Wall clock time and date at job start Mon Mar 30 2020 00:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99733 * 2 1 4 4 H 1.48499 * 109.47218 * 269.99781 * 3 2 1 5 5 H 1.48498 * 109.47541 * 30.00197 * 3 2 1 6 6 H 1.48510 * 109.46984 * 150.00048 * 3 2 1 7 7 C 1.37868 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99937 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00143 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47349 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99572 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00008 * 180.02562 * 10 9 7 13 13 C 1.39416 * 119.99576 * 180.02562 * 12 10 9 14 14 C 1.36086 * 126.28466 * 359.97438 * 13 12 10 15 15 C 1.39807 * 107.88185 * 180.02562 * 14 13 12 16 16 N 1.30856 * 108.49584 * 359.71607 * 15 14 13 17 17 N 1.36163 * 126.27994 * 180.02562 * 13 12 10 18 18 C 1.39870 * 126.11778 * 359.97438 * 17 13 12 19 19 C 1.39340 * 120.85458 * 145.00408 * 18 17 13 20 20 C 1.37988 * 119.08009 * 180.02562 * 19 18 17 21 21 N 1.31954 * 120.83162 * 359.97438 * 20 19 18 22 22 C 1.31944 * 121.88848 * 0.02562 * 21 20 19 23 23 C 1.37996 * 120.83251 * 359.97438 * 22 21 20 24 24 H 0.97001 * 119.99670 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47223 * 60.00559 * 9 7 2 26 26 H 1.08998 * 109.47393 * 300.00287 * 9 7 2 27 27 H 0.96991 * 120.00012 * 359.97438 * 12 10 9 28 28 H 1.07995 * 126.06034 * 0.02562 * 14 13 12 29 29 H 1.07997 * 125.75548 * 180.02562 * 15 14 13 30 30 H 1.08004 * 120.46223 * 0.02562 * 19 18 17 31 31 H 1.08004 * 119.58702 * 179.97438 * 20 19 18 32 32 H 1.07998 * 119.58713 * 179.97438 * 22 21 20 33 33 H 1.07994 * 120.46132 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 8 3.2257 -3.5367 0.0010 12 7 5.3390 -2.8610 0.0020 13 6 5.8037 -4.1755 0.0013 14 6 5.0379 -5.3004 0.0002 15 6 5.8961 -6.4040 0.0005 16 7 7.1306 -5.9699 -0.0045 17 7 7.1071 -4.5693 0.0027 18 6 8.2231 -3.7261 0.0044 19 6 9.3832 -4.0776 0.6916 20 6 10.4624 -3.2180 0.6693 21 7 10.4049 -2.0774 0.0083 22 6 9.3249 -1.7094 -0.6543 23 6 8.2034 -2.5131 -0.6810 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8753 -0.6803 -0.8888 27 1 5.9693 -2.1238 0.0024 28 1 3.9584 -5.3346 -0.0007 29 1 5.5917 -7.4402 -0.0006 30 1 9.4370 -5.0098 1.2343 31 1 11.3655 -3.4820 1.1995 32 1 9.3184 -0.7673 -1.1823 33 1 7.3228 -2.2062 -1.2256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:10 Heat of formation + Delta-G solvation = 96.016832 kcal Electronic energy + Delta-G solvation = -19784.650273 eV Core-core repulsion = 16619.996809 eV Total energy + Delta-G solvation = -3164.653464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.84125 -40.13537 -39.05349 -34.93775 -34.12161 -33.05664 -31.64362 -30.43875 -30.00888 -28.56586 -24.41599 -24.10079 -23.67093 -21.53417 -21.00852 -19.63298 -18.85211 -17.16015 -16.80311 -16.49790 -15.93205 -15.63359 -15.45040 -14.89840 -14.55421 -14.35545 -14.03662 -13.90404 -13.74258 -13.47066 -13.01738 -12.38773 -12.13314 -11.97619 -11.11161 -10.93463 -10.87012 -10.70488 -10.58054 -10.17173 -9.95368 -9.61093 -9.46105 -9.16375 -8.79509 -8.72498 -8.05482 -6.17495 -4.19811 0.52928 0.72142 1.87898 1.96701 2.79255 3.14900 3.16928 3.20787 3.26595 3.31811 3.45672 4.09417 4.26662 4.27140 4.47071 4.67979 4.83559 5.01691 5.12179 5.12669 5.31580 5.39480 5.53626 5.67767 5.82679 6.04672 6.13742 6.22842 6.36061 6.63636 6.76491 7.01246 7.24347 7.47221 7.58884 7.73237 8.34942 8.57967 9.00092 9.38411 10.94924 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.005164 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.899132 B = 5420.933993 C = 6742.997562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.073 3.927 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.095 0.905 9 C -0.021 4.021 10 C 0.526 3.474 11 O -0.488 6.488 12 N -0.666 5.666 13 C 0.326 3.674 14 C -0.277 4.277 15 C 0.080 3.920 16 N -0.298 5.298 17 N -0.358 5.358 18 C 0.215 3.785 19 C -0.171 4.171 20 C 0.123 3.877 21 N -0.493 5.493 22 C 0.130 3.870 23 C -0.207 4.207 24 H 0.267 0.733 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.407 0.593 28 H 0.183 0.817 29 H 0.193 0.807 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.024 -5.445 0.128 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.113 0.887 9 C -0.061 4.061 10 C 0.316 3.684 11 O -0.358 6.358 12 N -0.316 5.316 13 C 0.110 3.890 14 C -0.309 4.309 15 C -0.108 4.108 16 N -0.117 5.117 17 N -0.140 5.140 18 C 0.114 3.886 19 C -0.193 4.193 20 C -0.034 4.034 21 N -0.203 5.203 22 C -0.027 4.027 23 C -0.230 4.230 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.244 0.756 28 H 0.200 0.800 29 H 0.210 0.790 30 H 0.164 0.836 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 20.138 -5.658 0.133 20.918 hybrid contribution -0.874 0.933 -0.035 1.279 sum 19.264 -4.725 0.098 19.835 Atomic orbital electron populations 1.69877 1.06165 1.27103 1.49656 1.24938 0.94816 0.98724 0.94469 0.86917 0.80327 0.84085 0.78723 1.19929 1.20870 1.19103 1.20903 0.86994 0.96015 1.51977 0.88695 1.19729 1.00150 0.87046 0.99186 1.21875 0.78551 0.94410 0.73557 1.90540 1.54156 1.46214 1.44845 1.44031 1.09930 1.03500 1.74170 1.18536 0.83551 0.87634 0.99313 1.21867 1.02443 0.88372 1.18178 1.24007 0.89725 1.00583 0.96452 1.77544 1.21547 0.84494 1.28072 1.45941 1.01625 1.05062 1.61406 1.17741 0.86540 0.89449 0.94864 1.22039 0.93290 1.02936 1.01078 1.22759 0.97485 0.88667 0.94484 1.67736 1.27294 1.16995 1.08243 1.22704 0.87030 0.98729 0.94215 1.22149 1.02387 0.95858 1.02596 0.92325 0.92911 0.93333 0.75622 0.80000 0.79034 0.83626 0.81785 0.81507 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 19.65 27.47 -169.99 -4.67 14.98 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -5.51 6.54 56.52 0.37 -5.14 16 7 C -0.52 -14.27 9.48 -34.44 -0.33 -14.59 16 8 H 0.10 2.95 7.00 -52.48 -0.37 2.59 16 9 C -0.02 -0.46 4.53 -29.03 -0.13 -0.59 16 10 C 0.53 10.64 7.79 -10.98 -0.09 10.56 16 11 O -0.49 -11.40 12.59 5.55 0.07 -11.33 16 12 N -0.67 -10.74 5.06 -11.27 -0.06 -10.80 16 13 C 0.33 5.35 7.44 -152.41 -1.13 4.22 16 14 C -0.28 -4.59 9.65 -39.77 -0.38 -4.98 16 15 C 0.08 1.09 12.00 -17.38 -0.21 0.89 16 16 N -0.30 -4.42 12.36 30.61 0.38 -4.04 16 17 N -0.36 -5.33 3.77 -9.56 -0.04 -5.36 16 18 C 0.22 2.74 6.43 -83.37 -0.54 2.20 16 19 C -0.17 -1.85 9.89 -39.26 -0.39 -2.24 16 20 C 0.12 1.15 11.17 -17.59 -0.20 0.96 16 21 N -0.49 -5.24 10.36 -13.32 -0.14 -5.38 16 22 C 0.13 1.26 11.17 -17.59 -0.20 1.06 16 23 C -0.21 -2.25 8.54 -39.26 -0.34 -2.58 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.05 1.07 7.20 -51.93 -0.37 0.69 16 26 H 0.05 0.95 7.57 -51.93 -0.39 0.56 16 27 H 0.41 5.33 6.12 -40.82 -0.25 5.08 16 28 H 0.18 3.32 5.83 -52.49 -0.31 3.02 16 29 H 0.19 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.14 1.44 6.41 -52.49 -0.34 1.10 16 LS Contribution 290.54 15.07 4.38 4.38 Total: -1.00 -33.20 290.54 -6.20 -39.41 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -2.88 Total: 7.00 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -4.02 Total: -3.18 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.92 Total: -51.25 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.20 -6.20 -39.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.423 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds