Wall clock time and date at job start Mon Mar 30 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33278 * 125.56918 * 2 1 4 4 N 1.28731 * 109.99685 * 180.02562 * 3 2 1 5 5 N 1.40298 * 108.18433 * 359.97438 * 4 3 2 6 6 H 0.96995 * 126.84911 * 179.97438 * 5 4 3 7 7 C 1.35834 * 125.56608 * 180.28075 * 2 1 3 8 8 N 1.39437 * 126.67897 * 0.02594 * 7 2 1 9 9 C 1.34770 * 120.00572 * 180.16596 * 8 7 2 10 10 O 1.21573 * 119.99872 * 0.02562 * 9 8 7 11 11 C 1.47841 * 120.00434 * 179.97438 * 9 8 7 12 12 C 1.39935 * 120.03013 * 359.72407 * 11 9 8 13 13 C 1.38325 * 120.35932 * 179.76625 * 12 11 9 14 14 C 1.37746 * 120.41336 * 0.51094 * 13 12 11 15 15 C 1.40752 * 120.04249 * 359.74577 * 14 13 12 16 16 C 1.41446 * 120.17474 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99791 * 24.43443 * 16 15 14 18 18 C 1.39935 * 119.99873 * 204.43299 * 16 15 14 19 19 N 1.30825 * 120.00231 * 17.89681 * 18 16 15 20 20 Si 1.86802 * 119.99732 * 197.89344 * 18 16 15 21 21 H 1.48494 * 109.47484 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47073 * 120.00230 * 20 18 16 23 23 H 1.48500 * 109.47044 * 239.99775 * 20 18 16 24 24 C 1.39014 * 120.02957 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47368 * 89.97804 * 1 2 3 26 26 H 1.09006 * 109.47226 * 209.98154 * 1 2 3 27 27 H 1.09002 * 109.47103 * 329.97555 * 1 2 3 28 28 H 0.97008 * 119.99551 * 0.16701 * 8 7 2 29 29 H 1.08008 * 119.81680 * 0.02562 * 12 11 9 30 30 H 1.08003 * 119.79050 * 180.23385 * 13 12 11 31 31 H 1.08003 * 119.98197 * 179.76607 * 14 13 12 32 32 H 0.96994 * 120.00293 * 180.02562 * 19 18 16 33 33 H 1.08004 * 120.20386 * 359.95843 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2822 1.0841 0.0000 4 7 3.5223 0.7385 -0.0005 5 7 3.5862 -0.6630 -0.0003 6 1 4.3881 -1.2087 -0.0010 7 6 2.2970 -1.1049 -0.0054 8 7 1.8718 -2.4329 -0.0124 9 6 2.7778 -3.4306 -0.0139 10 8 3.9658 -3.1729 -0.0086 11 6 2.3269 -4.8386 -0.0207 12 6 0.9595 -5.1361 -0.0199 13 6 0.5301 -6.4509 -0.0312 14 6 1.4428 -7.4826 -0.0327 15 6 2.8223 -7.2030 -0.0282 16 6 3.7620 -8.2602 -0.0304 17 1 3.4852 -9.2279 -0.4220 18 6 5.0503 -8.0523 0.4749 19 7 5.2901 -7.0291 1.2540 20 14 6.4275 -9.2358 0.0369 21 1 5.9001 -10.3021 -0.8519 22 1 7.5102 -8.4983 -0.6626 23 1 6.9672 -9.8481 1.2774 24 6 3.2609 -5.8682 -0.0217 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5136 27 1 -0.3633 0.8898 0.5142 28 1 0.9238 -2.6385 -0.0163 29 1 0.2355 -4.3346 -0.0147 30 1 -0.5275 -6.6700 -0.0342 31 1 1.0998 -8.5067 -0.0377 32 1 6.1831 -6.8847 1.6039 33 1 4.3173 -5.6435 -0.0181 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131789340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:56 Heat of formation + Delta-G solvation = 52.186680 kcal Electronic energy + Delta-G solvation = -19762.951349 eV Core-core repulsion = 16596.397268 eV Total energy + Delta-G solvation = -3166.554082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.35918 -41.20426 -39.00200 -36.61458 -35.61808 -34.28282 -32.83762 -31.59155 -31.30475 -27.87834 -27.21950 -25.56827 -23.96329 -22.92636 -22.03122 -21.57035 -19.63824 -19.21970 -18.10505 -17.51744 -17.23120 -17.02714 -16.49723 -15.96905 -15.90542 -15.15577 -14.79361 -14.58344 -14.34350 -13.71919 -13.56067 -13.40696 -13.06082 -12.95896 -12.84710 -12.74173 -12.58276 -12.26649 -12.19673 -12.07646 -11.55913 -11.28473 -11.23303 -11.11919 -9.69174 -9.44813 -9.33861 -8.71910 -6.41986 -0.14469 0.43529 0.96101 1.05989 1.32020 1.36271 1.45200 1.51079 1.91885 1.93105 2.16344 2.70440 3.44600 3.63195 3.63887 3.69832 3.99555 4.40304 4.45326 4.53402 4.82975 4.85982 4.90696 4.99157 5.03741 5.12103 5.26079 5.38151 5.44085 5.72368 5.84490 5.89903 5.98830 6.07897 6.26038 6.54045 6.70319 6.84963 6.88186 7.05496 8.24835 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025858 B = 0.004688 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.556352 B = 5971.014653 C = 6966.985371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.073 4.073 3 N -0.235 5.235 4 N -0.104 5.104 5 N -0.469 5.469 6 H 0.451 0.549 7 C 0.295 3.705 8 N -0.615 5.615 9 C 0.572 3.428 10 O -0.563 6.563 11 C -0.138 4.138 12 C -0.191 4.191 13 C -0.092 4.092 14 C -0.209 4.209 15 C 0.066 3.934 16 C -0.495 4.495 17 H 0.084 0.916 18 C 0.033 3.967 19 N -0.824 5.824 20 Si 0.978 3.022 21 H -0.251 1.251 22 H -0.271 1.271 23 H -0.266 1.266 24 C -0.124 4.124 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.447 0.553 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.287 0.713 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 5.547 -1.953 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.217 4.217 3 N -0.104 5.104 4 N -0.084 5.084 5 N -0.195 5.195 6 H 0.304 0.696 7 C 0.063 3.937 8 N -0.268 5.268 9 C 0.365 3.635 10 O -0.441 6.441 11 C -0.142 4.142 12 C -0.211 4.211 13 C -0.110 4.110 14 C -0.229 4.229 15 C 0.064 3.936 16 C -0.524 4.524 17 H 0.102 0.898 18 C -0.182 4.182 19 N -0.450 5.450 20 Si 0.799 3.201 21 H -0.175 1.175 22 H -0.196 1.196 23 H -0.191 1.191 24 C -0.145 4.145 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.292 0.708 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.215 7.133 -1.796 11.026 hybrid contribution 0.936 -1.938 0.057 2.153 sum -7.278 5.195 -1.739 9.110 Atomic orbital electron populations 1.20310 0.82669 1.05042 1.04509 1.21797 0.99736 0.84854 1.15357 1.74085 0.97866 1.26888 1.11546 1.81936 1.12717 0.86489 1.27266 1.48782 1.07847 1.08370 1.54512 0.69617 1.18934 0.86258 0.87029 1.01510 1.42841 1.12479 0.99643 1.71833 1.19113 0.84664 0.86503 0.73259 1.90545 1.18498 1.84450 1.50633 1.19353 0.95795 0.89198 1.09827 1.20934 0.92235 0.97561 1.10352 1.20964 0.99521 0.92045 0.98498 1.21494 0.92636 0.98995 1.09726 1.17917 0.93252 0.92431 0.90018 1.19911 0.96629 0.98678 1.37185 0.89753 1.26767 1.02109 0.97425 0.91901 1.69854 1.23937 1.28373 1.22849 0.85211 0.77045 0.78580 0.79294 1.17459 1.19640 1.19063 1.21468 0.98576 0.92313 1.02093 0.89056 0.88758 0.89344 0.70816 0.83534 0.83794 0.87236 0.90262 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.22 71.23 0.73 -0.25 16 2 C -0.07 -1.88 7.13 41.78 0.30 -1.58 16 3 N -0.24 -7.30 12.32 -48.58 -0.60 -7.90 16 4 N -0.10 -3.51 13.90 37.02 0.51 -3.00 16 5 N -0.47 -15.55 7.11 -54.96 -0.39 -15.94 16 6 H 0.45 15.61 6.61 -213.20 -1.41 14.20 16 7 C 0.30 8.56 7.74 130.94 1.01 9.58 16 8 N -0.61 -16.55 5.37 -310.62 -1.67 -18.22 16 9 C 0.57 21.28 7.74 86.79 0.67 21.95 16 10 O -0.56 -24.61 13.95 -3.95 -0.06 -24.67 16 11 C -0.14 -5.62 5.87 -20.14 -0.12 -5.73 16 12 C -0.19 -6.15 9.55 22.70 0.22 -5.94 16 13 C -0.09 -3.10 10.01 22.17 0.22 -2.88 16 14 C -0.21 -8.71 9.78 22.77 0.22 -8.49 16 15 C 0.07 3.29 5.57 -21.32 -0.12 3.17 16 16 C -0.49 -25.21 9.05 23.47 0.21 -25.00 16 17 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 18 C 0.03 1.63 5.14 85.25 0.44 2.07 16 19 N -0.82 -43.26 10.96 21.82 0.24 -43.02 16 20 Si 0.98 37.64 29.60 68.60 2.03 39.67 16 21 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 24 C -0.12 -6.19 8.24 23.01 0.19 -6.00 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 0.91 7.60 -2.38 -0.02 0.89 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.45 8.26 6.08 -92.70 -0.56 7.69 16 29 H 0.15 3.08 6.38 -2.91 -0.02 3.06 16 30 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 33 H 0.10 5.75 5.74 -2.91 -0.02 5.74 16 Total: -1.00 -64.04 291.55 3.26 -60.78 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.78 Total: 31.40 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 3.97 Total: -19.10 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -1.90 Total: -88.08 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.67 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -64.04 3.26 -60.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131789340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.963 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds