Wall clock time and date at job start Mon Mar 30 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99733 * 2 1 4 4 H 1.48499 * 109.47218 * 269.99781 * 3 2 1 5 5 H 1.48498 * 109.47541 * 30.00197 * 3 2 1 6 6 H 1.48510 * 109.46984 * 150.00048 * 3 2 1 7 7 C 1.37868 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99937 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00143 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47349 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99572 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00008 * 180.02562 * 10 9 7 13 13 C 1.39416 * 119.99576 * 180.02562 * 12 10 9 14 14 C 1.36086 * 126.28466 * 359.97438 * 13 12 10 15 15 C 1.39807 * 107.88185 * 180.02562 * 14 13 12 16 16 N 1.30856 * 108.49584 * 359.71607 * 15 14 13 17 17 N 1.36163 * 126.27994 * 180.02562 * 13 12 10 18 18 C 1.39870 * 126.11778 * 359.97438 * 17 13 12 19 19 C 1.39340 * 120.85458 * 145.00408 * 18 17 13 20 20 C 1.37988 * 119.08009 * 180.02562 * 19 18 17 21 21 N 1.31954 * 120.83162 * 359.97438 * 20 19 18 22 22 C 1.31944 * 121.88848 * 0.02562 * 21 20 19 23 23 C 1.37996 * 120.83251 * 359.97438 * 22 21 20 24 24 H 0.97001 * 119.99670 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47223 * 60.00559 * 9 7 2 26 26 H 1.08998 * 109.47393 * 300.00287 * 9 7 2 27 27 H 0.96991 * 120.00012 * 359.97438 * 12 10 9 28 28 H 1.07995 * 126.06034 * 0.02562 * 14 13 12 29 29 H 1.07997 * 125.75548 * 180.02562 * 15 14 13 30 30 H 1.08004 * 120.46223 * 0.02562 * 19 18 17 31 31 H 1.08004 * 119.58702 * 179.97438 * 20 19 18 32 32 H 1.07998 * 119.58713 * 179.97438 * 22 21 20 33 33 H 1.07994 * 120.46132 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 8 3.2257 -3.5367 0.0010 12 7 5.3390 -2.8610 0.0020 13 6 5.8037 -4.1755 0.0013 14 6 5.0379 -5.3004 0.0002 15 6 5.8961 -6.4040 0.0005 16 7 7.1306 -5.9699 -0.0045 17 7 7.1071 -4.5693 0.0027 18 6 8.2231 -3.7261 0.0044 19 6 9.3832 -4.0776 0.6916 20 6 10.4624 -3.2180 0.6693 21 7 10.4049 -2.0774 0.0083 22 6 9.3249 -1.7094 -0.6543 23 6 8.2034 -2.5131 -0.6810 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8753 -0.6803 -0.8888 27 1 5.9693 -2.1238 0.0024 28 1 3.9584 -5.3346 -0.0007 29 1 5.5917 -7.4402 -0.0006 30 1 9.4370 -5.0098 1.2343 31 1 11.3655 -3.4820 1.1995 32 1 9.3184 -0.7673 -1.1823 33 1 7.3228 -2.2062 -1.2256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:09 Heat of formation + Delta-G solvation = 73.074044 kcal Electronic energy + Delta-G solvation = -19785.645147 eV Core-core repulsion = 16619.996809 eV Total energy + Delta-G solvation = -3165.648338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.98457 -41.03822 -40.52111 -36.24522 -35.23759 -35.05150 -32.44157 -32.12457 -31.05807 -29.95814 -25.90042 -25.05360 -24.85141 -22.83330 -22.14261 -21.06227 -19.98579 -19.07132 -17.73273 -17.62626 -17.22400 -16.82364 -16.65069 -16.33257 -15.93255 -15.66729 -15.22313 -14.86860 -14.78590 -14.68421 -14.33253 -14.12819 -13.65602 -12.94934 -12.86790 -12.48379 -12.19952 -12.04180 -11.89913 -11.69731 -11.56939 -10.87774 -10.78611 -10.67723 -10.34978 -9.83172 -9.34455 -8.26648 -6.36878 -0.40301 -0.02821 0.71522 0.82043 1.41479 1.45272 1.52154 1.55518 1.88351 1.93293 2.38186 2.65055 3.06944 3.36411 3.43677 3.64811 3.75644 3.85855 4.00830 4.19779 4.30815 4.45264 4.56565 4.60601 4.72335 4.79769 4.93527 4.95141 5.04923 5.39901 5.44766 5.59522 5.81515 6.09210 6.30603 6.51471 6.78921 6.84036 7.04044 7.27294 8.90284 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.005164 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.899132 B = 5420.933993 C = 6742.997562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.226 1.226 7 C -0.537 4.537 8 H 0.035 0.965 9 C -0.019 4.019 10 C 0.529 3.471 11 O -0.531 6.531 12 N -0.646 5.646 13 C 0.310 3.690 14 C -0.299 4.299 15 C 0.088 3.912 16 N -0.304 5.304 17 N -0.353 5.353 18 C 0.182 3.818 19 C -0.174 4.174 20 C 0.130 3.870 21 N -0.506 5.506 22 C 0.135 3.865 23 C -0.210 4.210 24 H 0.269 0.731 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.423 0.577 28 H 0.160 0.840 29 H 0.230 0.770 30 H 0.149 0.851 31 H 0.197 0.803 32 H 0.198 0.802 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.764 -3.852 0.133 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.148 1.148 7 C -0.575 4.575 8 H 0.053 0.947 9 C -0.059 4.059 10 C 0.319 3.681 11 O -0.404 6.404 12 N -0.297 5.297 13 C 0.093 3.907 14 C -0.330 4.330 15 C -0.099 4.099 16 N -0.123 5.123 17 N -0.136 5.136 18 C 0.082 3.918 19 C -0.196 4.196 20 C -0.027 4.027 21 N -0.215 5.215 22 C -0.021 4.021 23 C -0.232 4.232 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.263 0.737 28 H 0.177 0.823 29 H 0.246 0.754 30 H 0.167 0.833 31 H 0.213 0.787 32 H 0.215 0.785 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 23.970 -4.074 0.138 24.314 hybrid contribution -1.997 0.326 -0.039 2.024 sum 21.973 -3.748 0.099 22.290 Atomic orbital electron populations 1.70079 1.08811 1.28507 1.51557 1.26066 0.95715 1.03750 0.93552 0.85625 0.80006 0.77025 0.79737 1.18462 1.21495 1.14837 1.21084 0.90368 0.94050 1.52038 0.94669 1.19646 0.96226 0.88458 1.01589 1.21615 0.79561 0.93638 0.73276 1.90554 1.55733 1.47153 1.46984 1.43484 1.08773 1.04269 1.73159 1.18516 0.84586 0.87377 1.00183 1.21832 1.01900 0.90005 1.19282 1.24500 0.88602 1.01616 0.95162 1.77500 1.21976 0.84789 1.28023 1.46022 1.01497 1.05152 1.60907 1.18180 0.86599 0.90221 0.96801 1.22181 0.93076 1.03424 1.00922 1.23252 0.97968 0.87789 0.93681 1.67837 1.27685 1.17442 1.08571 1.23194 0.86089 0.99377 0.93486 1.22279 1.03128 0.95349 1.02488 0.92233 0.90283 0.90059 0.73671 0.82309 0.75380 0.83279 0.78669 0.78518 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.58 13.96 21.44 0.30 -58.28 16 2 C 0.01 0.35 5.47 84.65 0.46 0.82 16 3 Si 0.96 39.24 27.47 68.60 1.88 41.12 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.23 -7.77 6.54 99.48 0.65 -7.12 16 7 C -0.54 -30.24 9.48 25.60 0.24 -29.99 16 8 H 0.03 2.34 7.00 -2.91 -0.02 2.32 16 9 C -0.02 -0.81 4.53 29.10 0.13 -0.67 16 10 C 0.53 21.44 7.79 87.66 0.68 22.12 16 11 O -0.53 -26.07 12.59 -3.07 -0.04 -26.11 16 12 N -0.65 -20.13 5.06 -307.97 -1.56 -21.69 16 13 C 0.31 10.06 7.44 131.05 0.97 11.03 16 14 C -0.30 -10.06 9.65 22.15 0.21 -9.85 16 15 C 0.09 2.35 12.00 85.22 1.02 3.38 16 16 N -0.30 -8.65 12.36 -57.06 -0.71 -9.36 16 17 N -0.35 -10.11 3.77 -184.14 -0.69 -10.80 16 18 C 0.18 4.28 6.43 38.39 0.25 4.52 16 19 C -0.17 -3.36 9.89 22.48 0.22 -3.14 16 20 C 0.13 2.03 11.17 84.61 0.95 2.97 16 21 N -0.51 -9.03 10.36 -196.07 -2.03 -11.06 16 22 C 0.14 2.14 11.17 84.62 0.95 3.08 16 23 C -0.21 -4.01 8.54 22.48 0.19 -3.82 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.08 2.91 7.20 -2.38 -0.02 2.90 16 26 H 0.08 2.89 7.57 -2.39 -0.02 2.87 16 27 H 0.42 10.07 6.12 -92.71 -0.57 9.50 16 28 H 0.16 6.17 5.83 -2.91 -0.02 6.15 16 29 H 0.23 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.15 2.58 6.41 -2.91 -0.02 2.57 16 Total: -1.00 -76.70 290.54 3.98 -72.72 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.54 Total: 23.00 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 6.28 Total: 0.45 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.69 Total: -111.19 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.04 Total: -26.11 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.88 Total: 41.12 kcal Total: -76.70 3.98 -72.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.797 kcal (2) G-P(sol) polarization free energy of solvation -76.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds