Wall clock time and date at job start Mon Mar 30 2020 01:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35364 * 126.38387 * 2 1 4 4 C 1.41518 * 105.50613 * 180.14445 * 3 2 1 5 5 C 1.47662 * 126.52582 * 179.84462 * 4 3 2 6 6 O 1.21575 * 119.99680 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00383 * 179.71221 * 5 4 3 8 8 C 1.39177 * 120.00397 * 175.13833 * 7 5 4 9 9 C 1.39696 * 119.58115 * 185.27182 * 8 7 5 10 10 C 1.38637 * 119.49723 * 179.97438 * 9 8 7 11 11 C 1.38355 * 118.67069 * 359.97438 * 10 9 8 12 12 C 1.40576 * 119.13316 * 0.02562 * 11 10 9 13 13 C 1.41342 * 119.78531 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99562 * 359.97438 * 13 12 11 15 15 C 1.40022 * 119.99841 * 180.02562 * 13 12 11 16 16 N 1.30745 * 119.99982 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47269 * 89.99903 * 17 15 13 19 19 H 1.48495 * 109.47158 * 209.99698 * 17 15 13 20 20 H 1.48500 * 109.46971 * 329.99749 * 17 15 13 21 21 N 1.31917 * 119.57369 * 4.98753 * 8 7 5 22 22 N 1.31826 * 106.95313 * 359.58504 * 4 3 2 23 23 N 1.28462 * 110.07387 * 0.26003 * 22 4 3 24 24 H 0.97011 * 124.88757 * 179.97438 * 23 22 4 25 25 H 1.09001 * 109.47106 * 270.29719 * 1 2 3 26 26 H 1.09002 * 109.47650 * 30.28947 * 1 2 3 27 27 H 1.08998 * 109.47200 * 150.29639 * 1 2 3 28 28 H 1.08005 * 127.24788 * 359.97438 * 3 2 1 29 29 H 0.97002 * 120.00200 * 355.13332 * 7 5 4 30 30 H 1.08005 * 120.24824 * 359.94549 * 9 8 7 31 31 H 1.08003 * 120.66592 * 180.02562 * 10 9 8 32 32 H 1.08003 * 120.43404 * 179.97438 * 11 10 9 33 33 H 0.96999 * 119.99888 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6322 0.5854 -0.0034 5 6 4.8762 1.3809 -0.0080 6 8 4.8210 2.5954 -0.0096 7 7 6.0727 0.7607 -0.0051 8 6 7.2432 1.5061 -0.1115 9 6 8.4715 0.8495 -0.2189 10 6 9.6364 1.5937 -0.3254 11 6 9.5447 2.9742 -0.3223 12 6 8.2790 3.5758 -0.2113 13 6 8.1693 4.9850 -0.2073 14 1 9.0563 5.5958 -0.2890 15 6 6.9109 5.5889 -0.0965 16 7 5.8374 4.8493 0.0029 17 14 6.7659 7.4512 -0.0919 18 1 6.6016 7.9384 -1.4851 19 1 5.5865 7.8539 0.7156 20 1 7.9943 8.0419 0.4974 21 7 7.1780 2.8237 -0.1152 22 7 3.5420 -0.7297 0.0039 23 7 2.3081 -1.0870 0.0060 24 1 1.9964 -2.0057 0.0108 25 1 -0.3633 0.0053 1.0277 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3633 -0.8926 -0.5092 28 1 2.0055 2.1260 -0.0004 29 1 6.1182 -0.2052 0.0713 30 1 8.5134 -0.2297 -0.2186 31 1 10.5961 1.1056 -0.4099 32 1 10.4340 3.5817 -0.4033 33 1 4.9656 5.2677 0.0793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153245835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:56 Heat of formation + Delta-G solvation = 72.429679 kcal Electronic energy + Delta-G solvation = -20003.964272 eV Core-core repulsion = 16838.287993 eV Total energy + Delta-G solvation = -3165.676279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.61539 -40.84379 -39.13218 -35.95413 -34.87787 -33.62579 -32.85740 -32.20715 -30.87107 -27.93500 -27.47970 -25.55890 -23.46140 -22.72903 -22.15791 -20.68541 -19.50473 -18.62300 -17.90377 -17.50923 -16.83326 -16.44034 -16.26442 -15.61866 -15.54043 -14.98918 -14.75690 -14.62670 -14.04553 -13.99172 -13.68481 -13.62794 -13.05079 -12.87353 -12.71782 -12.54891 -12.31573 -11.84166 -11.76082 -11.53507 -10.95676 -10.87445 -10.32459 -9.90472 -9.88576 -9.14435 -8.83690 -8.03614 -6.41179 0.53531 0.99951 1.18611 1.34258 1.41641 1.54503 1.57144 1.94938 2.28757 2.36172 2.60385 3.03644 3.44920 3.84327 4.05317 4.09350 4.34873 4.51349 4.65992 4.75546 4.82050 4.90372 4.96441 5.04705 5.06669 5.13628 5.29625 5.38681 5.68524 5.83456 5.92446 6.12835 6.20803 6.36040 6.66680 6.80856 6.94949 7.07562 7.57541 8.33164 8.59032 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.005904 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.925894 B = 4741.587605 C = 6245.279185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.036 3.964 3 C -0.212 4.212 4 C -0.025 4.025 5 C 0.550 3.450 6 O -0.446 6.446 7 N -0.646 5.646 8 C 0.348 3.652 9 C -0.346 4.346 10 C -0.033 4.033 11 C -0.326 4.326 12 C 0.236 3.764 13 C -0.465 4.465 14 H 0.088 0.912 15 C 0.010 3.990 16 N -0.694 5.694 17 Si 0.978 3.022 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.255 1.255 21 N -0.509 5.509 22 N -0.273 5.273 23 N -0.364 5.364 24 H 0.462 0.538 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.153 0.847 29 H 0.420 0.580 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 -11.315 0.251 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.240 4.240 4 C -0.185 4.185 5 C 0.332 3.668 6 O -0.310 6.310 7 N -0.294 5.294 8 C 0.109 3.891 9 C -0.371 4.371 10 C -0.057 4.057 11 C -0.349 4.349 12 C 0.111 3.889 13 C -0.496 4.496 14 H 0.106 0.894 15 C -0.216 4.216 16 N -0.313 5.313 17 Si 0.799 3.201 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.178 1.178 21 N -0.229 5.229 22 N -0.111 5.111 23 N -0.082 5.082 24 H 0.311 0.689 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.171 0.829 29 H 0.257 0.743 30 H 0.147 0.853 31 H 0.157 0.843 32 H 0.126 0.874 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.756 -10.905 0.332 16.785 hybrid contribution 0.460 0.171 -0.034 0.492 sum -12.296 -10.734 0.298 16.324 Atomic orbital electron populations 1.20530 0.82897 1.05572 1.04826 1.21909 0.97029 0.85733 1.04432 1.21681 0.90422 1.00803 1.11054 1.21961 0.95021 0.90387 1.11146 1.17854 0.82430 0.87654 0.78879 1.91227 1.85484 1.12139 1.42173 1.43186 1.03534 1.10398 1.72258 1.19114 0.85494 0.90582 0.93862 1.20952 0.91534 0.99620 1.25020 1.21032 0.97685 0.93060 0.93907 1.21831 0.97616 0.95587 1.19896 1.18910 0.87040 0.94316 0.88682 1.19934 0.94611 0.90720 1.44288 0.89357 1.27085 0.95313 1.04853 0.94315 1.70520 0.98523 1.37319 1.24958 0.85283 0.78933 0.76890 0.79023 1.19047 1.19731 1.17844 1.68664 1.30544 1.02145 1.21507 1.73452 1.03264 1.14063 1.20334 1.43359 1.02010 1.10524 1.52275 0.68931 0.88704 0.89027 0.88287 0.82938 0.74320 0.85320 0.84269 0.87393 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.44 71.23 0.74 -0.03 16 2 C 0.04 0.74 7.23 41.40 0.30 1.03 16 3 C -0.21 -6.57 10.73 22.41 0.24 -6.33 16 4 C -0.03 -0.93 7.13 42.44 0.30 -0.62 16 5 C 0.55 25.93 7.78 86.73 0.67 26.60 16 6 O -0.45 -25.18 12.68 -3.95 -0.05 -25.23 16 7 N -0.65 -29.08 5.38 -311.14 -1.67 -30.76 16 8 C 0.35 18.29 7.43 133.28 0.99 19.28 16 9 C -0.35 -15.89 9.95 22.72 0.23 -15.67 16 10 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 11 C -0.33 -17.05 9.83 22.87 0.22 -16.82 16 12 C 0.24 14.14 6.55 40.20 0.26 14.40 16 13 C -0.46 -27.17 9.14 23.47 0.21 -26.96 16 14 H 0.09 4.80 7.85 -2.91 -0.02 4.78 16 15 C 0.01 0.54 5.50 85.29 0.47 1.00 16 16 N -0.69 -41.29 8.98 21.84 0.20 -41.09 16 17 Si 0.98 41.53 29.56 68.60 2.03 43.56 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 21 N -0.51 -30.83 5.73 -186.40 -1.07 -31.90 16 22 N -0.27 -8.07 11.93 -48.19 -0.57 -8.64 16 23 N -0.36 -7.18 6.83 -47.93 -0.33 -7.51 16 24 H 0.46 4.60 8.96 -219.98 -1.97 2.62 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.15 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.42 15.52 8.43 -92.71 -0.78 14.74 16 30 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.14 5.05 8.06 -2.91 -0.02 5.02 16 32 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 33 H 0.27 15.14 8.29 -92.71 -0.77 14.37 16 Total: -1.00 -80.71 294.45 1.83 -78.88 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -1.58 Total: 28.07 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 4.88 Total: -5.37 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -3.45 Total: -119.90 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -80.71 1.83 -78.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153245835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.308 kcal (2) G-P(sol) polarization free energy of solvation -80.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds