Wall clock time and date at job start Mon Mar 30 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37855 * 119.99685 * 2 1 4 4 N 1.32591 * 120.89139 * 0.25932 * 3 2 1 5 5 C 1.32348 * 121.50418 * 180.25805 * 4 3 2 6 6 N 1.31163 * 122.95584 * 359.46740 * 5 4 3 7 7 C 1.34180 * 120.48981 * 0.25811 * 6 5 4 8 8 C 1.40057 * 121.82961 * 180.02562 * 7 6 5 9 9 C 1.38676 * 119.35750 * 179.97438 * 8 7 6 10 10 C 1.47837 * 119.72974 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00107 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00316 * 179.97438 * 10 9 8 13 13 C 1.36797 * 120.00215 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99868 * 0.02562 * 13 12 10 15 15 C 1.39103 * 120.00045 * 180.02562 * 13 12 10 16 16 N 1.31329 * 119.99739 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00053 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46795 * 90.00073 * 17 15 13 19 19 H 1.48501 * 109.47260 * 209.99758 * 17 15 13 20 20 H 1.48495 * 109.47025 * 330.00258 * 17 15 13 21 21 C 1.40468 * 120.54051 * 0.04917 * 9 8 7 22 22 C 1.36072 * 120.76001 * 359.95465 * 21 9 8 23 23 C 1.40042 * 119.87795 * 0.02562 * 22 21 9 24 24 H 1.09005 * 109.46787 * 299.99484 * 1 2 3 25 25 H 1.08997 * 109.47627 * 59.99780 * 1 2 3 26 26 H 1.09000 * 109.46283 * 179.97438 * 1 2 3 27 27 H 0.96993 * 120.00528 * 180.02562 * 2 1 3 28 28 H 1.08002 * 118.52537 * 179.75577 * 5 4 3 29 29 H 1.07992 * 120.31991 * 359.96724 * 8 7 6 30 30 H 0.97003 * 119.99134 * 0.02562 * 12 10 9 31 31 H 0.96996 * 119.99835 * 179.97438 * 16 15 13 32 32 H 1.08003 * 119.62049 * 179.97438 * 21 9 8 33 33 H 1.08005 * 120.06127 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1542 1.1939 0.0000 4 7 1.5092 2.3523 0.0051 5 6 2.1585 3.5055 0.0001 6 7 3.4676 3.5873 0.0001 7 6 4.2191 2.4757 0.0001 8 6 5.6187 2.5303 0.0005 9 6 6.3451 1.3490 0.0010 10 6 7.8227 1.3970 0.0021 11 8 8.3961 2.4692 0.0030 12 7 8.5342 0.2523 0.0031 13 6 9.9015 0.2968 0.0046 14 1 10.4108 1.2491 0.0055 15 6 10.6358 -0.8846 0.0051 16 7 10.0164 -2.0427 0.0036 17 14 12.5027 -0.8239 0.0065 18 1 12.9964 -0.8079 1.4070 19 1 13.0374 -2.0197 -0.6932 20 1 12.9586 0.4040 -0.6931 21 6 5.6885 0.1072 0.0000 22 6 4.3295 0.0386 -0.0006 23 6 3.5715 1.2162 -0.0007 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.9501 -0.8399 -0.0004 28 1 1.5847 4.4205 0.0007 29 1 6.1271 3.4830 0.0004 30 1 8.0767 -0.6030 0.0027 31 1 10.5284 -2.8665 0.0036 32 1 6.2690 -0.8035 0.0000 33 1 3.8363 -0.9223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143316175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:47 Heat of formation + Delta-G solvation = 11.522988 kcal Electronic energy + Delta-G solvation = -19529.511673 eV Core-core repulsion = 16361.194281 eV Total energy + Delta-G solvation = -3168.317392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30562 -40.46014 -38.15928 -37.60034 -36.19764 -33.79321 -33.41749 -32.39182 -31.05480 -28.10735 -26.99710 -25.45500 -25.05985 -22.72775 -22.03506 -20.36855 -19.71822 -19.04505 -18.27335 -17.73643 -16.83133 -16.37897 -16.33455 -15.89419 -15.66037 -15.55870 -15.20048 -14.74434 -14.68267 -14.64074 -13.94875 -13.59221 -13.17028 -13.07086 -12.91573 -12.88581 -12.49717 -12.41787 -12.12847 -11.64012 -11.62383 -10.63938 -10.48498 -10.19731 -10.15624 -10.05233 -8.84565 -8.61201 -6.03844 -0.74481 -0.37603 0.88148 1.34484 1.41952 1.54520 1.63631 1.98440 2.23763 2.41365 2.86045 3.05915 3.22771 3.26157 3.38365 3.50788 3.68365 4.01056 4.09091 4.22891 4.37690 4.49977 4.68195 4.73004 4.86743 5.02450 5.06604 5.23265 5.29561 5.31412 5.53907 5.80154 5.87449 6.00548 6.44163 6.58451 6.96984 7.33680 7.35370 7.93395 8.55507 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034873 B = 0.004002 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.714659 B = 6995.448429 C = 7783.017363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.685 5.685 3 C 0.472 3.528 4 N -0.606 5.606 5 C 0.345 3.655 6 N -0.584 5.584 7 C 0.168 3.832 8 C -0.086 4.086 9 C -0.064 4.064 10 C 0.452 3.548 11 O -0.636 6.636 12 N -0.538 5.538 13 C -0.339 4.339 14 H 0.084 0.916 15 C -0.003 4.003 16 N -0.901 5.901 17 Si 0.999 3.001 18 H -0.268 1.268 19 H -0.265 1.265 20 H -0.273 1.273 21 C -0.123 4.123 22 C -0.049 4.049 23 C -0.200 4.200 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.426 0.574 28 H 0.225 0.775 29 H 0.123 0.877 30 H 0.401 0.599 31 H 0.286 0.714 32 H 0.143 0.857 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.589 -3.718 -0.018 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.317 5.317 3 C 0.215 3.785 4 N -0.336 5.336 5 C 0.055 3.945 6 N -0.304 5.304 7 C 0.045 3.955 8 C -0.108 4.108 9 C -0.071 4.071 10 C 0.242 3.758 11 O -0.526 6.526 12 N -0.173 5.173 13 C -0.469 4.469 14 H 0.102 0.898 15 C -0.206 4.206 16 N -0.540 5.540 17 Si 0.821 3.179 18 H -0.193 1.193 19 H -0.189 1.189 20 H -0.197 1.197 21 C -0.142 4.142 22 C -0.069 4.069 23 C -0.209 4.209 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.266 0.734 28 H 0.241 0.759 29 H 0.141 0.859 30 H 0.238 0.762 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.743 -2.398 -0.015 19.888 hybrid contribution 1.647 -1.056 0.006 1.956 sum -18.096 -3.454 -0.010 18.422 Atomic orbital electron populations 1.21800 0.76563 1.04369 1.02294 1.44401 1.08411 1.03825 1.75094 1.18791 0.86391 0.88587 0.84769 1.68006 1.40555 0.97568 1.27447 1.25179 0.87157 0.95745 0.86420 1.68786 1.08393 1.30566 1.22702 1.18599 0.93310 0.88922 0.94657 1.20842 0.91365 0.98198 1.00389 1.20112 0.92547 0.94920 0.99484 1.18405 0.87463 0.84377 0.85562 1.90568 1.72532 1.30502 1.58996 1.41845 1.06799 1.07441 1.61182 1.19836 0.82057 0.94862 1.50100 0.89796 1.26177 1.05586 0.93638 0.95155 1.69597 1.38967 0.98223 1.47202 0.84847 0.75759 0.78321 0.78967 1.19279 1.18887 1.19724 1.21119 0.95633 0.96325 1.01163 1.20914 0.92610 0.97802 0.95567 1.19186 0.94149 0.95800 1.11752 0.92320 0.92324 0.87119 0.73426 0.75930 0.85894 0.76247 0.90442 0.83901 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.76 127.77 1.37 2.25 16 2 N -0.69 -9.60 5.78 -365.01 -2.11 -11.71 16 3 C 0.47 11.00 7.55 134.05 1.01 12.01 16 4 N -0.61 -14.99 9.67 -196.69 -1.90 -16.89 16 5 C 0.35 8.99 12.22 180.91 2.21 11.20 16 6 N -0.58 -19.58 10.44 -193.99 -2.03 -21.61 16 7 C 0.17 5.99 6.61 40.06 0.26 6.25 16 8 C -0.09 -3.56 9.59 22.82 0.22 -3.34 16 9 C -0.06 -2.69 5.87 -20.09 -0.12 -2.81 16 10 C 0.45 23.58 7.72 86.78 0.67 24.25 16 11 O -0.64 -38.28 15.88 -3.99 -0.06 -38.35 16 12 N -0.54 -28.15 5.22 -309.63 -1.62 -29.77 16 13 C -0.34 -19.15 9.68 84.13 0.81 -18.33 16 14 H 0.08 5.07 7.15 -2.91 -0.02 5.05 16 15 C 0.00 -0.15 5.50 84.98 0.47 0.32 16 16 N -0.90 -45.99 13.05 21.69 0.28 -45.70 16 17 Si 1.00 41.20 29.55 68.60 2.03 43.23 16 18 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C -0.12 -3.96 9.45 22.31 0.21 -3.75 16 22 C -0.05 -1.20 9.51 22.20 0.21 -0.99 16 23 C -0.20 -5.68 5.76 -21.14 -0.12 -5.80 16 24 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.43 3.67 7.06 -92.71 -0.65 3.02 16 28 H 0.22 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.12 5.55 7.62 -2.91 -0.02 5.53 16 30 H 0.40 19.20 5.88 -92.71 -0.54 18.66 16 31 H 0.29 13.43 8.31 -92.71 -0.77 12.66 16 32 H 0.14 4.32 6.34 -2.91 -0.02 4.30 16 33 H 0.18 2.41 6.55 -2.91 -0.02 2.39 16 Total: -1.00 -74.44 292.50 1.80 -72.65 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.01 Total: 26.88 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 7.21 Total: 21.27 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -7.37 Total: -125.68 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.06 Total: -38.35 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -74.44 1.80 -72.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143316175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.169 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds