Wall clock time and date at job start Mon Mar 30 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30792 * 125.29461 * 2 1 4 4 C 1.34244 * 110.11187 * 179.97438 * 3 2 1 5 5 N 1.32883 * 126.12307 * 179.97438 * 4 3 2 6 6 C 1.34140 * 120.00064 * 0.02811 * 5 4 3 7 7 O 1.22077 * 120.00146 * 0.02562 * 6 5 4 8 8 C 1.46345 * 119.99735 * 179.97438 * 6 5 4 9 9 H 1.07995 * 119.99997 * 0.02562 * 8 6 5 10 10 C 1.40117 * 119.99948 * 179.97438 * 8 6 5 11 11 N 1.30628 * 119.99600 * 0.02562 * 10 8 6 12 12 Si 1.86794 * 120.00300 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46792 * 60.00257 * 12 10 8 14 14 H 1.48496 * 109.47215 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47354 * 300.00569 * 12 10 8 16 16 N 1.37400 * 107.74870 * 0.02562 * 4 3 2 17 17 C 1.39723 * 127.03471 * 179.97438 * 16 4 3 18 18 C 1.38938 * 120.07730 * 314.72736 * 17 16 4 19 19 C 1.38087 * 119.92240 * 179.70047 * 18 17 16 20 20 C 1.38304 * 120.07684 * 0.57371 * 19 18 17 21 21 C 1.38305 * 120.15247 * 359.72303 * 20 19 18 22 22 C 1.38094 * 120.07444 * 359.97438 * 21 20 19 23 23 N 1.35065 * 125.29134 * 179.97438 * 2 1 3 24 24 H 0.97007 * 126.59970 * 0.03205 * 23 2 1 25 25 H 1.09010 * 109.47277 * 90.02218 * 1 2 3 26 26 H 1.08998 * 109.47852 * 210.01888 * 1 2 3 27 27 H 1.09002 * 109.46907 * 330.02820 * 1 2 3 28 28 H 0.97000 * 119.99748 * 179.97438 * 11 10 8 29 29 H 1.08007 * 120.03966 * 359.97438 * 18 17 16 30 30 H 1.08002 * 119.96440 * 180.32125 * 19 18 17 31 31 H 1.07995 * 119.92278 * 179.70340 * 20 19 18 32 32 H 1.07998 * 119.96166 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.03515 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2627 1.0675 0.0000 4 6 3.5583 0.7159 0.0006 5 7 4.5954 1.5467 0.0002 6 6 4.3927 2.8727 -0.0001 7 8 3.2553 3.3163 0.0003 8 6 5.5349 3.7875 0.0001 9 1 6.5410 3.3950 0.0001 10 6 5.3232 5.1726 -0.0009 11 7 4.1062 5.6472 -0.0015 12 14 6.7811 6.3403 -0.0013 13 1 7.6053 6.1026 -1.2136 14 1 6.2922 7.7425 -0.0017 15 1 7.6050 6.1042 1.2115 16 7 3.6198 -0.6567 0.0004 17 6 4.7717 -1.4475 0.0003 18 6 5.8247 -1.1439 -0.8538 19 6 6.9641 -1.9239 -0.8469 20 6 7.0532 -3.0133 0.0005 21 6 6.0044 -3.3220 0.8477 22 6 4.8645 -2.5425 0.8504 23 7 2.2873 -1.1024 0.0005 24 1 1.9858 -2.0245 0.0005 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3635 -0.8898 0.5141 27 1 -0.3633 0.8903 0.5134 28 1 3.9596 6.6060 -0.0018 29 1 5.7538 -0.2961 -1.5193 30 1 7.7851 -1.6854 -1.5068 31 1 7.9436 -3.6244 0.0005 32 1 6.0774 -4.1731 1.5084 33 1 4.0461 -2.7840 1.5125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148953425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:31 Heat of formation + Delta-G solvation = 128.634422 kcal Electronic energy + Delta-G solvation = -19981.483642 eV Core-core repulsion = 16818.244584 eV Total energy + Delta-G solvation = -3163.239059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67098 -38.91760 -36.68972 -34.23673 -33.21131 -32.10139 -30.88566 -30.48939 -29.99500 -27.72137 -26.22628 -23.14776 -22.56023 -21.46035 -20.87009 -19.24192 -18.20640 -16.69641 -16.15615 -15.83496 -15.61657 -15.08852 -14.61229 -14.22393 -13.97757 -13.68782 -13.39810 -13.18846 -12.85908 -12.63787 -12.55699 -12.00878 -11.62448 -11.18042 -11.10671 -10.93276 -10.49454 -10.23122 -10.19652 -10.03498 -9.80955 -8.93284 -8.68596 -8.58561 -8.49106 -7.05760 -6.82914 -6.00388 -4.39370 1.10312 1.42526 1.62907 1.84703 3.25821 3.29358 3.33313 3.62949 3.75505 4.07695 4.26223 4.50270 4.87581 4.94252 4.96996 5.03029 5.17518 5.39885 5.41578 5.45197 5.58339 5.81536 5.84110 5.96868 6.18377 6.23231 6.32876 6.40887 6.57134 6.69152 6.94219 7.20522 7.59029 7.82914 8.45003 8.48305 8.97488 9.16462 9.47389 10.75802 11.09265 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.006145 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.644305 B = 4555.377641 C = 6155.513154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.356 3.644 3 N -0.494 5.494 4 C 0.543 3.457 5 N -0.590 5.590 6 C 0.499 3.501 7 O -0.551 6.551 8 C -0.490 4.490 9 H 0.071 0.929 10 C 0.075 3.925 11 N -0.760 5.760 12 Si 0.910 3.090 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.268 1.268 16 N -0.387 5.387 17 C 0.188 3.812 18 C -0.097 4.097 19 C -0.097 4.097 20 C -0.134 4.134 21 C -0.105 4.105 22 C -0.145 4.145 23 N -0.520 5.520 24 H 0.438 0.562 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.267 0.733 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -19.747 -0.420 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 N -0.227 5.227 4 C 0.184 3.816 5 N -0.343 5.343 6 C 0.302 3.698 7 O -0.432 6.432 8 C -0.526 4.526 9 H 0.089 0.911 10 C -0.144 4.144 11 N -0.390 5.390 12 Si 0.735 3.265 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.193 1.193 16 N -0.190 5.190 17 C 0.094 3.906 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.153 4.153 21 C -0.124 4.124 22 C -0.167 4.167 23 N -0.251 5.251 24 H 0.284 0.716 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.284 -18.373 -0.417 18.520 hybrid contribution 0.295 -0.452 0.125 0.554 sum -1.988 -18.825 -0.291 18.932 Atomic orbital electron populations 1.20504 0.83314 1.05090 1.04783 1.24211 0.95751 0.81904 0.90180 1.72213 1.01106 1.23850 1.25502 1.21190 0.88624 0.80232 0.91566 1.69936 1.26208 1.08508 1.29615 1.18889 0.89963 0.81927 0.79030 1.90736 1.24640 1.79200 1.48644 1.20865 0.93025 0.89557 1.49106 0.91061 1.25859 0.96250 0.98846 0.93405 1.70041 1.20920 1.13378 1.34693 0.86398 0.81867 0.78763 0.79509 1.19237 1.20597 1.19254 1.44498 0.94124 1.04629 1.75731 1.17294 0.84743 0.92277 0.96287 1.21203 0.93192 1.00177 0.97310 1.21040 0.97043 0.94477 0.98979 1.21149 0.98814 0.98053 0.97260 1.20876 0.93009 0.99374 0.99096 1.20981 0.99676 0.97269 0.98754 1.44698 0.95411 1.08772 1.76240 0.71568 0.88627 0.89987 0.87609 0.92178 0.84418 0.85250 0.85902 0.85790 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.51 36.00 0.38 -0.35 16 2 C 0.36 5.64 8.17 -155.15 -1.27 4.38 16 3 N -0.49 -11.75 9.19 -11.03 -0.10 -11.85 16 4 C 0.54 13.48 8.16 -321.46 -2.62 10.86 16 5 N -0.59 -17.02 9.68 -14.30 -0.14 -17.15 16 6 C 0.50 16.52 7.66 -13.28 -0.10 16.42 16 7 O -0.55 -19.62 13.57 4.85 0.07 -19.55 16 8 C -0.49 -15.68 9.63 -35.62 -0.34 -16.02 16 9 H 0.07 2.16 7.85 -52.49 -0.41 1.75 16 10 C 0.08 2.28 5.50 -17.36 -0.10 2.19 16 11 N -0.76 -24.29 11.82 55.55 0.66 -23.63 16 12 Si 0.91 21.69 29.56 -169.99 -5.02 16.67 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 N -0.39 -7.21 3.76 -11.44 -0.04 -7.26 16 17 C 0.19 3.10 6.28 -83.74 -0.53 2.57 16 18 C -0.10 -1.60 9.27 -39.38 -0.36 -1.97 16 19 C -0.10 -1.25 10.04 -39.61 -0.40 -1.65 16 20 C -0.13 -1.48 10.04 -39.53 -0.40 -1.87 16 21 C -0.10 -1.15 10.04 -39.61 -0.40 -1.55 16 22 C -0.15 -1.89 9.91 -39.37 -0.39 -2.28 16 23 N -0.52 -7.12 7.25 32.72 0.24 -6.88 16 24 H 0.44 3.73 8.96 -182.28 -1.63 2.09 16 25 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.27 7.70 8.29 -40.82 -0.34 7.37 16 29 H 0.14 2.60 7.73 -52.48 -0.41 2.19 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -43.67 300.86 -10.89 -54.55 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.55 Total: -0.14 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -6.53 Total: 10.71 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: 0.61 Total: -66.78 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.07 Total: -19.55 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -43.67 -10.89 -54.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148953425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.186 kcal (2) G-P(sol) polarization free energy of solvation -43.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds