Wall clock time and date at job start Mon Mar 30 2020 01:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35364 * 126.38387 * 2 1 4 4 C 1.41518 * 105.50613 * 180.14445 * 3 2 1 5 5 C 1.47662 * 126.52582 * 179.84462 * 4 3 2 6 6 O 1.21575 * 119.99680 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00383 * 179.71221 * 5 4 3 8 8 C 1.39177 * 120.00397 * 175.13833 * 7 5 4 9 9 C 1.39696 * 119.58115 * 185.27182 * 8 7 5 10 10 C 1.38637 * 119.49723 * 179.97438 * 9 8 7 11 11 C 1.38355 * 118.67069 * 359.97438 * 10 9 8 12 12 C 1.40576 * 119.13316 * 0.02562 * 11 10 9 13 13 C 1.41342 * 119.78531 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99562 * 359.97438 * 13 12 11 15 15 C 1.40022 * 119.99841 * 180.02562 * 13 12 11 16 16 N 1.30745 * 119.99982 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47269 * 89.99903 * 17 15 13 19 19 H 1.48495 * 109.47158 * 209.99698 * 17 15 13 20 20 H 1.48500 * 109.46971 * 329.99749 * 17 15 13 21 21 N 1.31917 * 119.57369 * 4.98753 * 8 7 5 22 22 N 1.31826 * 106.95313 * 359.58504 * 4 3 2 23 23 N 1.28462 * 110.07387 * 0.26003 * 22 4 3 24 24 H 0.97011 * 124.88757 * 179.97438 * 23 22 4 25 25 H 1.09001 * 109.47106 * 270.29719 * 1 2 3 26 26 H 1.09002 * 109.47650 * 30.28947 * 1 2 3 27 27 H 1.08998 * 109.47200 * 150.29639 * 1 2 3 28 28 H 1.08005 * 127.24788 * 359.97438 * 3 2 1 29 29 H 0.97002 * 120.00200 * 355.13332 * 7 5 4 30 30 H 1.08005 * 120.24824 * 359.94549 * 9 8 7 31 31 H 1.08003 * 120.66592 * 180.02562 * 10 9 8 32 32 H 1.08003 * 120.43404 * 179.97438 * 11 10 9 33 33 H 0.96999 * 119.99888 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6322 0.5854 -0.0034 5 6 4.8762 1.3809 -0.0080 6 8 4.8210 2.5954 -0.0096 7 7 6.0727 0.7607 -0.0051 8 6 7.2432 1.5061 -0.1115 9 6 8.4715 0.8495 -0.2189 10 6 9.6364 1.5937 -0.3254 11 6 9.5447 2.9742 -0.3223 12 6 8.2790 3.5758 -0.2113 13 6 8.1693 4.9850 -0.2073 14 1 9.0563 5.5958 -0.2890 15 6 6.9109 5.5889 -0.0965 16 7 5.8374 4.8493 0.0029 17 14 6.7659 7.4512 -0.0919 18 1 6.6016 7.9384 -1.4851 19 1 5.5865 7.8539 0.7156 20 1 7.9943 8.0419 0.4974 21 7 7.1780 2.8237 -0.1152 22 7 3.5420 -0.7297 0.0039 23 7 2.3081 -1.0870 0.0060 24 1 1.9964 -2.0057 0.0108 25 1 -0.3633 0.0053 1.0277 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3633 -0.8926 -0.5092 28 1 2.0055 2.1260 -0.0004 29 1 6.1182 -0.2052 0.0713 30 1 8.5134 -0.2297 -0.2186 31 1 10.5961 1.1056 -0.4099 32 1 10.4340 3.5817 -0.4033 33 1 4.9656 5.2677 0.0793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153245835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:56 Heat of formation + Delta-G solvation = 96.631848 kcal Electronic energy + Delta-G solvation = -20002.914787 eV Core-core repulsion = 16838.287993 eV Total energy + Delta-G solvation = -3164.626795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.48008 -39.00901 -37.25287 -34.05457 -33.02572 -32.61315 -31.63134 -30.23811 -28.97209 -27.02791 -25.55648 -23.96949 -21.58792 -21.11407 -20.86010 -18.99403 -17.68447 -17.49569 -16.08767 -15.89952 -15.68244 -14.61776 -14.37433 -13.93501 -13.76145 -13.60491 -13.24404 -13.17321 -13.07738 -12.76445 -12.30415 -11.95923 -11.84952 -11.11330 -10.90143 -10.68899 -10.58650 -10.41464 -9.88669 -9.65241 -9.14140 -9.11239 -8.93268 -8.84474 -7.90458 -7.18120 -6.89015 -6.07959 -4.33859 1.87260 2.31356 2.93354 2.94957 3.20760 3.21598 3.24103 3.33185 3.90357 4.11531 4.28150 4.66583 4.74231 4.97949 5.00513 5.28387 5.61909 5.63128 5.79380 6.04002 6.10377 6.18442 6.54413 6.58622 6.75992 6.90265 6.92018 7.07933 7.29653 7.62117 7.69133 7.87536 7.97447 8.16311 8.27665 8.54480 8.80587 9.10671 9.30898 10.30446 10.54652 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.005904 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.925894 B = 4741.587605 C = 6245.279185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.003 3.997 3 C -0.178 4.178 4 C 0.008 3.992 5 C 0.556 3.444 6 O -0.397 6.397 7 N -0.654 5.654 8 C 0.373 3.627 9 C -0.354 4.354 10 C -0.036 4.036 11 C -0.305 4.305 12 C 0.272 3.728 13 C -0.426 4.426 14 H 0.082 0.918 15 C 0.058 3.942 16 N -0.657 5.657 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.264 1.264 21 N -0.474 5.474 22 N -0.271 5.271 23 N -0.389 5.389 24 H 0.439 0.561 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.405 0.595 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 -9.531 0.289 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.206 4.206 4 C -0.154 4.154 5 C 0.336 3.664 6 O -0.258 6.258 7 N -0.300 5.300 8 C 0.134 3.866 9 C -0.380 4.380 10 C -0.061 4.061 11 C -0.328 4.328 12 C 0.146 3.854 13 C -0.457 4.457 14 H 0.100 0.900 15 C -0.171 4.171 16 N -0.276 5.276 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.188 1.188 21 N -0.193 5.193 22 N -0.107 5.107 23 N -0.103 5.103 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.179 0.821 29 H 0.239 0.761 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.527 -9.036 0.369 14.651 hybrid contribution 0.119 -0.121 -0.044 0.175 sum -11.408 -9.157 0.325 14.632 Atomic orbital electron populations 1.20303 0.86882 1.03688 1.03109 1.21389 0.95157 0.87403 1.08349 1.21562 0.90683 0.99688 1.08685 1.22561 0.96095 0.89328 1.07434 1.17253 0.81261 0.87597 0.80330 1.91251 1.84557 1.09937 1.40018 1.43196 1.04279 1.09882 1.72687 1.18593 0.83450 0.90755 0.93781 1.20498 0.92374 0.97698 1.27410 1.20555 0.95775 0.93892 0.95827 1.21622 0.98187 0.94030 1.19005 1.18383 0.85741 0.93379 0.87852 1.19575 0.93575 0.90232 1.42293 0.89963 1.26174 0.96164 0.99493 0.95250 1.70313 0.98219 1.35185 1.23854 0.86518 0.78723 0.83854 0.78853 1.19691 1.20328 1.18800 1.68702 1.29765 1.00467 1.20414 1.73566 1.01233 1.15611 1.20280 1.43253 1.03160 1.09160 1.54770 0.71699 0.90536 0.89622 0.91415 0.82096 0.76097 0.89004 0.88604 0.88559 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.44 36.00 0.38 -0.18 16 2 C 0.00 0.03 7.23 -82.21 -0.59 -0.56 16 3 C -0.18 -2.76 10.73 -39.36 -0.42 -3.18 16 4 C 0.01 0.15 7.13 -82.77 -0.59 -0.44 16 5 C 0.56 12.53 7.78 -12.42 -0.10 12.43 16 6 O -0.40 -10.51 12.68 5.30 0.07 -10.44 16 7 N -0.65 -14.38 5.38 -12.31 -0.07 -14.44 16 8 C 0.37 9.59 7.43 -155.05 -1.15 8.44 16 9 C -0.35 -8.34 9.95 -38.89 -0.39 -8.72 16 10 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 11 C -0.31 -7.88 9.83 -38.66 -0.38 -8.26 16 12 C 0.27 7.82 6.55 -85.00 -0.56 7.26 16 13 C -0.43 -11.94 9.14 -37.73 -0.34 -12.28 16 14 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 15 C 0.06 1.56 5.50 -17.35 -0.10 1.46 16 16 N -0.66 -18.52 8.98 55.55 0.50 -18.02 16 17 Si 0.90 19.51 29.56 -169.99 -5.02 14.48 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 21 N -0.47 -13.76 5.73 -10.27 -0.06 -13.82 16 22 N -0.27 -4.16 11.93 33.42 0.40 -3.76 16 23 N -0.39 -4.39 6.83 33.50 0.23 -4.16 16 24 H 0.44 3.06 8.96 -190.43 -1.71 1.35 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.16 2.43 8.06 -52.48 -0.42 2.00 16 29 H 0.40 7.50 8.43 -40.82 -0.34 7.15 16 30 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 33 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -34.58 294.45 -8.72 -43.30 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.56 Total: 7.73 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -4.64 Total: -5.29 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 1.00 Total: -54.21 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.58 -8.72 -43.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153245835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.932 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds