135 0.88679 1.27995 1.20458 0.97312 0.92278 0.94737 1.21022 0.96459 0.94626 1.08018 1.17817 0.91711 0.92761 0.85147 1.19912 1.02110 0.91279 1.32636 0.89459 1.26167 0.93674 1.02801 0.92448 1.69721 1.11563 1.37602 1.19348 0.86204 0.79541 0.79905 0.80384 1.18297 1.19849 1.18552 1.20664 0.98122 0.92264 1.14072 1.20316 0.93201 0.95844 0.97254 0.89925 0.88271 0.89590 0.77530 0.75327 0.87746 0.85923 0.89734 0.88209 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.39 59.85 0.68 1.43 16 2 N -0.40 -5.55 4.09 -67.00 -0.27 -5.82 16 3 N -0.09 -1.55 13.81 60.35 0.83 -0.71 16 4 N -0.23 -4.10 12.32 30.24 0.37 -3.73 16 5 C -0.10 -1.71 10.76 -17.78 -0.19 -1.90 16 6 C 0.30 4.80 7.75 -152.41 -1.18 3.62 16 7 N -0.65 -9.98 5.37 -12.23 -0.07 -10.04 16 8 C 0.58 11.05 7.73 -12.45 -0.10 10.95 16 9 O -0.54 -11.46 13.48 5.27 0.07 -11.39 16 10 C -0.29 -5.90 5.89 -104.73 -0.62 -6.51 16 11 C -0.03 -0.63 9.52 -39.60 -0.38 -1.01 16 12 C -0.18 -4.27 8.63 -39.27 -0.34 -4.61 16 13 C 0.13 3.01 5.57 -106.80 -0.60 2.42 16 14 C -0.43 -9.91 9.04 -37.76 -0.34 -10.25 16 15 H 0.09 1.87 7.91 -52.49 -0.42 1.46 16 16 C 0.07 1.57 5.14 -17.31 -0.09 1.49 16 17 N -0.76 -17.29 10.96 55.56 0.61 -16.68 16 18 Si 0.92 16.12 29.60 -169.99 -5.03 11.09 16 19 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 20 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 21 H -0.26 -4.54 7.11 56.52 0.40 -4.13 16 22 C -0.23 -4.82 9.73 -39.27 -0.38 -5.20 16 23 C -0.05 -0.88 9.47 -39.60 -0.38 -1.26 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.52 7.65 -51.93 -0.40 0.13 16 27 H 0.21 3.90 5.83 -52.49 -0.31 3.59 16 28 H 0.41 4.97 6.16 -40.82 -0.25 4.71 16 29 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 30 H 0.12 2.96 6.16 -52.48 -0.32 2.64 16 31 H 0.29 5.97 8.29 -40.82 -0.34 5.64 16 32 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 33 H 0.09 1.26 6.37 -52.49 -0.33 0.92 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -27.74 291.91 -5.82 -33.56 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -2.83 Total: 10.16 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.90 Total: -10.84 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 1.47 Total: -36.99 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 16.12 SS G_CDS: -5.03 Total: 11.09 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.74 -5.82 -33.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128886010.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.702 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds