Wall clock time and date at job start Mon Mar 30 2020 01:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28869 * 125.95273 * 2 1 4 4 C 1.30932 * 109.00783 * 180.12938 * 3 2 1 5 5 N 1.32959 * 108.47907 * 359.56769 * 4 3 2 6 6 C 1.32168 * 107.31359 * 0.25700 * 5 4 3 7 7 C 1.47722 * 126.44849 * 180.02562 * 6 5 4 8 8 O 1.21567 * 120.00098 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99772 * 359.97430 * 7 6 5 10 10 C 1.39833 * 119.99910 * 174.89928 * 9 7 6 11 11 C 1.39316 * 119.94998 * 325.51303 * 10 9 7 12 12 C 1.38477 * 120.42836 * 179.72358 * 11 10 9 13 13 C 1.37691 * 120.32023 * 0.55011 * 12 11 10 14 14 C 1.40744 * 119.89359 * 359.72613 * 13 12 11 15 15 C 1.41409 * 120.20944 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00119 * 205.17151 * 15 14 13 17 17 C 1.39925 * 119.99849 * 25.17884 * 15 14 13 18 18 N 1.30827 * 120.00412 * 16.80044 * 17 15 14 19 19 Si 1.86807 * 119.99882 * 196.80870 * 17 15 14 20 20 H 1.48499 * 109.47017 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47231 * 119.99619 * 19 17 15 22 22 H 1.48505 * 109.46766 * 239.99810 * 19 17 15 23 23 C 1.38266 * 119.95088 * 145.78503 * 10 9 7 24 24 H 1.08999 * 109.46611 * 270.35213 * 1 2 3 25 25 H 1.08993 * 109.47305 * 30.35691 * 1 2 3 26 26 H 1.09002 * 109.46800 * 150.35976 * 1 2 3 27 27 H 1.08006 * 125.75902 * 179.82264 * 4 3 2 28 28 H 0.97001 * 120.00463 * 354.89514 * 9 7 6 29 29 H 1.08008 * 119.78703 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.84238 * 180.25523 * 12 11 10 31 31 H 1.08001 * 120.05394 * 179.74754 * 13 12 11 32 32 H 0.96995 * 120.00459 * 180.02562 * 18 17 15 33 33 H 1.08003 * 120.16566 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4741 0.6616 -0.0028 5 7 3.5097 -0.6675 0.0049 6 6 2.2589 -1.0945 0.0068 7 6 1.8122 -2.5025 0.0152 8 8 0.6249 -2.7636 0.0166 9 7 2.7211 -3.4977 0.0214 10 6 2.3018 -4.8267 0.1371 11 6 1.1911 -5.1402 0.9174 12 6 0.7638 -6.4523 1.0342 13 6 1.4397 -7.4635 0.3889 14 6 2.5670 -7.1627 -0.3983 15 6 3.2658 -8.1960 -1.0645 16 1 4.3081 -8.0676 -1.3165 17 6 2.6069 -9.3846 -1.3972 18 7 1.2993 -9.4289 -1.4005 19 14 3.5941 -10.9085 -1.8364 20 1 5.0442 -10.5981 -1.7590 21 1 3.2696 -12.0002 -0.8835 22 1 3.2532 -11.3383 -3.2164 23 6 2.9936 -5.8283 -0.5186 24 1 -0.3632 0.0063 1.0277 25 1 -0.3633 0.8867 -0.5193 26 1 -0.3633 -0.8932 -0.5083 27 1 4.3333 1.3160 -0.0062 28 1 3.6660 -3.2922 -0.0544 29 1 0.6568 -4.3543 1.4306 30 1 -0.1008 -6.6841 1.6383 31 1 1.1052 -8.4857 0.4863 32 1 0.8425 -10.2530 -1.6308 33 1 3.8572 -5.5870 -1.1206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146998236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:08 Heat of formation + Delta-G solvation = 65.120284 kcal Electronic energy + Delta-G solvation = -19626.318988 eV Core-core repulsion = 16460.325749 eV Total energy + Delta-G solvation = -3165.993239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.56659 -41.26960 -39.04722 -36.46852 -35.55685 -34.84355 -33.01787 -31.78494 -30.19146 -28.62281 -27.20790 -25.55598 -23.71562 -22.98666 -22.49705 -21.43110 -19.55473 -19.12733 -17.96741 -17.75410 -17.42954 -16.80201 -16.59860 -16.04784 -15.88628 -15.38849 -14.92643 -14.67882 -14.22338 -14.10216 -14.01937 -13.58383 -13.15710 -13.02229 -12.91172 -12.74326 -12.32752 -11.95939 -11.62406 -11.50918 -11.49161 -11.36463 -11.09909 -10.83111 -10.65676 -9.42915 -8.84153 -8.61092 -6.35626 -0.18048 0.87017 0.96547 1.04803 1.41025 1.42665 1.54468 1.57514 1.98161 2.03193 2.23867 2.75156 2.92351 3.39874 3.70632 3.76771 4.22289 4.26411 4.41413 4.57469 4.64612 4.91909 5.01777 5.07416 5.11577 5.15590 5.23414 5.27181 5.32374 5.66735 5.77411 6.04731 6.08549 6.19604 6.43895 6.65837 6.82468 6.93248 6.96708 7.03512 8.35073 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039452 B = 0.003825 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.560421 B = 7317.829461 C = 7768.590377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.258 5.258 3 N -0.310 5.310 4 C 0.163 3.837 5 N -0.487 5.487 6 C 0.149 3.851 7 C 0.602 3.398 8 O -0.533 6.533 9 N -0.630 5.630 10 C 0.158 3.842 11 C -0.233 4.233 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.096 3.904 15 C -0.496 4.496 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.825 5.825 19 Si 0.984 3.016 20 H -0.256 1.256 21 H -0.265 1.265 22 H -0.268 1.268 23 C -0.249 4.249 24 H 0.106 0.894 25 H 0.125 0.875 26 H 0.105 0.895 27 H 0.264 0.736 28 H 0.424 0.576 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.289 0.711 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 13.914 2.051 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.053 5.053 3 N -0.149 5.149 4 C -0.135 4.135 5 N -0.215 5.215 6 C -0.126 4.126 7 C 0.386 3.614 8 O -0.408 6.408 9 N -0.274 5.274 10 C 0.066 3.934 11 C -0.254 4.254 12 C -0.113 4.113 13 C -0.209 4.209 14 C 0.093 3.907 15 C -0.525 4.525 16 H 0.098 0.902 17 C -0.179 4.179 18 N -0.451 5.451 19 Si 0.804 3.196 20 H -0.180 1.180 21 H -0.189 1.189 22 H -0.193 1.193 23 C -0.270 4.270 24 H 0.124 0.876 25 H 0.143 0.857 26 H 0.124 0.876 27 H 0.279 0.721 28 H 0.262 0.738 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.270 14.051 2.009 14.196 hybrid contribution 0.444 -0.732 -0.294 0.906 sum 0.714 13.319 1.715 13.448 Atomic orbital electron populations 1.22760 0.69850 1.07299 1.06663 1.47343 1.10459 1.02083 1.45456 1.74223 1.04789 1.13465 1.22389 1.26797 0.95064 0.90091 1.01592 1.71227 1.18065 1.12777 1.19390 1.23780 0.87677 0.91665 1.09502 1.16589 0.85509 0.82141 0.77158 1.90811 1.16438 1.83462 1.50092 1.42976 1.10925 1.03723 1.69817 1.17403 0.96964 0.81588 0.97478 1.20451 1.01439 0.96266 1.07218 1.20811 0.98791 0.92602 0.99111 1.21358 0.99943 0.98463 1.01176 1.17734 0.91725 0.91638 0.89635 1.19850 0.98406 0.99585 1.34649 0.90158 1.26759 0.95738 1.02865 0.92547 1.69882 1.10202 1.29482 1.35494 0.85137 0.79403 0.76539 0.78497 1.17985 1.18925 1.19283 1.20878 1.06018 0.92148 1.07986 0.87556 0.85708 0.87636 0.72067 0.73776 0.87288 0.86759 0.87605 0.90082 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.86 127.77 1.39 2.73 16 2 N -0.26 -6.45 3.74 -361.56 -1.35 -7.80 16 3 N -0.31 -7.25 12.08 -61.29 -0.74 -7.99 16 4 C 0.16 3.46 13.03 180.79 2.36 5.82 16 5 N -0.49 -13.16 11.10 -193.34 -2.15 -15.31 16 6 C 0.15 4.38 7.83 136.68 1.07 5.45 16 7 C 0.60 21.01 7.55 86.75 0.66 21.67 16 8 O -0.53 -20.62 12.42 -3.93 -0.05 -20.67 16 9 N -0.63 -22.92 5.33 -306.37 -1.63 -24.55 16 10 C 0.16 7.03 6.24 38.13 0.24 7.27 16 11 C -0.23 -10.66 8.66 22.59 0.20 -10.46 16 12 C -0.09 -4.47 10.02 22.20 0.22 -4.25 16 13 C -0.19 -9.96 8.69 22.75 0.20 -9.77 16 14 C 0.10 5.11 5.57 -21.31 -0.12 4.99 16 15 C -0.50 -26.19 9.05 23.46 0.21 -25.97 16 16 H 0.08 4.06 7.90 -2.91 -0.02 4.03 16 17 C 0.04 1.78 5.16 85.25 0.44 2.22 16 18 N -0.82 -42.74 10.94 21.82 0.24 -42.50 16 19 Si 0.98 37.45 29.59 68.60 2.03 39.48 16 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 23 C -0.25 -11.99 9.70 22.86 0.22 -11.77 16 24 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.11 2.27 6.32 -2.39 -0.02 2.25 16 27 H 0.26 2.93 8.06 -2.91 -0.02 2.90 16 28 H 0.42 13.42 8.55 -92.71 -0.79 12.63 16 29 H 0.11 4.77 6.47 -2.91 -0.02 4.75 16 30 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 31 H 0.11 5.77 6.17 -2.91 -0.02 5.75 16 32 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 33 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -64.34 293.04 3.80 -60.54 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.38 Total: 30.87 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 7.08 Total: -12.07 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -5.63 Total: -98.15 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -64.34 3.80 -60.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146998236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.661 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds