Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36559 * 127.12447 * 2 1 4 4 N 1.30379 * 107.32242 * 179.86959 * 3 2 1 5 5 N 1.28533 * 110.02480 * 0.40170 * 4 3 2 6 6 C 1.31190 * 109.83195 * 359.74217 * 5 4 3 7 7 N 1.38821 * 126.46732 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00254 * 0.02562 * 7 6 5 9 9 O 1.21626 * 119.99823 * 359.97438 * 8 7 6 10 10 C 1.47354 * 120.00397 * 179.97438 * 8 7 6 11 11 C 1.39272 * 120.28518 * 354.96694 * 10 8 7 12 12 C 1.38183 * 120.09027 * 179.97438 * 11 10 8 13 13 C 1.38851 * 120.68326 * 0.02562 * 12 11 10 14 14 C 1.37579 * 120.57894 * 0.02562 * 13 12 11 15 15 C 1.40725 * 119.88259 * 359.69498 * 14 13 12 16 16 C 1.40854 * 120.33095 * 180.29996 * 15 14 13 17 17 H 1.08006 * 120.00000 * 141.52722 * 16 15 14 18 18 C 1.40281 * 120.00116 * 321.52501 * 16 15 14 19 19 N 1.30628 * 119.99773 * 174.39610 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 354.39821 * 18 16 15 21 21 H 1.48500 * 109.46991 * 89.37379 * 20 18 16 22 22 H 1.48502 * 109.46991 * 209.37331 * 20 18 16 23 23 H 1.48501 * 109.47010 * 329.37447 * 20 18 16 24 24 H 1.08993 * 109.47627 * 269.68885 * 1 2 3 25 25 H 1.08999 * 109.47196 * 149.67883 * 1 2 3 26 26 H 1.09004 * 109.47094 * 29.68617 * 1 2 3 27 27 H 1.08006 * 126.34182 * 359.97438 * 3 2 1 28 28 H 0.97000 * 119.99885 * 180.02562 * 7 6 5 29 29 H 1.08002 * 119.95171 * 0.02562 * 11 10 8 30 30 H 1.07996 * 119.66110 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.71037 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.06038 * 179.97438 * 14 13 12 33 33 H 0.97001 * 119.99128 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2892 1.0888 0.0000 4 7 3.5159 0.6471 0.0028 5 7 3.5209 -0.6382 -0.0039 6 6 2.2885 -1.0881 -0.0058 7 7 1.8963 -2.4197 -0.0131 8 6 2.8255 -3.3959 -0.0185 9 8 4.0077 -3.1102 -0.0175 10 6 2.4092 -4.8094 -0.0257 11 6 1.0616 -5.1453 0.0785 12 6 0.6757 -6.4721 0.0708 13 6 1.6200 -7.4840 -0.0397 14 6 2.9586 -7.1839 -0.1432 15 6 3.3780 -5.8406 -0.1438 16 6 4.7456 -5.5224 -0.2557 17 1 5.0557 -4.6716 -0.8444 18 6 5.7048 -6.3105 0.3976 19 7 6.9768 -6.0831 0.2065 20 14 5.1630 -7.6850 1.5406 21 1 5.0030 -8.9405 0.7639 22 1 6.1880 -7.8834 2.5967 23 1 3.8673 -7.3237 2.1699 24 1 -0.3634 -0.0056 1.0275 25 1 -0.3633 -0.8871 -0.5188 26 1 -0.3633 0.8928 -0.5090 27 1 1.9818 2.1242 -0.0004 28 1 0.9535 -2.6476 -0.0143 29 1 0.3172 -4.3675 0.1647 30 1 -0.3712 -6.7246 0.1517 31 1 1.3009 -8.5158 -0.0437 32 1 3.6860 -7.9776 -0.2284 33 1 7.6400 -6.6283 0.6580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153963877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = 90.043276 kcal Electronic energy + Delta-G solvation = -20220.676935 eV Core-core repulsion = 17055.764439 eV Total energy + Delta-G solvation = -3164.912496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.68112 -39.23895 -37.18154 -35.14902 -34.16661 -33.52062 -30.59532 -30.55016 -28.92954 -27.61234 -25.55654 -23.33064 -22.30119 -21.83872 -20.68182 -19.43713 -18.15518 -17.40168 -16.71645 -16.32931 -15.90638 -15.40975 -14.67061 -14.29542 -14.17062 -14.10871 -13.63002 -13.34955 -13.15880 -12.76733 -12.63615 -12.11075 -11.67673 -11.20566 -11.01321 -10.83254 -10.64874 -10.51979 -10.18953 -10.00835 -9.93901 -9.85858 -9.33292 -8.68763 -8.09330 -7.91957 -7.68954 -6.94110 -4.55295 1.80873 2.16790 2.21132 2.50563 3.05089 3.14800 3.24202 3.26832 3.44736 3.90821 3.95554 4.39342 4.52600 4.71580 4.82122 5.06244 5.26745 5.26889 5.55299 5.62231 5.83607 5.92004 5.99764 6.23647 6.37621 6.59484 6.68001 6.98744 7.09504 7.18701 7.25290 7.44456 7.59288 7.85523 7.91748 8.39730 8.50843 8.74287 9.02797 9.21053 10.03575 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.006110 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.841946 B = 4581.806427 C = 5646.162889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.508 5.508 3 C 0.130 3.870 4 N -0.284 5.284 5 N -0.276 5.276 6 C 0.421 3.579 7 N -0.647 5.647 8 C 0.554 3.446 9 O -0.454 6.454 10 C -0.247 4.247 11 C -0.043 4.043 12 C -0.251 4.251 13 C -0.065 4.065 14 C -0.219 4.219 15 C 0.117 3.883 16 C -0.391 4.391 17 H 0.117 0.883 18 C 0.078 3.922 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.242 1.242 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.218 0.782 28 H 0.405 0.595 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 6.170 0.774 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.209 5.209 3 C -0.157 4.157 4 N -0.123 5.123 5 N -0.123 5.123 6 C 0.066 3.934 7 N -0.303 5.303 8 C 0.346 3.654 9 O -0.321 6.321 10 C -0.252 4.252 11 C -0.061 4.061 12 C -0.270 4.270 13 C -0.083 4.083 14 C -0.238 4.238 15 C 0.112 3.888 16 C -0.417 4.417 17 H 0.135 0.865 18 C -0.144 4.144 19 N -0.408 5.408 20 Si 0.736 3.264 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.165 1.165 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.234 0.766 28 H 0.242 0.758 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.577 6.265 0.800 14.073 hybrid contribution -2.365 -0.618 0.496 2.494 sum -14.941 5.647 1.295 16.025 Atomic orbital electron populations 1.21996 0.76019 1.04906 1.03808 1.46375 1.08357 1.06156 1.60055 1.26193 0.87120 0.93669 1.08755 1.74185 1.18028 1.03678 1.16365 1.75167 1.12945 1.01455 1.22689 1.21605 0.87102 0.83182 1.01549 1.43175 1.11524 0.99509 1.76114 1.18607 0.85035 0.84636 0.77118 1.90942 1.15553 1.81844 1.43770 1.19130 0.93747 0.89981 1.22329 1.20727 0.93682 0.95613 0.96128 1.20269 0.97663 0.92547 1.16528 1.20759 0.93376 0.97544 0.96655 1.21194 0.95164 0.96174 1.11244 1.17484 0.93300 0.89860 0.88198 1.20038 0.88526 1.10585 1.22583 0.86539 1.26353 0.94405 0.96958 0.96643 1.69550 1.01860 1.35002 1.34361 0.86363 0.80022 0.80232 0.79801 1.19300 1.21488 1.16518 0.90249 0.89793 0.88874 0.76566 0.75763 0.88979 0.88341 0.88339 0.87463 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 11.10 59.85 0.66 1.16 16 2 N -0.51 -6.52 3.20 -126.10 -0.40 -6.93 16 3 C 0.13 1.73 12.79 -89.07 -1.14 0.59 16 4 N -0.28 -5.48 12.18 29.87 0.36 -5.11 16 5 N -0.28 -6.23 10.45 30.36 0.32 -5.91 16 6 C 0.42 7.73 8.54 -318.55 -2.72 5.01 16 7 N -0.65 -11.53 5.35 -13.43 -0.07 -11.60 16 8 C 0.55 12.74 7.68 -12.55 -0.10 12.64 16 9 O -0.45 -12.63 12.40 5.25 0.07 -12.56 16 10 C -0.25 -5.58 5.92 -104.37 -0.62 -6.20 16 11 C -0.04 -0.79 9.52 -39.22 -0.37 -1.16 16 12 C -0.25 -4.57 10.03 -39.37 -0.39 -4.97 16 13 C -0.06 -1.27 10.01 -39.60 -0.40 -1.67 16 14 C -0.22 -4.96 6.93 -38.88 -0.27 -5.23 16 15 C 0.12 2.92 5.04 -106.54 -0.54 2.38 16 16 C -0.39 -10.89 8.08 -37.83 -0.31 -11.19 16 17 H 0.12 3.63 6.37 -52.48 -0.33 3.29 16 18 C 0.08 2.07 5.51 -17.30 -0.10 1.98 16 19 N -0.79 -21.50 13.92 55.56 0.77 -20.72 16 20 Si 0.91 20.49 24.48 -169.99 -4.16 16.33 16 21 H -0.27 -5.65 6.71 56.52 0.38 -5.27 16 22 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.24 -5.54 6.67 56.52 0.38 -5.16 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.47 7.65 -51.93 -0.40 0.07 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.22 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.41 5.39 6.21 -40.82 -0.25 5.13 16 29 H 0.09 1.29 6.43 -52.49 -0.34 0.96 16 30 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.11 2.40 4.88 -52.49 -0.26 2.14 16 33 H 0.29 7.09 8.29 -40.82 -0.34 6.75 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -35.47 283.89 -8.00 -43.46 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.87 Total: 5.42 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -6.28 Total: -6.65 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.98 Total: -50.28 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.16 Total: 16.33 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -35.47 -8.00 -43.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153963877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.506 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds