Wall clock time and date at job start Mon Mar 30 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33320 * 126.81797 * 2 1 4 4 N 1.28510 * 109.44402 * 180.02562 * 3 2 1 5 5 N 1.28711 * 110.64336 * 0.02562 * 4 3 2 6 6 H 0.97000 * 126.03731 * 179.97438 * 5 4 3 7 7 C 1.37030 * 126.81447 * 180.31008 * 2 1 3 8 8 C 1.47195 * 127.19178 * 359.96838 * 7 2 1 9 9 O 1.21630 * 119.99814 * 0.17234 * 8 7 2 10 10 N 1.34777 * 120.00124 * 180.17096 * 8 7 2 11 11 C 1.39846 * 120.00253 * 175.09602 * 10 8 7 12 12 C 1.39319 * 119.94878 * 326.46432 * 11 10 8 13 13 C 1.38483 * 120.42542 * 179.76016 * 12 11 10 14 14 C 1.37685 * 120.32132 * 0.51347 * 13 12 11 15 15 C 1.40748 * 119.89271 * 359.74374 * 14 13 12 16 16 C 1.41407 * 120.20932 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00201 * 151.36310 * 16 15 14 18 18 C 1.39937 * 119.99922 * 331.36436 * 16 15 14 19 19 N 1.30831 * 119.99605 * 166.74580 * 18 16 15 20 20 Si 1.86795 * 120.00034 * 346.74734 * 18 16 15 21 21 H 1.48496 * 109.47360 * 95.30296 * 20 18 16 22 22 H 1.48503 * 109.47022 * 215.30497 * 20 18 16 23 23 H 1.48499 * 109.47378 * 335.29959 * 20 18 16 24 24 C 1.38262 * 119.95200 * 146.73419 * 11 10 8 25 25 H 1.08998 * 109.46539 * 89.97249 * 1 2 3 26 26 H 1.08999 * 109.46838 * 209.97145 * 1 2 3 27 27 H 1.08999 * 109.46567 * 329.97200 * 1 2 3 28 28 H 0.97002 * 120.00085 * 355.10590 * 10 8 7 29 29 H 1.07994 * 119.78741 * 0.02562 * 12 11 10 30 30 H 1.07998 * 119.83690 * 180.25387 * 13 12 11 31 31 H 1.08004 * 120.05642 * 179.76638 * 14 13 12 32 32 H 0.97003 * 119.99795 * 180.02562 * 19 18 16 33 33 H 1.08005 * 120.15805 * 359.95943 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0673 0.0000 4 7 3.5325 0.6835 -0.0005 5 7 3.6059 -0.6015 -0.0015 6 1 4.4215 -1.1265 -0.0023 7 6 2.3282 -1.0970 -0.0059 8 6 1.9226 -2.5120 -0.0129 9 8 0.7425 -2.8063 -0.0171 10 7 2.8589 -3.4814 -0.0148 11 6 2.4766 -4.8231 0.0821 12 6 1.3598 -5.1753 0.8368 13 6 0.9694 -6.5003 0.9355 14 6 1.6878 -7.4859 0.2966 15 6 2.8214 -7.1459 -0.4651 16 6 3.5638 -8.1528 -1.1244 17 1 4.1031 -7.9201 -2.0307 18 6 3.5995 -9.4507 -0.6026 19 7 4.0592 -10.4359 -1.3306 20 14 2.9910 -9.7767 1.1331 21 1 1.5753 -10.2224 1.0858 22 1 3.8229 -10.8360 1.7585 23 1 3.0912 -8.5308 1.9350 24 6 3.2107 -5.7987 -0.5667 25 1 -0.3632 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3632 0.8898 0.5143 28 1 3.7981 -3.2485 -0.0832 29 1 0.7923 -4.4096 1.3448 30 1 0.0997 -6.7621 1.5198 31 1 1.3817 -8.5184 0.3796 32 1 4.0836 -11.3357 -0.9690 33 1 4.0788 -5.5271 -1.1491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147572745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:47 Heat of formation + Delta-G solvation = 78.266664 kcal Electronic energy + Delta-G solvation = -19673.660572 eV Core-core repulsion = 16508.237403 eV Total energy + Delta-G solvation = -3165.423169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.58170 -39.99047 -37.63877 -35.04610 -34.05012 -33.36038 -32.52848 -30.43821 -29.26186 -27.80088 -25.28768 -24.54608 -22.92248 -21.38060 -21.30643 -20.28651 -18.94927 -17.97948 -16.69773 -16.68909 -16.10916 -15.63405 -14.96383 -14.64942 -14.36913 -13.95445 -13.67165 -13.20698 -12.86053 -12.80643 -12.78170 -12.20019 -12.08704 -11.84303 -11.34957 -11.18547 -10.92882 -10.77155 -10.73609 -10.40036 -9.98308 -9.74890 -9.53836 -9.46729 -9.14459 -7.82872 -7.34637 -7.02467 -4.62215 0.66355 2.02462 2.18795 2.35050 2.51076 2.98321 3.03589 3.12884 3.16439 3.25362 3.89933 4.05915 4.38013 4.43423 4.68767 4.82615 5.29047 5.49829 5.56090 5.72853 5.88037 6.08786 6.17454 6.18121 6.28293 6.36172 6.56126 6.59753 6.97247 7.10974 7.28881 7.50567 7.62216 7.71430 7.88977 8.03492 8.13011 8.24477 8.49571 8.68668 9.99770 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.004080 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.255054 B = 6861.779863 C = 7260.512433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.060 3.940 3 N -0.271 5.271 4 N -0.047 5.047 5 N -0.376 5.376 6 H 0.451 0.549 7 C -0.065 4.065 8 C 0.588 3.412 9 O -0.490 6.490 10 N -0.660 5.660 11 C 0.163 3.837 12 C -0.230 4.230 13 C -0.066 4.066 14 C -0.238 4.238 15 C 0.105 3.895 16 C -0.445 4.445 17 H 0.091 0.909 18 C 0.082 3.918 19 N -0.810 5.810 20 Si 0.915 3.085 21 H -0.271 1.271 22 H -0.293 1.293 23 H -0.241 1.241 24 C -0.229 4.229 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.397 0.603 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.286 0.714 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 12.846 3.981 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 N -0.138 5.138 4 N -0.029 5.029 5 N -0.103 5.103 6 H 0.298 0.702 7 C -0.200 4.200 8 C 0.372 3.628 9 O -0.361 6.361 10 N -0.304 5.304 11 C 0.071 3.929 12 C -0.251 4.251 13 C -0.084 4.084 14 C -0.258 4.258 15 C 0.102 3.898 16 C -0.473 4.473 17 H 0.109 0.891 18 C -0.137 4.137 19 N -0.434 5.434 20 Si 0.742 3.258 21 H -0.197 1.197 22 H -0.221 1.221 23 H -0.164 1.164 24 C -0.251 4.251 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.231 0.769 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.240 13.763 3.902 14.359 hybrid contribution 0.491 -1.555 0.510 1.709 sum -0.749 12.208 4.412 13.002 Atomic orbital electron populations 1.20338 0.84709 1.04478 1.03939 1.22345 0.98683 0.86846 1.00123 1.74937 0.95180 1.26000 1.17653 1.78167 1.16059 0.92253 1.16417 1.45480 1.08898 1.07012 1.48908 0.70200 1.22218 0.84954 0.96608 1.16171 1.16721 0.86291 0.81898 0.77894 1.90865 1.16267 1.81291 1.47713 1.43318 1.08996 1.05837 1.72262 1.17431 0.97247 0.80079 0.98120 1.20323 1.01179 0.95959 1.07669 1.20480 0.97767 0.92563 0.97635 1.21039 0.99143 0.97741 1.07840 1.17471 0.90545 0.91911 0.89903 1.19477 1.26283 0.91903 1.09659 0.89135 1.26179 0.92189 0.95202 1.00108 1.69655 1.34934 1.01381 1.37412 0.86274 0.78101 0.79072 0.82306 1.19720 1.22113 1.16386 1.20669 1.03428 0.92747 1.08226 0.89846 0.88588 0.90310 0.76906 0.87272 0.88199 0.88218 0.90323 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.92 36.01 0.36 -0.46 16 2 C 0.06 0.77 7.30 -82.38 -0.60 0.17 16 3 N -0.27 -3.67 12.35 33.52 0.41 -3.26 16 4 N -0.05 -0.58 13.35 60.35 0.81 0.22 16 5 N -0.38 -3.74 6.98 33.31 0.23 -3.51 16 6 H 0.45 2.68 8.33 -190.33 -1.59 1.10 16 7 C -0.07 -0.82 7.16 -82.34 -0.59 -1.41 16 8 C 0.59 8.75 7.54 -12.62 -0.10 8.66 16 9 O -0.49 -8.73 12.67 5.25 0.07 -8.66 16 10 N -0.66 -9.70 5.33 -10.95 -0.06 -9.76 16 11 C 0.16 3.16 6.26 -83.79 -0.52 2.63 16 12 C -0.23 -4.73 8.66 -39.09 -0.34 -5.07 16 13 C -0.07 -1.39 10.02 -39.69 -0.40 -1.78 16 14 C -0.24 -5.52 6.92 -38.84 -0.27 -5.79 16 15 C 0.11 2.53 5.19 -106.85 -0.55 1.98 16 16 C -0.44 -11.49 9.61 -37.74 -0.36 -11.85 16 17 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 18 C 0.08 2.07 5.47 -17.34 -0.09 1.98 16 19 N -0.81 -20.94 13.93 55.55 0.77 -20.17 16 20 Si 0.92 20.03 24.37 -169.99 -4.14 15.89 16 21 H -0.27 -5.79 6.77 56.52 0.38 -5.40 16 22 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.24 -5.33 6.48 56.52 0.37 -4.96 16 24 C -0.23 -4.88 9.70 -38.68 -0.38 -5.25 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.12 6.63 -51.93 -0.34 0.77 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.40 4.23 8.09 -40.82 -0.33 3.90 16 29 H 0.11 2.16 6.39 -52.49 -0.34 1.83 16 30 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.10 2.30 4.20 -52.48 -0.22 2.08 16 32 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 33 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -29.97 285.46 -5.57 -35.54 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.12 Total: 5.59 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.85 Total: -16.19 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 2.17 Total: -36.47 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.14 Total: 15.89 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.97 -5.57 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147572745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.806 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds