Wall clock time and date at job start Mon Mar 30 2020 01:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30853 * 125.89401 * 2 1 4 4 C 1.33652 * 109.77732 * 179.97438 * 3 2 1 5 5 N 1.39734 * 125.61030 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00674 * 180.02562 * 5 4 3 7 7 O 1.21623 * 119.99378 * 359.97438 * 6 5 4 8 8 C 1.47372 * 120.00424 * 180.02562 * 6 5 4 9 9 C 1.39257 * 120.28440 * 355.07661 * 8 6 5 10 10 C 1.38202 * 120.08996 * 180.02562 * 9 8 6 11 11 C 1.38841 * 120.68097 * 0.02653 * 10 9 8 12 12 C 1.37582 * 120.57799 * 359.97438 * 11 10 9 13 13 C 1.40716 * 119.87758 * 359.68253 * 12 11 10 14 14 C 1.40875 * 120.32811 * 180.31220 * 13 12 11 15 15 H 1.08006 * 119.99654 * 141.56883 * 14 13 12 16 16 C 1.40272 * 120.00520 * 321.57678 * 14 13 12 17 17 N 1.30625 * 120.00480 * 174.30244 * 16 14 13 18 18 Si 1.86802 * 119.99733 * 354.30001 * 16 14 13 19 19 H 1.48501 * 109.46906 * 89.40475 * 18 16 14 20 20 H 1.48503 * 109.47131 * 209.40738 * 18 16 14 21 21 H 1.48500 * 109.47209 * 329.41026 * 18 16 14 22 22 N 1.31206 * 108.78664 * 0.02562 * 4 3 2 23 23 N 1.34379 * 125.89037 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.77544 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47341 * 89.97205 * 1 2 3 26 26 H 1.09001 * 109.47396 * 209.98129 * 1 2 3 27 27 H 1.09004 * 109.47321 * 329.97781 * 1 2 3 28 28 H 0.97006 * 119.99316 * 359.97438 * 5 4 3 29 29 H 1.07994 * 119.95845 * 0.02712 * 9 8 6 30 30 H 1.08001 * 119.66031 * 179.97438 * 10 9 8 31 31 H 1.08005 * 119.71196 * 179.97438 * 11 10 9 32 32 H 1.07998 * 120.06507 * 179.97438 * 12 11 10 33 33 H 0.96999 * 120.00236 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 6 3.5582 0.6890 0.0006 5 7 4.6552 1.5546 0.0002 6 6 5.9073 1.0558 0.0003 7 8 6.0823 -0.1478 0.0012 8 6 7.0642 1.9687 0.0006 9 6 6.8734 3.3442 -0.1026 10 6 7.9613 4.1966 -0.1025 11 6 9.2527 3.6971 -0.0008 12 6 9.4732 2.3430 0.1024 13 6 8.3826 1.4539 0.1120 14 6 8.5971 0.0660 0.2239 15 1 7.9268 -0.5378 0.8177 16 6 9.6813 -0.5316 -0.4356 17 7 9.9462 -1.7962 -0.2435 18 14 10.7464 0.4811 -1.5887 19 1 11.8576 1.0991 -0.8215 20 1 11.3046 -0.3982 -2.6472 21 1 9.9236 1.5476 -2.2140 22 7 3.6193 -0.6216 0.0004 23 7 2.2948 -1.0887 -0.0005 24 1 2.0058 -2.0146 -0.0006 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3634 0.8898 0.5142 28 1 4.5155 2.5145 -0.0008 29 1 5.8740 3.7455 -0.1827 30 1 7.8053 5.2622 -0.1832 31 1 10.0915 4.3774 -0.0027 32 1 10.4812 1.9634 0.1807 33 1 10.6957 -2.2095 -0.6999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143727152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:28 Heat of formation + Delta-G solvation = 61.668936 kcal Electronic energy + Delta-G solvation = -19953.595548 eV Core-core repulsion = 16787.452648 eV Total energy + Delta-G solvation = -3166.142900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.19468 -40.92065 -38.87266 -36.19780 -35.42380 -33.37860 -33.16184 -32.34259 -31.54259 -28.77254 -27.38207 -25.13258 -23.57876 -22.57776 -21.89390 -21.01183 -19.70664 -19.19553 -18.06923 -17.52505 -17.12012 -17.03182 -16.00583 -15.80790 -15.68256 -15.39039 -14.92724 -14.57309 -14.35614 -13.93610 -13.69075 -13.61445 -13.31962 -12.73699 -12.70174 -12.58498 -12.22741 -12.20535 -11.98753 -11.62480 -11.15480 -11.09915 -10.90120 -10.53130 -9.86135 -9.55379 -9.44401 -8.83428 -6.52139 0.19703 0.67417 0.81692 1.23539 1.36385 1.38137 1.46378 1.66369 2.07942 2.10485 2.34046 2.69858 3.38603 3.47213 3.67456 4.13119 4.20170 4.40639 4.52210 4.69768 4.72131 4.75749 4.80709 4.96705 5.12336 5.19178 5.27670 5.39035 5.59638 5.65831 5.80906 5.90275 6.11283 6.22811 6.37658 6.43400 6.69556 6.75104 7.14867 7.39409 8.22560 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.005464 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.959690 B = 5123.267833 C = 6106.855423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.306 3.694 3 N -0.578 5.578 4 C 0.433 3.567 5 N -0.623 5.623 6 C 0.551 3.449 7 O -0.523 6.523 8 C -0.261 4.261 9 C -0.040 4.040 10 C -0.222 4.222 11 C -0.056 4.056 12 C -0.242 4.242 13 C 0.104 3.896 14 C -0.443 4.443 15 H 0.058 0.942 16 C 0.034 3.966 17 N -0.852 5.852 18 Si 0.971 3.029 19 H -0.242 1.242 20 H -0.282 1.282 21 H -0.247 1.247 22 N -0.351 5.351 23 N -0.479 5.479 24 H 0.455 0.545 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.430 0.570 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.107 0.893 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 8.733 -1.651 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 N -0.313 5.313 4 C 0.063 3.937 5 N -0.280 5.280 6 C 0.343 3.657 7 O -0.396 6.396 8 C -0.266 4.266 9 C -0.058 4.058 10 C -0.240 4.240 11 C -0.075 4.075 12 C -0.261 4.261 13 C 0.100 3.900 14 C -0.472 4.472 15 H 0.076 0.924 16 C -0.180 4.180 17 N -0.479 5.479 18 Si 0.793 3.207 19 H -0.166 1.166 20 H -0.209 1.209 21 H -0.171 1.171 22 N -0.188 5.188 23 N -0.201 5.201 24 H 0.304 0.696 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.271 0.729 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.125 0.875 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.786 7.595 -1.653 15.827 hybrid contribution 0.282 -0.766 -0.178 0.835 sum -13.504 6.829 -1.831 15.243 Atomic orbital electron populations 1.20726 0.78722 1.06964 1.06465 1.25347 0.98362 0.81215 0.92275 1.70171 0.98732 1.31468 1.30978 1.20751 0.87618 0.87527 0.97778 1.42736 1.01399 1.09520 1.74332 1.18885 0.82302 0.88608 0.75893 1.90879 1.84287 1.17073 1.47311 1.19519 0.91526 0.93714 1.21879 1.21272 0.99954 0.90624 0.93989 1.20994 0.91495 1.00093 1.11447 1.21321 0.98323 0.93938 0.93885 1.21297 0.97371 0.94521 1.12886 1.17754 0.91421 0.93099 0.87678 1.19713 1.08275 0.93267 1.25995 0.92401 1.27113 0.96836 0.96273 0.97749 1.69613 1.26813 1.13911 1.37586 0.85463 0.78797 0.78540 0.77937 1.16623 1.20924 1.17053 1.78846 0.97407 1.10508 1.32068 1.47896 1.02746 1.11090 1.58337 0.69637 0.86789 0.86645 0.87423 0.72914 0.84161 0.83214 0.83962 0.87507 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.31 7.33 8.23 138.24 1.14 8.47 16 3 N -0.58 -18.71 11.21 -189.00 -2.12 -20.83 16 4 C 0.43 17.62 8.82 260.85 2.30 19.92 16 5 N -0.62 -25.19 5.38 -315.91 -1.70 -26.89 16 6 C 0.55 27.56 7.69 86.65 0.67 28.23 16 7 O -0.52 -31.63 12.36 -4.11 -0.05 -31.68 16 8 C -0.26 -12.40 5.92 -19.70 -0.12 -12.52 16 9 C -0.04 -1.44 9.52 22.51 0.21 -1.22 16 10 C -0.22 -7.19 10.03 22.41 0.22 -6.96 16 11 C -0.06 -2.02 10.01 22.26 0.22 -1.80 16 12 C -0.24 -10.93 6.94 22.72 0.16 -10.77 16 13 C 0.10 5.52 5.04 -21.10 -0.11 5.42 16 14 C -0.44 -27.17 8.08 23.41 0.19 -26.98 16 15 H 0.06 4.09 6.37 -2.91 -0.02 4.07 16 16 C 0.03 1.94 5.50 85.37 0.47 2.41 16 17 N -0.85 -50.99 13.92 21.88 0.30 -50.68 16 18 Si 0.97 44.10 24.48 68.60 1.68 45.78 16 19 H -0.24 -9.83 6.70 99.48 0.67 -9.17 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.25 -11.21 6.67 99.48 0.66 -10.54 16 22 N -0.35 -15.18 10.97 -58.94 -0.65 -15.82 16 23 N -0.48 -13.52 7.44 -50.72 -0.38 -13.90 16 24 H 0.46 8.89 8.96 -213.10 -1.91 6.98 16 25 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.43 13.72 6.88 -92.70 -0.64 13.08 16 29 H 0.14 3.81 6.42 -2.91 -0.02 3.79 16 30 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.11 4.77 4.88 -2.91 -0.01 4.75 16 33 H 0.29 15.65 8.29 -92.71 -0.77 14.88 16 Total: -1.00 -85.95 284.88 1.76 -84.19 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -1.44 Total: 25.54 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.11 Total: 4.30 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -4.54 Total: -128.13 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.05 Total: -31.68 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.68 Total: 45.78 kcal Total: -85.95 1.76 -84.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143727152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.859 kcal (2) G-P(sol) polarization free energy of solvation -85.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds