Wall clock time and date at job start Mon Mar 30 2020 01:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33278 * 125.56918 * 2 1 4 4 N 1.28731 * 109.99685 * 180.02562 * 3 2 1 5 5 N 1.40298 * 108.18433 * 359.97438 * 4 3 2 6 6 H 0.96995 * 126.84911 * 179.97438 * 5 4 3 7 7 C 1.35834 * 125.56608 * 180.28075 * 2 1 3 8 8 N 1.39437 * 126.67897 * 0.02594 * 7 2 1 9 9 C 1.34770 * 120.00572 * 180.16596 * 8 7 2 10 10 O 1.21573 * 119.99872 * 0.02562 * 9 8 7 11 11 C 1.47841 * 120.00434 * 179.97438 * 9 8 7 12 12 C 1.39935 * 120.03013 * 359.72407 * 11 9 8 13 13 C 1.38325 * 120.35932 * 179.76625 * 12 11 9 14 14 C 1.37746 * 120.41336 * 0.51094 * 13 12 11 15 15 C 1.40752 * 120.04249 * 359.74577 * 14 13 12 16 16 C 1.41446 * 120.17474 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99791 * 24.43443 * 16 15 14 18 18 C 1.39935 * 119.99873 * 204.43299 * 16 15 14 19 19 N 1.30825 * 120.00231 * 17.89681 * 18 16 15 20 20 Si 1.86802 * 119.99732 * 197.89344 * 18 16 15 21 21 H 1.48494 * 109.47484 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47073 * 120.00230 * 20 18 16 23 23 H 1.48500 * 109.47044 * 239.99775 * 20 18 16 24 24 C 1.39014 * 120.02957 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47368 * 89.97804 * 1 2 3 26 26 H 1.09006 * 109.47226 * 209.98154 * 1 2 3 27 27 H 1.09002 * 109.47103 * 329.97555 * 1 2 3 28 28 H 0.97008 * 119.99551 * 0.16701 * 8 7 2 29 29 H 1.08008 * 119.81680 * 0.02562 * 12 11 9 30 30 H 1.08003 * 119.79050 * 180.23385 * 13 12 11 31 31 H 1.08003 * 119.98197 * 179.76607 * 14 13 12 32 32 H 0.96994 * 120.00293 * 180.02562 * 19 18 16 33 33 H 1.08004 * 120.20386 * 359.95843 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2822 1.0841 0.0000 4 7 3.5223 0.7385 -0.0005 5 7 3.5862 -0.6630 -0.0003 6 1 4.3881 -1.2087 -0.0010 7 6 2.2970 -1.1049 -0.0054 8 7 1.8718 -2.4329 -0.0124 9 6 2.7778 -3.4306 -0.0139 10 8 3.9658 -3.1729 -0.0086 11 6 2.3269 -4.8386 -0.0207 12 6 0.9595 -5.1361 -0.0199 13 6 0.5301 -6.4509 -0.0312 14 6 1.4428 -7.4826 -0.0327 15 6 2.8223 -7.2030 -0.0282 16 6 3.7620 -8.2602 -0.0304 17 1 3.4852 -9.2279 -0.4220 18 6 5.0503 -8.0523 0.4749 19 7 5.2901 -7.0291 1.2540 20 14 6.4275 -9.2358 0.0369 21 1 5.9001 -10.3021 -0.8519 22 1 7.5102 -8.4983 -0.6626 23 1 6.9672 -9.8481 1.2774 24 6 3.2609 -5.8682 -0.0217 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5136 27 1 -0.3633 0.8898 0.5142 28 1 0.9238 -2.6385 -0.0163 29 1 0.2355 -4.3346 -0.0147 30 1 -0.5275 -6.6700 -0.0342 31 1 1.0998 -8.5067 -0.0377 32 1 6.1831 -6.8847 1.6039 33 1 4.3173 -5.6435 -0.0181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131789340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:57 Heat of formation + Delta-G solvation = 69.439818 kcal Electronic energy + Delta-G solvation = -19762.203197 eV Core-core repulsion = 16596.397268 eV Total energy + Delta-G solvation = -3165.805929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10547 -39.72214 -37.38508 -35.21425 -33.94880 -33.10906 -31.48938 -30.10251 -29.69587 -26.79625 -25.55783 -24.14079 -22.56849 -21.34087 -20.74202 -20.07199 -18.05821 -17.91416 -16.61957 -16.10458 -15.96221 -15.40763 -14.92429 -14.53291 -14.36756 -13.67950 -13.48926 -13.03043 -12.94686 -12.77497 -12.57758 -11.90992 -11.80104 -11.49021 -11.31056 -11.25724 -11.06311 -10.97046 -10.68700 -10.43156 -10.03384 -9.94441 -9.65819 -9.42045 -8.26947 -7.90546 -7.77657 -7.01677 -4.62946 1.26676 1.89806 2.31590 2.53454 2.61097 2.95835 2.98428 3.01936 3.27944 3.44102 3.76559 4.38083 4.58325 4.73071 4.99079 5.24428 5.34353 5.55412 5.61901 5.72860 5.82270 5.94336 6.00040 6.26228 6.47509 6.68057 6.74768 6.97190 7.09157 7.19188 7.21393 7.43884 7.54690 7.71967 7.90915 8.15224 8.25766 8.29230 8.57414 8.59544 9.93024 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.004688 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.556352 B = 5971.014653 C = 6966.985371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.093 4.093 3 N -0.219 5.219 4 N -0.082 5.082 5 N -0.462 5.462 6 H 0.455 0.545 7 C 0.312 3.688 8 N -0.641 5.641 9 C 0.571 3.429 10 O -0.533 6.533 11 C -0.131 4.131 12 C -0.220 4.220 13 C -0.092 4.092 14 C -0.206 4.206 15 C 0.098 3.902 16 C -0.454 4.454 17 H 0.085 0.915 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.912 3.088 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.085 4.085 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.430 0.570 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.286 0.714 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 4.955 -1.633 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.236 4.236 3 N -0.089 5.089 4 N -0.063 5.063 5 N -0.189 5.189 6 H 0.309 0.691 7 C 0.079 3.921 8 N -0.293 5.293 9 C 0.365 3.635 10 O -0.409 6.409 11 C -0.135 4.135 12 C -0.240 4.240 13 C -0.110 4.110 14 C -0.226 4.226 15 C 0.095 3.905 16 C -0.483 4.483 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.406 5.406 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.105 4.105 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.908 6.509 -1.472 8.284 hybrid contribution 0.192 -1.921 -0.020 1.931 sum -4.716 4.588 -1.492 6.746 Atomic orbital electron populations 1.20021 0.86298 1.03190 1.02655 1.21029 0.97811 0.86302 1.18501 1.74065 0.97828 1.26052 1.10964 1.81923 1.11997 0.86358 1.26021 1.48696 1.07247 1.08306 1.54629 0.69142 1.18700 0.86400 0.86701 1.00259 1.43279 1.12376 1.00621 1.72981 1.19327 0.84651 0.86286 0.73224 1.90545 1.16949 1.84059 1.49373 1.19123 0.94869 0.88945 1.10549 1.20301 0.92696 0.95943 1.15100 1.20449 0.97662 0.92672 1.00212 1.21167 0.93218 0.97321 1.10858 1.17599 0.91721 0.92282 0.88891 1.19685 0.95219 0.98283 1.35069 0.89700 1.26003 1.00187 0.96011 0.92497 1.69766 1.23567 1.26232 1.21020 0.86191 0.80144 0.80633 0.79484 1.18167 1.19436 1.19740 1.21668 0.99262 0.91049 0.98482 0.91043 0.91354 0.90363 0.72899 0.89007 0.88393 0.88227 0.90248 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.22 36.00 0.37 -0.24 16 2 C -0.09 -1.33 7.13 -82.83 -0.59 -1.92 16 3 N -0.22 -3.58 12.32 33.29 0.41 -3.17 16 4 N -0.08 -1.41 13.90 60.35 0.84 -0.57 16 5 N -0.46 -7.73 7.11 31.28 0.22 -7.51 16 6 H 0.46 7.67 6.61 -182.45 -1.21 6.46 16 7 C 0.31 4.86 7.74 -152.37 -1.18 3.68 16 8 N -0.64 -9.58 5.37 -12.15 -0.07 -9.64 16 9 C 0.57 10.90 7.74 -12.33 -0.10 10.81 16 10 O -0.53 -11.36 13.95 5.30 0.07 -11.29 16 11 C -0.13 -2.74 5.87 -105.05 -0.62 -3.35 16 12 C -0.22 -4.02 9.55 -38.91 -0.37 -4.39 16 13 C -0.09 -1.73 10.01 -39.73 -0.40 -2.13 16 14 C -0.21 -4.42 9.78 -38.81 -0.38 -4.80 16 15 C 0.10 2.37 5.57 -106.87 -0.60 1.77 16 16 C -0.45 -11.05 9.05 -37.73 -0.34 -11.40 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 18 C 0.07 1.71 5.14 -17.35 -0.09 1.62 16 19 N -0.78 -19.28 10.96 55.55 0.61 -18.67 16 20 Si 0.91 17.58 29.60 -169.99 -5.03 12.55 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 24 C -0.08 -2.04 8.24 -38.44 -0.32 -2.36 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.53 7.60 -51.93 -0.39 0.14 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.43 5.08 6.08 -40.82 -0.25 4.83 16 29 H 0.09 1.30 6.38 -52.48 -0.33 0.96 16 30 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.10 1.99 8.06 -52.48 -0.42 1.56 16 32 H 0.29 6.48 8.30 -40.82 -0.34 6.14 16 33 H 0.14 3.55 5.74 -52.48 -0.30 3.25 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -27.34 291.55 -6.88 -34.22 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -3.72 Total: 12.40 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -4.60 Total: -12.70 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 2.01 Total: -39.57 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.34 -6.88 -34.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131789340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.658 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds