Wall clock time and date at job start Mon Mar 30 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37855 * 119.99685 * 2 1 4 4 N 1.32591 * 120.89139 * 0.25932 * 3 2 1 5 5 C 1.32348 * 121.50418 * 180.25805 * 4 3 2 6 6 N 1.31163 * 122.95584 * 359.46740 * 5 4 3 7 7 C 1.34180 * 120.48981 * 0.25811 * 6 5 4 8 8 C 1.40057 * 121.82961 * 180.02562 * 7 6 5 9 9 C 1.38676 * 119.35750 * 179.97438 * 8 7 6 10 10 C 1.47837 * 119.72974 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00107 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00316 * 179.97438 * 10 9 8 13 13 C 1.36797 * 120.00215 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99868 * 0.02562 * 13 12 10 15 15 C 1.39103 * 120.00045 * 180.02562 * 13 12 10 16 16 N 1.31329 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00053 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46795 * 90.00073 * 17 15 13 19 19 H 1.48501 * 109.47260 * 209.99758 * 17 15 13 20 20 H 1.48495 * 109.47025 * 330.00258 * 17 15 13 21 21 C 1.40468 * 120.54051 * 0.04917 * 9 8 7 22 22 C 1.36072 * 120.76001 * 359.95465 * 21 9 8 23 23 C 1.40042 * 119.87795 * 0.02562 * 22 21 9 24 24 H 1.09005 * 109.46787 * 299.99484 * 1 2 3 25 25 H 1.08997 * 109.47627 * 59.99780 * 1 2 3 26 26 H 1.09000 * 109.46283 * 179.97438 * 1 2 3 27 27 H 0.96993 * 120.00528 * 180.02562 * 2 1 3 28 28 H 1.08002 * 118.52537 * 179.75577 * 5 4 3 29 29 H 1.07992 * 120.31991 * 359.96724 * 8 7 6 30 30 H 0.97003 * 119.99134 * 0.02562 * 12 10 9 31 31 H 0.96996 * 119.99835 * 179.97438 * 16 15 13 32 32 H 1.08003 * 119.62049 * 179.97438 * 21 9 8 33 33 H 1.08005 * 120.06127 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1542 1.1939 0.0000 4 7 1.5092 2.3523 0.0051 5 6 2.1585 3.5055 0.0001 6 7 3.4676 3.5873 0.0001 7 6 4.2191 2.4757 0.0001 8 6 5.6187 2.5303 0.0005 9 6 6.3451 1.3490 0.0010 10 6 7.8227 1.3970 0.0021 11 8 8.3961 2.4692 0.0030 12 7 8.5342 0.2523 0.0031 13 6 9.9015 0.2968 0.0046 14 1 10.4108 1.2491 0.0055 15 6 10.6358 -0.8846 0.0051 16 7 10.0164 -2.0427 0.0036 17 14 12.5027 -0.8239 0.0065 18 1 12.9964 -0.8079 1.4070 19 1 13.0374 -2.0197 -0.6932 20 1 12.9586 0.4040 -0.6931 21 6 5.6885 0.1072 0.0000 22 6 4.3295 0.0386 -0.0006 23 6 3.5715 1.2162 -0.0007 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.9501 -0.8399 -0.0004 28 1 1.5847 4.4205 0.0007 29 1 6.1271 3.4830 0.0004 30 1 8.0767 -0.6030 0.0027 31 1 10.5284 -2.8665 0.0036 32 1 6.2690 -0.8035 0.0000 33 1 3.8363 -0.9223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143316175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:47 Heat of formation + Delta-G solvation = 33.636309 kcal Electronic energy + Delta-G solvation = -19528.552767 eV Core-core repulsion = 16361.194281 eV Total energy + Delta-G solvation = -3167.358486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09894 -38.70995 -36.80908 -36.51974 -34.22214 -32.59206 -31.67875 -30.95242 -29.80074 -26.92842 -25.50136 -24.25097 -23.64595 -21.51177 -20.43518 -18.65658 -18.26188 -17.78949 -17.03060 -16.19346 -15.25797 -15.11983 -15.03232 -14.66777 -14.08484 -13.95275 -13.94142 -13.49762 -13.45884 -13.10017 -12.61436 -12.35294 -11.80544 -11.74759 -11.52276 -11.38475 -11.21358 -10.57516 -10.46632 -10.34634 -9.74044 -9.36661 -9.02262 -8.74638 -8.60399 -8.20264 -7.71554 -6.69201 -3.98390 0.54895 0.86952 2.13627 2.85808 2.89891 3.14642 3.16212 3.22196 3.98443 4.04598 4.29975 4.37789 4.46757 4.64281 4.75586 4.82008 4.97890 5.17650 5.29057 5.31573 5.42128 5.54128 5.60678 5.78081 5.95787 6.25140 6.35136 6.43948 6.66486 6.72694 6.88947 7.05384 7.31331 7.53353 7.83939 8.37897 8.45994 8.94099 9.28322 9.85718 10.47160 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034873 B = 0.004002 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.714659 B = 6995.448429 C = 7783.017363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.707 5.707 3 C 0.469 3.531 4 N -0.604 5.604 5 C 0.336 3.664 6 N -0.548 5.548 7 C 0.182 3.818 8 C -0.071 4.071 9 C -0.050 4.050 10 C 0.456 3.544 11 O -0.591 6.591 12 N -0.535 5.535 13 C -0.291 4.291 14 H 0.111 0.889 15 C 0.025 3.975 16 N -0.884 5.884 17 Si 0.937 3.063 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.111 4.111 22 C -0.081 4.081 23 C -0.196 4.196 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.413 0.587 28 H 0.190 0.810 29 H 0.149 0.851 30 H 0.394 0.606 31 H 0.278 0.722 32 H 0.135 0.865 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.675 -1.473 -0.031 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.340 5.340 3 C 0.214 3.786 4 N -0.332 5.332 5 C 0.045 3.955 6 N -0.266 5.266 7 C 0.058 3.942 8 C -0.093 4.093 9 C -0.057 4.057 10 C 0.245 3.755 11 O -0.478 6.478 12 N -0.169 5.169 13 C -0.421 4.421 14 H 0.129 0.871 15 C -0.180 4.180 16 N -0.523 5.523 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.204 4.204 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.250 0.750 28 H 0.207 0.793 29 H 0.167 0.833 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.774 -0.075 -0.029 16.774 hybrid contribution 1.134 -1.791 0.009 2.120 sum -15.639 -1.866 -0.020 15.750 Atomic orbital electron populations 1.21553 0.78517 1.01912 1.02605 1.44192 1.07182 1.04703 1.77910 1.18631 0.87031 0.87298 0.85644 1.67854 1.41026 0.97466 1.26885 1.24438 0.87852 0.94270 0.88967 1.68769 1.07081 1.30513 1.20283 1.18609 0.94086 0.87196 0.94305 1.20998 0.89996 0.99352 0.98932 1.20431 0.95338 0.92906 0.97056 1.17662 0.85446 0.85195 0.87224 1.90625 1.70833 1.28880 1.57452 1.41924 1.07231 1.07114 1.60653 1.19924 0.80902 0.95092 1.46196 0.87132 1.25440 1.01595 0.94420 0.96520 1.69565 1.37456 0.97851 1.47460 0.85737 0.80998 0.78250 0.78733 1.20015 1.20616 1.18997 1.21113 0.94327 0.97837 0.99726 1.20463 0.93947 0.96138 0.99656 1.18980 0.92817 0.96362 1.12244 0.92043 0.92059 0.90838 0.75030 0.79342 0.83312 0.77077 0.91215 0.84761 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 10.76 59.85 0.64 1.35 16 2 N -0.71 -6.73 5.78 -66.72 -0.39 -7.12 16 3 C 0.47 6.32 7.55 -154.96 -1.17 5.15 16 4 N -0.60 -8.41 9.67 -13.52 -0.13 -8.54 16 5 C 0.34 4.72 12.22 -92.21 -1.13 3.59 16 6 N -0.55 -9.27 10.44 -12.67 -0.13 -9.40 16 7 C 0.18 3.24 6.61 -84.87 -0.56 2.68 16 8 C -0.07 -1.39 9.59 -38.74 -0.37 -1.76 16 9 C -0.05 -1.01 5.87 -104.97 -0.62 -1.63 16 10 C 0.46 11.17 7.72 -12.33 -0.10 11.08 16 11 O -0.59 -16.49 15.88 5.29 0.08 -16.41 16 12 N -0.54 -13.34 5.22 -11.84 -0.06 -13.40 16 13 C -0.29 -7.83 9.68 -15.02 -0.15 -7.97 16 14 H 0.11 3.11 7.15 -52.49 -0.38 2.73 16 15 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 16 N -0.88 -22.54 13.05 55.50 0.72 -21.81 16 17 Si 0.94 19.91 29.55 -169.99 -5.02 14.88 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.11 -1.83 9.45 -39.52 -0.37 -2.20 16 22 C -0.08 -1.13 9.51 -39.68 -0.38 -1.50 16 23 C -0.20 -3.01 5.76 -106.59 -0.61 -3.62 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.41 3.02 7.06 -40.82 -0.29 2.73 16 28 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.15 3.04 7.62 -52.49 -0.40 2.64 16 30 H 0.39 9.13 5.88 -40.82 -0.24 8.89 16 31 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.13 2.09 6.34 -52.48 -0.33 1.76 16 33 H 0.12 1.21 6.55 -52.48 -0.34 0.87 16 LS Contribution 292.50 15.07 4.41 4.41 Total: -1.00 -32.10 292.50 -8.23 -40.32 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -2.81 Total: 11.38 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -4.90 Total: 5.68 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.01 Total: -60.27 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.08 Total: -16.41 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.10 -8.23 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143316175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.960 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds