Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28429 * 125.06867 * 2 1 4 4 C 1.31673 * 110.81266 * 180.14983 * 3 2 1 5 5 C 1.48395 * 126.20778 * 179.84737 * 4 3 2 6 6 C 1.39760 * 120.90599 * 179.40441 * 5 4 3 7 7 C 1.37962 * 119.02601 * 180.27410 * 6 5 4 8 8 N 1.31932 * 120.87913 * 0.02562 * 7 6 5 9 9 C 1.31936 * 121.99960 * 0.02562 * 8 7 6 10 10 C 1.37966 * 120.88105 * 359.97438 * 9 8 7 11 11 C 1.40680 * 107.58659 * 359.58641 * 4 3 2 12 12 C 1.36730 * 125.06432 * 179.68742 * 2 1 3 13 13 C 1.47050 * 126.78022 * 0.02562 * 12 2 1 14 14 O 1.21664 * 120.00145 * 354.28858 * 13 12 2 15 15 N 1.34778 * 119.99863 * 174.28639 * 13 12 2 16 16 C 1.36839 * 120.00072 * 185.17707 * 15 13 12 17 17 H 1.08004 * 120.00185 * 0.02562 * 16 15 13 18 18 C 1.39050 * 120.00350 * 180.02562 * 16 15 13 19 19 N 1.31363 * 120.00252 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46938 * 89.99687 * 20 18 16 22 22 H 1.48492 * 109.47508 * 209.99811 * 20 18 16 23 23 H 1.48508 * 109.47096 * 330.00166 * 20 18 16 24 24 H 1.08998 * 109.47260 * 274.18361 * 1 2 3 25 25 H 1.09003 * 109.47269 * 34.18594 * 1 2 3 26 26 H 1.08996 * 109.47171 * 154.18457 * 1 2 3 27 27 H 1.08007 * 120.48546 * 0.25842 * 6 5 4 28 28 H 1.08001 * 119.56166 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.56041 * 180.02562 * 9 8 7 30 30 H 1.07997 * 120.48858 * 179.97438 * 10 9 8 31 31 H 1.08001 * 127.34922 * 180.20509 * 11 4 3 32 32 H 0.97001 * 120.00382 * 5.18505 * 15 13 12 33 33 H 0.97003 * 119.99967 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0511 0.0000 4 6 3.4790 0.7269 -0.0032 5 6 4.6235 1.6715 -0.0074 6 6 5.9404 1.2037 0.0018 7 6 6.9750 2.1164 0.0033 8 7 6.7337 3.4135 -0.0035 9 6 5.5058 3.8962 -0.0113 10 6 4.4136 3.0533 -0.0133 11 6 3.5608 -0.6775 0.0042 12 6 2.2505 -1.1191 0.0061 13 6 1.7923 -2.5164 0.0132 14 8 0.6064 -2.7672 0.1189 15 7 2.6859 -3.5192 -0.0975 16 6 2.2531 -4.8135 -0.1975 17 1 1.1953 -5.0314 -0.1883 18 6 3.1751 -5.8481 -0.3112 19 7 2.7595 -7.0906 -0.4078 20 14 5.0046 -5.4714 -0.3265 21 1 5.5259 -5.4921 1.0639 22 1 5.7139 -6.4941 -1.1363 23 1 5.2285 -4.1282 -0.9191 24 1 -0.3634 0.0750 1.0249 25 1 -0.3634 0.8501 -0.5774 26 1 -0.3633 -0.9251 -0.4475 27 1 6.1452 0.1433 0.0081 28 1 7.9960 1.7645 0.0100 29 1 5.3537 4.9654 -0.0171 30 1 3.4113 3.4552 -0.0193 31 1 4.4560 -1.2817 0.0071 32 1 3.6360 -3.3235 -0.1061 33 1 3.4028 -7.8124 -0.4867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = 80.700644 kcal Electronic energy + Delta-G solvation = -19610.672216 eV Core-core repulsion = 16445.354593 eV Total energy + Delta-G solvation = -3165.317623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.27241 -39.94648 -38.26606 -34.61333 -33.94829 -32.20801 -31.54351 -31.38414 -30.44105 -26.94857 -25.44640 -23.76787 -23.49119 -22.01436 -20.66972 -19.47859 -18.80790 -17.00767 -16.24875 -16.20717 -16.04399 -15.71539 -15.44054 -14.86669 -14.03390 -13.97126 -13.76728 -13.63598 -13.38871 -13.21566 -12.92958 -12.67993 -12.46964 -12.07402 -11.77034 -11.39133 -10.76793 -10.63639 -10.42946 -10.21797 -9.86378 -9.59934 -9.23873 -8.93106 -8.82766 -8.47770 -8.40372 -6.59293 -4.05616 0.87328 1.08704 1.69284 2.63552 2.84909 2.91077 2.95417 3.02533 3.86838 3.89074 3.94594 4.14108 4.37771 4.44149 4.63942 4.98862 5.02795 5.05796 5.11130 5.32649 5.37510 5.44791 5.52541 5.63889 5.72869 5.75992 5.91576 5.96030 6.29616 6.55936 6.61894 6.92649 7.27098 7.83961 7.89051 8.14431 8.32586 8.64884 9.11881 9.50315 10.51532 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.005283 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.644924 B = 5298.248624 C = 6772.174067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.257 5.257 3 N -0.275 5.275 4 C 0.044 3.956 5 C 0.056 3.944 6 C -0.160 4.160 7 C 0.100 3.900 8 N -0.493 5.493 9 C 0.097 3.903 10 C -0.156 4.156 11 C -0.203 4.203 12 C 0.014 3.986 13 C 0.497 3.503 14 O -0.581 6.581 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.126 0.874 18 C 0.049 3.951 19 N -0.859 5.859 20 Si 0.876 3.124 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.264 1.264 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.376 0.624 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 15.805 0.328 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.044 5.044 3 N -0.108 5.108 4 C -0.110 4.110 5 C 0.046 3.954 6 C -0.181 4.181 7 C -0.057 4.057 8 N -0.203 5.203 9 C -0.059 4.059 10 C -0.177 4.177 11 C -0.232 4.232 12 C -0.114 4.114 13 C 0.284 3.716 14 O -0.467 6.467 15 N -0.186 5.186 16 C -0.433 4.433 17 H 0.144 0.856 18 C -0.158 4.158 19 N -0.497 5.497 20 Si 0.702 3.298 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.190 1.190 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.137 0.863 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.173 0.827 30 H 0.157 0.843 31 H 0.174 0.826 32 H 0.210 0.790 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.510 16.838 0.358 17.436 hybrid contribution 1.160 -1.238 -0.015 1.697 sum 5.670 15.601 0.343 16.603 Atomic orbital electron populations 1.22380 0.72266 1.06161 1.04450 1.45482 1.07875 1.01636 1.49385 1.73205 1.02966 1.13817 1.20854 1.19992 0.90029 0.91960 1.09046 1.18109 0.90597 0.91712 0.94988 1.22150 0.92089 1.01927 1.01937 1.22636 0.99387 0.88209 0.95430 1.67625 1.24124 1.16005 1.12533 1.22653 0.87400 1.00288 0.95593 1.22211 1.01210 0.92955 1.01316 1.22064 0.96205 0.93843 1.11062 1.21875 0.90310 0.90887 1.08302 1.16213 0.86419 0.81795 0.87165 1.90637 1.15812 1.83521 1.56730 1.41911 1.07309 1.06728 1.62661 1.19509 0.97255 0.79112 1.47417 0.85620 1.25119 0.99085 0.94876 0.96710 1.69587 1.35665 0.98856 1.45575 0.86693 0.84492 0.79144 0.79511 1.18982 1.19553 1.18966 0.89956 0.89534 0.86269 0.84317 0.82540 0.82736 0.84293 0.82582 0.79046 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.86 59.84 0.65 1.88 16 2 N -0.26 -4.45 3.75 -63.93 -0.24 -4.69 16 3 N -0.27 -4.58 11.67 33.40 0.39 -4.19 16 4 C 0.04 0.71 7.01 -82.83 -0.58 0.13 16 5 C 0.06 0.76 5.91 -104.58 -0.62 0.14 16 6 C -0.16 -1.88 9.66 -39.11 -0.38 -2.26 16 7 C 0.10 1.10 11.17 -17.61 -0.20 0.90 16 8 N -0.49 -6.03 10.35 -13.35 -0.14 -6.17 16 9 C 0.10 1.07 11.17 -17.61 -0.20 0.87 16 10 C -0.16 -1.88 9.79 -39.11 -0.38 -2.27 16 11 C -0.20 -3.39 9.89 -38.65 -0.38 -3.78 16 12 C 0.01 0.28 6.94 -82.10 -0.57 -0.29 16 13 C 0.50 11.25 7.73 -12.69 -0.10 11.15 16 14 O -0.58 -14.62 14.24 5.22 0.07 -14.55 16 15 N -0.55 -12.68 5.07 -12.07 -0.06 -12.74 16 16 C -0.30 -8.09 10.16 -15.02 -0.15 -8.24 16 17 H 0.13 3.79 7.39 -52.48 -0.39 3.40 16 18 C 0.05 1.24 5.50 -17.45 -0.10 1.15 16 19 N -0.86 -23.42 13.95 55.50 0.77 -22.64 16 20 Si 0.88 18.01 27.74 -169.99 -4.72 13.29 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -4.93 6.52 56.52 0.37 -4.56 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.12 1.88 6.20 -51.93 -0.32 1.56 16 27 H 0.14 1.41 7.25 -52.48 -0.38 1.03 16 28 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.14 1.56 7.95 -52.49 -0.42 1.14 16 31 H 0.16 2.24 7.04 -52.49 -0.37 1.87 16 32 H 0.38 7.64 4.78 -40.82 -0.20 7.45 16 33 H 0.28 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -31.18 294.61 -5.41 -36.59 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -2.93 Total: 11.26 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.00 Total: -0.61 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.73 Total: -50.43 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.07 Total: -14.55 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -4.72 Total: 13.29 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.18 -5.41 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.288 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds