Wall clock time and date at job start Mon Mar 30 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30792 * 125.29461 * 2 1 4 4 C 1.34244 * 110.11187 * 179.97438 * 3 2 1 5 5 N 1.32883 * 126.12307 * 179.97438 * 4 3 2 6 6 C 1.34140 * 120.00064 * 0.02811 * 5 4 3 7 7 O 1.22077 * 120.00146 * 0.02562 * 6 5 4 8 8 C 1.46345 * 119.99735 * 179.97438 * 6 5 4 9 9 H 1.07995 * 119.99997 * 0.02562 * 8 6 5 10 10 C 1.40117 * 119.99948 * 179.97438 * 8 6 5 11 11 N 1.30628 * 119.99600 * 0.02562 * 10 8 6 12 12 Si 1.86794 * 120.00300 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46792 * 60.00257 * 12 10 8 14 14 H 1.48496 * 109.47215 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47354 * 300.00569 * 12 10 8 16 16 N 1.37400 * 107.74870 * 0.02562 * 4 3 2 17 17 C 1.39723 * 127.03471 * 179.97438 * 16 4 3 18 18 C 1.38938 * 120.07730 * 314.72736 * 17 16 4 19 19 C 1.38087 * 119.92240 * 179.70047 * 18 17 16 20 20 C 1.38304 * 120.07684 * 0.57371 * 19 18 17 21 21 C 1.38305 * 120.15247 * 359.72303 * 20 19 18 22 22 C 1.38094 * 120.07444 * 359.97438 * 21 20 19 23 23 N 1.35065 * 125.29134 * 179.97438 * 2 1 3 24 24 H 0.97007 * 126.59970 * 0.03205 * 23 2 1 25 25 H 1.09010 * 109.47277 * 90.02218 * 1 2 3 26 26 H 1.08998 * 109.47852 * 210.01888 * 1 2 3 27 27 H 1.09002 * 109.46907 * 330.02820 * 1 2 3 28 28 H 0.97000 * 119.99748 * 179.97438 * 11 10 8 29 29 H 1.08007 * 120.03966 * 359.97438 * 18 17 16 30 30 H 1.08002 * 119.96440 * 180.32125 * 19 18 17 31 31 H 1.07995 * 119.92278 * 179.70340 * 20 19 18 32 32 H 1.07998 * 119.96166 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.03515 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2627 1.0675 0.0000 4 6 3.5583 0.7159 0.0006 5 7 4.5954 1.5467 0.0002 6 6 4.3927 2.8727 -0.0001 7 8 3.2553 3.3163 0.0003 8 6 5.5349 3.7875 0.0001 9 1 6.5410 3.3950 0.0001 10 6 5.3232 5.1726 -0.0009 11 7 4.1062 5.6472 -0.0015 12 14 6.7811 6.3403 -0.0013 13 1 7.6053 6.1026 -1.2136 14 1 6.2922 7.7425 -0.0017 15 1 7.6050 6.1042 1.2115 16 7 3.6198 -0.6567 0.0004 17 6 4.7717 -1.4475 0.0003 18 6 5.8247 -1.1439 -0.8538 19 6 6.9641 -1.9239 -0.8469 20 6 7.0532 -3.0133 0.0005 21 6 6.0044 -3.3220 0.8477 22 6 4.8645 -2.5425 0.8504 23 7 2.2873 -1.1024 0.0005 24 1 1.9858 -2.0245 0.0005 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3635 -0.8898 0.5141 27 1 -0.3633 0.8903 0.5134 28 1 3.9596 6.6060 -0.0018 29 1 5.7538 -0.2961 -1.5193 30 1 7.7851 -1.6854 -1.5068 31 1 7.9436 -3.6244 0.0005 32 1 6.0774 -4.1731 1.5084 33 1 4.0461 -2.7840 1.5125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148953425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:30 Heat of formation + Delta-G solvation = 95.984893 kcal Electronic energy + Delta-G solvation = -19982.899432 eV Core-core repulsion = 16818.244584 eV Total energy + Delta-G solvation = -3164.654849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.22153 -40.02668 -38.86751 -35.59686 -35.13560 -34.22987 -31.96028 -31.86601 -31.48256 -28.97254 -28.43504 -24.64998 -23.66208 -23.10588 -22.23565 -20.88192 -19.76657 -18.38105 -17.72993 -17.27592 -17.22823 -16.91651 -16.08018 -15.69556 -15.39392 -14.99231 -14.78795 -14.49964 -14.38612 -14.06752 -13.47126 -13.41309 -13.21913 -12.78865 -12.75964 -12.59969 -12.20623 -12.06477 -11.83729 -11.55481 -11.30608 -10.87941 -10.67914 -9.97718 -9.80183 -9.34428 -8.64843 -8.24274 -6.77818 -0.16721 0.20538 0.37440 0.51602 1.34595 1.41181 1.52633 1.88861 2.26533 2.54387 2.75797 2.87958 3.34880 3.83554 3.88797 3.96896 4.02530 4.21322 4.24417 4.40667 4.46159 4.68499 4.72342 4.77253 4.88011 5.04936 5.06777 5.30463 5.38209 5.48658 5.52724 5.61690 5.95688 6.11559 6.44835 6.83017 6.89893 6.93527 7.42187 8.56756 8.83008 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.006145 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.644305 B = 4555.377641 C = 6155.513154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.382 3.618 3 N -0.584 5.584 4 C 0.550 3.450 5 N -0.651 5.651 6 C 0.488 3.512 7 O -0.602 6.602 8 C -0.538 4.538 9 H 0.071 0.929 10 C 0.019 3.981 11 N -0.815 5.815 12 Si 1.005 2.995 13 H -0.254 1.254 14 H -0.263 1.263 15 H -0.255 1.255 16 N -0.381 5.381 17 C 0.142 3.858 18 C -0.125 4.125 19 C -0.102 4.102 20 C -0.116 4.116 21 C -0.095 4.095 22 C -0.136 4.136 23 N -0.479 5.479 24 H 0.467 0.533 25 H 0.122 0.878 26 H 0.138 0.862 27 H 0.095 0.905 28 H 0.276 0.724 29 H 0.096 0.904 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -23.595 0.453 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.108 3.892 3 N -0.320 5.320 4 C 0.189 3.811 5 N -0.409 5.409 6 C 0.291 3.709 7 O -0.487 6.487 8 C -0.574 4.574 9 H 0.089 0.911 10 C -0.195 4.195 11 N -0.445 5.445 12 Si 0.823 3.177 13 H -0.178 1.178 14 H -0.187 1.187 15 H -0.179 1.179 16 N -0.181 5.181 17 C 0.051 3.949 18 C -0.147 4.147 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.113 4.113 22 C -0.157 4.157 23 N -0.211 5.211 24 H 0.320 0.680 25 H 0.140 0.860 26 H 0.156 0.844 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.164 0.836 31 H 0.182 0.818 32 H 0.186 0.814 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.881 -22.462 0.453 22.545 hybrid contribution -0.019 0.203 -0.162 0.260 sum -1.900 -22.259 0.291 22.342 Atomic orbital electron populations 1.20926 0.78136 1.07304 1.07022 1.25455 0.97931 0.80446 0.85414 1.72158 1.01483 1.27639 1.30735 1.21377 0.88937 0.82127 0.88611 1.69743 1.27469 1.06859 1.36845 1.19369 0.89619 0.84054 0.77842 1.90640 1.25993 1.80548 1.51555 1.21260 0.93020 0.91237 1.51858 0.91063 1.27163 1.00356 1.00390 0.91582 1.70203 1.24206 1.14309 1.35793 0.85003 0.76651 0.75805 0.80273 1.17832 1.18679 1.17935 1.44651 0.96574 1.03375 1.73499 1.17716 0.84309 0.93999 0.98856 1.21130 0.95246 1.00106 0.98171 1.21307 0.96136 0.94734 0.99907 1.21659 1.00064 0.96645 0.95042 1.21422 0.91520 0.99631 0.98719 1.21262 1.01318 0.95491 0.97628 1.44870 0.93317 1.10106 1.72805 0.67971 0.86022 0.84358 0.88663 0.91433 0.88610 0.83624 0.81838 0.81398 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.51 71.24 0.75 -0.44 16 2 C 0.38 11.79 8.17 138.04 1.13 12.91 16 3 N -0.58 -29.24 9.19 -188.82 -1.74 -30.98 16 4 C 0.55 29.08 8.16 261.01 2.13 31.21 16 5 N -0.65 -40.92 9.68 -317.58 -3.07 -43.99 16 6 C 0.49 35.21 7.66 86.45 0.66 35.88 16 7 O -0.60 -46.56 13.57 -5.57 -0.08 -46.63 16 8 C -0.54 -37.12 9.63 24.84 0.24 -36.88 16 9 H 0.07 4.66 7.85 -2.91 -0.02 4.64 16 10 C 0.02 1.23 5.50 85.33 0.47 1.70 16 11 N -0.81 -55.27 11.82 21.85 0.26 -55.01 16 12 Si 1.00 46.46 29.56 68.60 2.03 48.49 16 13 H -0.25 -11.09 7.11 99.48 0.71 -10.39 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 16 N -0.38 -14.44 3.76 -190.10 -0.71 -15.15 16 17 C 0.14 4.69 6.28 38.22 0.24 4.93 16 18 C -0.12 -4.31 9.27 22.40 0.21 -4.10 16 19 C -0.10 -2.55 10.04 22.25 0.22 -2.32 16 20 C -0.12 -2.07 10.04 22.30 0.22 -1.84 16 21 C -0.09 -1.61 10.04 22.25 0.22 -1.39 16 22 C -0.14 -3.11 9.91 22.40 0.22 -2.89 16 23 N -0.48 -12.20 7.25 -50.38 -0.37 -12.56 16 24 H 0.47 6.03 8.96 -213.05 -1.91 4.12 16 25 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.28 16.70 8.29 -92.71 -0.77 15.93 16 29 H 0.10 4.07 7.73 -2.91 -0.02 4.05 16 30 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -111.36 300.86 2.28 -109.08 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -0.76 Total: 10.00 kcal Atomic # 6 Polarization: 30.04 SS G_CDS: 6.72 Total: 36.76 kcal Atomic # 7 Polarization: -152.06 SS G_CDS: -5.63 Total: -157.69 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.08 Total: -46.63 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -111.36 2.28 -109.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148953425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.064 kcal (2) G-P(sol) polarization free energy of solvation -111.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds