Wall clock time and date at job start Mon Mar 30 2020 01:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30853 * 125.89401 * 2 1 4 4 C 1.33652 * 109.77732 * 179.97438 * 3 2 1 5 5 N 1.39734 * 125.61030 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00674 * 180.02562 * 5 4 3 7 7 O 1.21623 * 119.99378 * 359.97438 * 6 5 4 8 8 C 1.47372 * 120.00424 * 180.02562 * 6 5 4 9 9 C 1.39257 * 120.28440 * 355.07661 * 8 6 5 10 10 C 1.38202 * 120.08996 * 180.02562 * 9 8 6 11 11 C 1.38841 * 120.68097 * 0.02653 * 10 9 8 12 12 C 1.37582 * 120.57799 * 359.97438 * 11 10 9 13 13 C 1.40716 * 119.87758 * 359.68253 * 12 11 10 14 14 C 1.40875 * 120.32811 * 180.31220 * 13 12 11 15 15 H 1.08006 * 119.99654 * 141.56883 * 14 13 12 16 16 C 1.40272 * 120.00520 * 321.57678 * 14 13 12 17 17 N 1.30625 * 120.00480 * 174.30244 * 16 14 13 18 18 Si 1.86802 * 119.99733 * 354.30001 * 16 14 13 19 19 H 1.48501 * 109.46906 * 89.40475 * 18 16 14 20 20 H 1.48503 * 109.47131 * 209.40738 * 18 16 14 21 21 H 1.48500 * 109.47209 * 329.41026 * 18 16 14 22 22 N 1.31206 * 108.78664 * 0.02562 * 4 3 2 23 23 N 1.34379 * 125.89037 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.77544 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47341 * 89.97205 * 1 2 3 26 26 H 1.09001 * 109.47396 * 209.98129 * 1 2 3 27 27 H 1.09004 * 109.47321 * 329.97781 * 1 2 3 28 28 H 0.97006 * 119.99316 * 359.97438 * 5 4 3 29 29 H 1.07994 * 119.95845 * 0.02712 * 9 8 6 30 30 H 1.08001 * 119.66031 * 179.97438 * 10 9 8 31 31 H 1.08005 * 119.71196 * 179.97438 * 11 10 9 32 32 H 1.07998 * 120.06507 * 179.97438 * 12 11 10 33 33 H 0.96999 * 120.00236 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 6 3.5582 0.6890 0.0006 5 7 4.6552 1.5546 0.0002 6 6 5.9073 1.0558 0.0003 7 8 6.0823 -0.1478 0.0012 8 6 7.0642 1.9687 0.0006 9 6 6.8734 3.3442 -0.1026 10 6 7.9613 4.1966 -0.1025 11 6 9.2527 3.6971 -0.0008 12 6 9.4732 2.3430 0.1024 13 6 8.3826 1.4539 0.1120 14 6 8.5971 0.0660 0.2239 15 1 7.9268 -0.5378 0.8177 16 6 9.6813 -0.5316 -0.4356 17 7 9.9462 -1.7962 -0.2435 18 14 10.7464 0.4811 -1.5887 19 1 11.8576 1.0991 -0.8215 20 1 11.3046 -0.3982 -2.6472 21 1 9.9236 1.5476 -2.2140 22 7 3.6193 -0.6216 0.0004 23 7 2.2948 -1.0887 -0.0005 24 1 2.0058 -2.0146 -0.0006 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 4.5155 2.5145 -0.0008 29 1 5.8740 3.7455 -0.1827 30 1 7.8053 5.2622 -0.1832 31 1 10.0915 4.3774 -0.0027 32 1 10.4812 1.9634 0.1807 33 1 10.6957 -2.2095 -0.6999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143727152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:29 Heat of formation + Delta-G solvation = 85.954297 kcal Electronic energy + Delta-G solvation = -19952.542456 eV Core-core repulsion = 16787.452648 eV Total energy + Delta-G solvation = -3165.089808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89799 -39.13726 -37.11710 -34.49729 -33.58378 -32.23831 -31.76957 -30.51944 -29.94797 -27.74785 -25.54187 -23.44676 -21.94500 -21.13252 -20.41410 -19.36543 -18.17883 -17.47936 -16.49453 -15.96270 -15.75817 -15.30740 -14.28701 -14.14253 -14.02266 -13.96285 -13.54213 -13.00063 -12.97338 -12.72433 -12.56859 -12.05369 -11.63762 -11.57471 -10.97686 -10.78230 -10.71303 -10.48705 -10.15078 -9.83139 -9.78587 -9.60897 -9.29696 -8.64975 -8.28701 -7.87397 -7.63825 -6.91211 -4.51450 1.79909 2.02928 2.56334 2.70655 3.06633 3.08598 3.19400 3.27560 3.31432 3.94196 4.04308 4.40388 4.57878 4.77712 5.20164 5.28206 5.32403 5.52746 5.72779 5.74976 5.95410 6.01591 6.29448 6.44437 6.48398 6.73811 7.02528 7.10858 7.19606 7.21424 7.32856 7.51112 7.63494 7.84926 7.96002 8.43153 8.51220 8.58790 8.78259 9.15839 10.06827 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.005464 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.959690 B = 5123.267833 C = 6106.855423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.287 3.713 3 N -0.562 5.562 4 C 0.453 3.547 5 N -0.637 5.637 6 C 0.554 3.446 7 O -0.473 6.473 8 C -0.245 4.245 9 C -0.041 4.041 10 C -0.249 4.249 11 C -0.064 4.064 12 C -0.222 4.222 13 C 0.119 3.881 14 C -0.395 4.395 15 H 0.115 0.885 16 C 0.079 3.921 17 N -0.792 5.792 18 Si 0.909 3.091 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.242 1.242 22 N -0.287 5.287 23 N -0.488 5.488 24 H 0.438 0.562 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.415 0.585 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.950 4.546 -0.796 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.297 5.297 4 C 0.083 3.917 5 N -0.293 5.293 6 C 0.347 3.653 7 O -0.342 6.342 8 C -0.251 4.251 9 C -0.060 4.060 10 C -0.268 4.268 11 C -0.083 4.083 12 C -0.241 4.241 13 C 0.114 3.886 14 C -0.422 4.422 15 H 0.133 0.867 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.216 1.216 21 H -0.165 1.165 22 N -0.124 5.124 23 N -0.208 5.208 24 H 0.283 0.717 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.253 0.747 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.975 3.385 -0.815 12.471 hybrid contribution 0.111 0.281 -0.506 0.590 sum -11.864 3.667 -1.321 12.488 Atomic orbital electron populations 1.20350 0.83850 1.04774 1.04340 1.24099 0.96228 0.82830 0.96068 1.70124 1.00146 1.29950 1.29450 1.20597 0.86607 0.87575 0.96893 1.43174 1.02192 1.08729 1.75238 1.18647 0.80929 0.89130 0.76644 1.90885 1.83221 1.14892 1.45202 1.19180 0.92259 0.91684 1.21927 1.20821 0.97090 0.92562 0.95518 1.20309 0.92558 0.97714 1.16225 1.20770 0.96056 0.94867 0.96578 1.21185 0.98089 0.93219 1.11596 1.17504 0.89457 0.93734 0.87901 1.19983 1.07342 0.92065 1.22770 0.86718 1.26320 0.95865 0.95320 0.96661 1.69544 1.24943 1.12244 1.34826 0.86377 0.80070 0.80234 0.79804 1.19319 1.21618 1.16493 1.79000 0.93379 1.09365 1.30638 1.48064 1.04518 1.09652 1.58549 0.71653 0.89176 0.89940 0.88566 0.74734 0.88422 0.88223 0.88343 0.87511 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.29 3.71 8.23 -155.72 -1.28 2.43 16 3 N -0.56 -9.41 11.21 -11.09 -0.12 -9.53 16 4 C 0.45 9.07 8.82 -320.98 -2.83 6.23 16 5 N -0.64 -12.75 5.38 -13.83 -0.07 -12.82 16 6 C 0.55 13.29 7.69 -12.54 -0.10 13.19 16 7 O -0.47 -13.18 12.36 5.26 0.06 -13.11 16 8 C -0.25 -5.80 5.92 -104.37 -0.62 -6.42 16 9 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 10 C -0.25 -4.79 10.03 -39.37 -0.39 -5.19 16 11 C -0.06 -1.31 10.01 -39.60 -0.40 -1.70 16 12 C -0.22 -5.18 6.94 -38.89 -0.27 -5.45 16 13 C 0.12 3.06 5.04 -106.54 -0.54 2.52 16 14 C -0.39 -11.14 8.08 -37.82 -0.31 -11.45 16 15 H 0.12 3.60 6.37 -52.48 -0.33 3.27 16 16 C 0.08 2.12 5.50 -17.30 -0.10 2.02 16 17 N -0.79 -21.79 13.92 55.56 0.77 -21.01 16 18 Si 0.91 20.81 24.48 -169.99 -4.16 16.64 16 19 H -0.27 -5.76 6.70 56.52 0.38 -5.38 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.24 -5.65 6.67 56.52 0.38 -5.27 16 22 N -0.29 -5.96 10.97 30.02 0.33 -5.63 16 23 N -0.49 -6.97 7.44 32.62 0.24 -6.72 16 24 H 0.44 4.41 8.96 -182.33 -1.63 2.77 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.41 6.91 6.88 -40.82 -0.28 6.63 16 29 H 0.10 1.57 6.42 -52.49 -0.34 1.23 16 30 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.11 2.44 4.88 -52.49 -0.26 2.19 16 33 H 0.29 7.09 8.29 -40.82 -0.34 6.75 16 LS Contribution 284.88 15.07 4.29 4.29 Total: -1.00 -34.62 284.88 -9.62 -44.24 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.14 Total: 8.76 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -6.82 Total: -5.09 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 1.15 Total: -55.73 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.06 Total: -13.11 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.16 Total: 16.64 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.62 -9.62 -44.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143727152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.192 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds