Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40301 * 126.84291 * 2 1 4 4 N 1.28733 * 108.18773 * 180.27020 * 3 2 1 5 5 C 1.33272 * 110.00051 * 359.77470 * 4 3 2 6 6 C 1.35864 * 108.85985 * 0.02562 * 5 4 3 7 7 N 1.39383 * 126.67426 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00403 * 0.02562 * 7 6 5 9 9 O 1.21609 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.47570 * 120.00029 * 180.02562 * 8 7 6 11 11 C 1.40046 * 119.89989 * 180.02562 * 10 8 7 12 12 C 1.36295 * 120.10814 * 180.29806 * 11 10 8 13 13 C 1.40903 * 119.89204 * 359.44856 * 12 11 10 14 14 C 1.41086 * 120.10191 * 180.25367 * 13 12 11 15 15 H 1.08000 * 119.99914 * 204.82865 * 14 13 12 16 16 C 1.40222 * 119.99703 * 24.82381 * 14 13 12 17 17 N 1.30651 * 120.00403 * 17.72576 * 16 14 13 18 18 Si 1.86807 * 119.99786 * 197.71826 * 16 14 13 19 19 H 1.48500 * 109.46949 * 60.00624 * 18 16 14 20 20 H 1.48503 * 109.46973 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46954 * 300.00261 * 18 16 14 22 22 C 1.40901 * 119.79600 * 0.54758 * 13 12 11 23 23 C 1.36298 * 119.89779 * 359.73248 * 22 13 12 24 24 H 1.08999 * 109.47442 * 270.10316 * 1 2 3 25 25 H 1.09004 * 109.47379 * 30.10344 * 1 2 3 26 26 H 1.09006 * 109.47103 * 150.09833 * 1 2 3 27 27 H 1.08001 * 125.56722 * 179.97438 * 5 4 3 28 28 H 0.97003 * 119.99460 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.94484 * 0.02562 * 11 10 8 30 30 H 1.08004 * 120.05349 * 179.70081 * 12 11 10 31 31 H 0.96993 * 120.00319 * 179.97438 * 17 16 14 32 32 H 1.08007 * 120.05516 * 179.71094 * 22 13 12 33 33 H 1.07997 * 119.94986 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1228 0.0000 4 7 3.5260 0.7110 -0.0058 5 6 3.5573 -0.6213 -0.0047 6 6 2.2823 -1.0906 0.0015 7 7 1.8871 -2.4272 0.0040 8 6 2.8153 -3.4044 0.0006 9 8 3.9977 -3.1200 -0.0051 10 6 2.3969 -4.8195 0.0027 11 6 3.3632 -5.8332 -0.0003 12 6 2.9814 -7.1417 -0.0046 13 6 1.6121 -7.4737 0.0058 14 6 1.2121 -8.8266 0.0069 15 1 0.2418 -9.1031 -0.3785 16 6 2.0743 -9.8122 0.5083 17 7 3.0752 -9.4749 1.2773 18 14 1.7916 -11.6077 0.0770 19 1 1.8671 -11.7807 -1.3959 20 1 2.8327 -12.4430 0.7280 21 1 0.4501 -12.0267 0.5566 22 6 0.6436 -6.4504 0.0089 23 6 1.0347 -5.1447 0.0073 24 1 -0.3634 0.0019 1.0276 25 1 -0.3634 0.8891 -0.5154 26 1 -0.3633 -0.8909 -0.5123 27 1 4.4503 -1.2287 -0.0091 28 1 0.9440 -2.6541 0.0082 29 1 4.4125 -5.5778 -0.0038 30 1 3.7274 -7.9227 -0.0118 31 1 3.6714 -10.1567 1.6244 32 1 -0.4072 -6.7001 0.0122 33 1 0.2930 -4.3597 0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128886010.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = 66.301909 kcal Electronic energy + Delta-G solvation = -19489.452182 eV Core-core repulsion = 16323.510183 eV Total energy + Delta-G solvation = -3165.941999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.17692 -40.95639 -39.02060 -36.53642 -35.73614 -34.86742 -32.23765 -31.50963 -30.45049 -28.53921 -27.76890 -24.62330 -23.41580 -23.12683 -22.25773 -21.23616 -19.51569 -19.21728 -18.10573 -17.40828 -17.31719 -17.05628 -15.96322 -15.80608 -15.77068 -15.21417 -15.08777 -14.50797 -14.19048 -14.02304 -13.78553 -13.72061 -13.30680 -12.95352 -12.83468 -12.70856 -12.47765 -12.35271 -12.13345 -11.81285 -11.37754 -11.13359 -10.96703 -10.78052 -9.65210 -9.57531 -9.35368 -8.82196 -6.51309 0.01679 0.51030 0.83955 1.16372 1.36941 1.41718 1.51466 1.53748 2.05543 2.06721 2.15696 2.73817 3.48047 3.67022 3.70913 3.95312 4.14439 4.29443 4.33324 4.41240 4.54926 4.60035 4.74123 4.96597 5.01418 5.16568 5.22151 5.28320 5.56748 5.61752 5.74290 5.87016 5.99318 6.17481 6.31777 6.54061 6.73933 6.86284 7.03990 7.15892 8.11746 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048435 B = 0.003604 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.958142 B = 7766.440659 C = 8260.593330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.378 5.378 3 N -0.100 5.100 4 N -0.250 5.250 5 C -0.114 4.114 6 C 0.295 3.705 7 N -0.628 5.628 8 C 0.582 3.418 9 O -0.563 6.563 10 C -0.292 4.292 11 C -0.042 4.042 12 C -0.204 4.204 13 C 0.103 3.897 14 C -0.463 4.463 15 H 0.096 0.904 16 C 0.035 3.965 17 N -0.796 5.796 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.243 4.243 23 C -0.033 4.033 24 H 0.105 0.895 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.192 0.808 28 H 0.428 0.572 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.297 0.703 32 H 0.120 0.880 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 5.751 -1.745 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.173 5.173 3 N -0.079 5.079 4 N -0.118 5.118 5 C -0.275 4.275 6 C 0.065 3.935 7 N -0.279 5.279 8 C 0.379 3.621 9 O -0.442 6.442 10 C -0.297 4.297 11 C -0.061 4.061 12 C -0.223 4.223 13 C 0.099 3.901 14 C -0.490 4.490 15 H 0.114 0.886 16 C -0.185 4.185 17 N -0.419 5.419 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.177 1.177 22 C -0.262 4.262 23 C -0.052 4.052 24 H 0.123 0.877 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.209 0.791 28 H 0.269 0.731 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.359 7.358 -1.589 11.248 hybrid contribution -0.243 -2.010 0.068 2.026 sum -8.601 5.348 -1.521 10.241 Atomic orbital electron populations 1.22603 0.70236 1.07438 1.06301 1.50796 1.09726 1.02847 1.53908 1.81854 0.93804 1.05159 1.27066 1.74144 1.13787 1.12034 1.11824 1.23492 0.97717 0.90328 1.15997 1.18791 0.91295 0.82319 1.01046 1.42713 1.12218 0.99759 1.73162 1.18549 0.84303 0.85397 0.73878 1.90605 1.18661 1.83455 1.51469 1.18730 0.94755 0.88979 1.27265 1.20539 0.97685 0.92666 0.95219 1.20942 0.96732 0.94666 1.09983 1.18185 0.92065 0.94081 0.85753 1.20228 1.03077 0.91857 1.33845 0.88621 1.27006 0.93032 1.06774 0.91686 1.69777 1.12584 1.39144 1.20418 0.85159 0.79680 0.74637 0.79879 1.18223 1.19416 1.17682 1.20948 0.98665 0.92582 1.13997 1.20712 0.93298 0.96543 0.94642 0.87677 0.86396 0.86770 0.79107 0.73098 0.88508 0.87799 0.89192 0.86185 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.39 127.77 1.46 2.30 16 2 N -0.38 -9.32 4.09 -365.88 -1.50 -10.82 16 3 N -0.10 -3.13 13.81 37.02 0.51 -2.62 16 4 N -0.25 -8.91 12.32 -58.23 -0.72 -9.63 16 5 C -0.11 -4.06 10.76 83.92 0.90 -3.15 16 6 C 0.30 8.82 7.75 130.97 1.02 9.84 16 7 N -0.63 -17.34 5.37 -310.86 -1.67 -19.01 16 8 C 0.58 21.45 7.73 86.71 0.67 22.12 16 9 O -0.56 -24.13 13.48 -4.06 -0.05 -24.19 16 10 C -0.29 -11.60 5.89 -19.94 -0.12 -11.72 16 11 C -0.04 -1.90 9.52 22.26 0.21 -1.69 16 12 C -0.20 -9.92 8.63 22.47 0.19 -9.73 16 13 C 0.10 4.83 5.57 -21.28 -0.12 4.71 16 14 C -0.46 -21.41 9.04 23.45 0.21 -21.20 16 15 H 0.10 4.08 7.91 -2.91 -0.02 4.06 16 16 C 0.03 1.53 5.14 85.35 0.44 1.97 16 17 N -0.80 -37.32 10.96 21.87 0.24 -37.08 16 18 Si 0.99 32.90 29.60 68.60 2.03 34.93 16 19 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 20 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.25 -8.03 7.11 99.48 0.71 -7.33 16 22 C -0.24 -9.67 9.73 22.47 0.22 -9.45 16 23 C -0.03 -1.15 9.47 22.26 0.21 -0.94 16 24 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.11 0.73 7.65 -2.38 -0.02 0.71 16 27 H 0.19 7.39 5.83 -2.91 -0.02 7.37 16 28 H 0.43 8.29 6.16 -92.71 -0.57 7.72 16 29 H 0.10 4.43 7.63 -2.91 -0.02 4.41 16 30 H 0.10 5.33 6.16 -2.91 -0.02 5.31 16 31 H 0.30 12.55 8.29 -92.71 -0.77 11.78 16 32 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 33 H 0.14 3.25 6.37 -2.91 -0.02 3.23 16 Total: -1.00 -62.62 291.91 4.74 -57.88 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.60 Total: 27.48 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 5.29 Total: -16.94 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -3.13 Total: -79.16 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 32.90 SS G_CDS: 2.03 Total: 34.93 kcal Total: -62.62 4.74 -57.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128886010.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.181 kcal (2) G-P(sol) polarization free energy of solvation -62.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds