Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28429 * 125.06867 * 2 1 4 4 C 1.31673 * 110.81266 * 180.14983 * 3 2 1 5 5 C 1.48395 * 126.20778 * 179.84737 * 4 3 2 6 6 C 1.39760 * 120.90599 * 179.40441 * 5 4 3 7 7 C 1.37962 * 119.02601 * 180.27410 * 6 5 4 8 8 N 1.31932 * 120.87913 * 0.02562 * 7 6 5 9 9 C 1.31936 * 121.99960 * 0.02562 * 8 7 6 10 10 C 1.37966 * 120.88105 * 359.97438 * 9 8 7 11 11 C 1.40680 * 107.58659 * 359.58641 * 4 3 2 12 12 C 1.36730 * 125.06432 * 179.68742 * 2 1 3 13 13 C 1.47050 * 126.78022 * 0.02562 * 12 2 1 14 14 O 1.21664 * 120.00145 * 354.28858 * 13 12 2 15 15 N 1.34778 * 119.99863 * 174.28639 * 13 12 2 16 16 C 1.36839 * 120.00072 * 185.17707 * 15 13 12 17 17 H 1.08004 * 120.00185 * 0.02562 * 16 15 13 18 18 C 1.39050 * 120.00350 * 180.02562 * 16 15 13 19 19 N 1.31363 * 120.00252 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46938 * 89.99687 * 20 18 16 22 22 H 1.48492 * 109.47508 * 209.99811 * 20 18 16 23 23 H 1.48508 * 109.47096 * 330.00166 * 20 18 16 24 24 H 1.08998 * 109.47260 * 274.18361 * 1 2 3 25 25 H 1.09003 * 109.47269 * 34.18594 * 1 2 3 26 26 H 1.08996 * 109.47171 * 154.18457 * 1 2 3 27 27 H 1.08007 * 120.48546 * 0.25842 * 6 5 4 28 28 H 1.08001 * 119.56166 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.56041 * 180.02562 * 9 8 7 30 30 H 1.07997 * 120.48858 * 179.97438 * 10 9 8 31 31 H 1.08001 * 127.34922 * 180.20509 * 11 4 3 32 32 H 0.97001 * 120.00382 * 5.18505 * 15 13 12 33 33 H 0.97003 * 119.99967 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2028 1.0511 0.0000 4 6 3.4790 0.7269 -0.0032 5 6 4.6235 1.6715 -0.0074 6 6 5.9404 1.2037 0.0018 7 6 6.9750 2.1164 0.0033 8 7 6.7337 3.4135 -0.0035 9 6 5.5058 3.8962 -0.0113 10 6 4.4136 3.0533 -0.0133 11 6 3.5608 -0.6775 0.0042 12 6 2.2505 -1.1191 0.0061 13 6 1.7923 -2.5164 0.0132 14 8 0.6064 -2.7672 0.1189 15 7 2.6859 -3.5192 -0.0975 16 6 2.2531 -4.8135 -0.1975 17 1 1.1953 -5.0314 -0.1883 18 6 3.1751 -5.8481 -0.3112 19 7 2.7595 -7.0906 -0.4078 20 14 5.0046 -5.4714 -0.3265 21 1 5.5259 -5.4921 1.0639 22 1 5.7139 -6.4941 -1.1363 23 1 5.2285 -4.1282 -0.9191 24 1 -0.3634 0.0750 1.0249 25 1 -0.3634 0.8501 -0.5774 26 1 -0.3633 -0.9251 -0.4475 27 1 6.1452 0.1433 0.0081 28 1 7.9960 1.7645 0.0100 29 1 5.3537 4.9654 -0.0171 30 1 3.4113 3.4552 -0.0193 31 1 4.4560 -1.2817 0.0071 32 1 3.6360 -3.3235 -0.1061 33 1 3.4028 -7.8124 -0.4867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136559690.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = 58.784850 kcal Electronic energy + Delta-G solvation = -19611.622556 eV Core-core repulsion = 16445.354593 eV Total energy + Delta-G solvation = -3166.267964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.60089 -40.83550 -40.09115 -36.34611 -35.25471 -34.02160 -32.72787 -32.33233 -31.77400 -28.13179 -27.26392 -24.84824 -24.47284 -23.44614 -21.98701 -21.25394 -20.24718 -18.57705 -17.53101 -17.37137 -17.28893 -16.93801 -16.59503 -16.34466 -15.47601 -15.43522 -15.02129 -14.84370 -14.70653 -14.42627 -14.33811 -14.21720 -13.79764 -13.32837 -13.04807 -12.66962 -12.49706 -12.02361 -11.89989 -11.65378 -11.48579 -10.79483 -10.45969 -10.41865 -10.21389 -10.06229 -9.58597 -8.52284 -6.11278 -0.11207 0.22876 0.25866 1.29492 1.34519 1.37404 1.44155 1.69031 2.17283 2.19501 2.61805 3.00526 3.11713 3.16635 3.52581 3.65035 3.88178 4.05456 4.13215 4.22553 4.24864 4.28539 4.42664 4.52958 4.68806 4.72581 4.94487 4.96944 5.31088 5.32852 5.42442 5.64427 5.77711 5.80400 6.39950 6.67994 6.87456 7.05641 7.19000 7.67779 8.63061 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.005283 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.644924 B = 5298.248624 C = 6772.174067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.259 5.259 3 N -0.271 5.271 4 C 0.045 3.955 5 C 0.030 3.970 6 C -0.158 4.158 7 C 0.099 3.901 8 N -0.509 5.509 9 C 0.097 3.903 10 C -0.159 4.159 11 C -0.184 4.184 12 C -0.020 4.020 13 C 0.508 3.492 14 O -0.614 6.614 15 N -0.552 5.552 16 C -0.331 4.331 17 H 0.068 0.932 18 C -0.001 4.001 19 N -0.913 5.913 20 Si 0.951 3.049 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.228 1.228 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.157 0.843 28 H 0.187 0.813 29 H 0.182 0.818 30 H 0.143 0.857 31 H 0.184 0.816 32 H 0.392 0.608 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.653 18.495 0.344 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.047 5.047 3 N -0.106 5.106 4 C -0.109 4.109 5 C 0.021 3.979 6 C -0.180 4.180 7 C -0.057 4.057 8 N -0.219 5.219 9 C -0.059 4.059 10 C -0.180 4.180 11 C -0.213 4.213 12 C -0.148 4.148 13 C 0.295 3.705 14 O -0.501 6.501 15 N -0.190 5.190 16 C -0.461 4.461 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.551 5.551 20 Si 0.769 3.231 21 H -0.176 1.176 22 H -0.193 1.193 23 H -0.151 1.151 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.115 0.885 27 H 0.175 0.825 28 H 0.203 0.797 29 H 0.199 0.801 30 H 0.161 0.839 31 H 0.201 0.799 32 H 0.228 0.772 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.661 19.547 0.374 20.999 hybrid contribution 0.081 -1.873 -0.003 1.875 sum 7.742 17.674 0.371 19.299 Atomic orbital electron populations 1.22522 0.71059 1.06374 1.05679 1.45771 1.08761 1.01196 1.48952 1.73227 1.03521 1.13303 1.20536 1.20379 0.90383 0.92158 1.07981 1.18226 0.90547 0.91973 0.97201 1.22386 0.91351 1.03117 1.01115 1.23129 1.00623 0.87710 0.94214 1.67704 1.24634 1.16798 1.12771 1.23070 0.86738 1.01537 0.94516 1.22322 1.01878 0.92629 1.01177 1.22435 0.95944 0.94510 1.08418 1.21422 0.91851 0.89462 1.12096 1.16757 0.85876 0.83247 0.84594 1.90619 1.17547 1.84661 1.57264 1.41625 1.08127 1.05414 1.63821 1.19057 0.95231 0.81430 1.50341 0.91359 1.26090 1.05078 0.93957 0.95164 1.69736 1.38059 1.00296 1.47033 0.85563 0.76302 0.80781 0.80408 1.17587 1.19252 1.15133 0.88701 0.86328 0.88528 0.82536 0.79657 0.80070 0.83912 0.79912 0.77162 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.86 127.77 1.39 3.67 16 2 N -0.26 -8.67 3.75 -356.16 -1.34 -10.01 16 3 N -0.27 -8.49 11.67 -48.26 -0.56 -9.05 16 4 C 0.05 1.33 7.01 42.47 0.30 1.62 16 5 C 0.03 0.73 5.91 -19.84 -0.12 0.61 16 6 C -0.16 -3.12 9.66 22.57 0.22 -2.90 16 7 C 0.10 1.80 11.17 84.61 0.95 2.74 16 8 N -0.51 -10.70 10.35 -196.13 -2.03 -12.73 16 9 C 0.10 1.84 11.17 84.61 0.95 2.78 16 10 C -0.16 -3.40 9.79 22.57 0.22 -3.17 16 11 C -0.18 -5.66 9.89 22.88 0.23 -5.43 16 12 C -0.02 -0.76 6.94 40.70 0.28 -0.48 16 13 C 0.51 23.35 7.73 86.55 0.67 24.02 16 14 O -0.61 -32.35 14.24 -4.24 -0.06 -32.41 16 15 N -0.55 -25.57 5.07 -310.32 -1.57 -27.14 16 16 C -0.33 -18.45 10.16 84.11 0.85 -17.60 16 17 H 0.07 4.48 7.39 -2.91 -0.02 4.46 16 18 C 0.00 -0.05 5.50 84.96 0.47 0.42 16 19 N -0.91 -51.73 13.95 21.68 0.30 -51.43 16 20 Si 0.95 35.89 27.74 68.60 1.90 37.80 16 21 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.10 3.14 6.20 -2.39 -0.01 3.13 16 27 H 0.16 2.43 7.25 -2.91 -0.02 2.41 16 28 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.14 2.86 7.95 -2.91 -0.02 2.83 16 31 H 0.18 4.45 7.04 -2.91 -0.02 4.43 16 32 H 0.39 15.17 4.78 -92.71 -0.44 14.73 16 33 H 0.29 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.49 294.61 3.70 -67.79 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.66 Total: 30.90 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.40 Total: 6.28 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -5.20 Total: -110.36 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.06 Total: -32.41 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 1.90 Total: 37.80 kcal Total: -71.49 3.70 -67.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559690.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.571 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds