Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36559 * 127.12447 * 2 1 4 4 N 1.30379 * 107.32242 * 179.86959 * 3 2 1 5 5 N 1.28533 * 110.02480 * 0.40170 * 4 3 2 6 6 C 1.31190 * 109.83195 * 359.74217 * 5 4 3 7 7 N 1.38821 * 126.46732 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00254 * 0.02562 * 7 6 5 9 9 O 1.21626 * 119.99823 * 359.97438 * 8 7 6 10 10 C 1.47354 * 120.00397 * 179.97438 * 8 7 6 11 11 C 1.39272 * 120.28518 * 354.96694 * 10 8 7 12 12 C 1.38183 * 120.09027 * 179.97438 * 11 10 8 13 13 C 1.38851 * 120.68326 * 0.02562 * 12 11 10 14 14 C 1.37579 * 120.57894 * 0.02562 * 13 12 11 15 15 C 1.40725 * 119.88259 * 359.69498 * 14 13 12 16 16 C 1.40854 * 120.33095 * 180.29996 * 15 14 13 17 17 H 1.08006 * 120.00000 * 141.52722 * 16 15 14 18 18 C 1.40281 * 120.00116 * 321.52501 * 16 15 14 19 19 N 1.30628 * 119.99773 * 174.39610 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 354.39821 * 18 16 15 21 21 H 1.48500 * 109.46991 * 89.37379 * 20 18 16 22 22 H 1.48502 * 109.46991 * 209.37331 * 20 18 16 23 23 H 1.48501 * 109.47010 * 329.37447 * 20 18 16 24 24 H 1.08993 * 109.47627 * 269.68885 * 1 2 3 25 25 H 1.08999 * 109.47196 * 149.67883 * 1 2 3 26 26 H 1.09004 * 109.47094 * 29.68617 * 1 2 3 27 27 H 1.08006 * 126.34182 * 359.97438 * 3 2 1 28 28 H 0.97000 * 119.99885 * 180.02562 * 7 6 5 29 29 H 1.08002 * 119.95171 * 0.02562 * 11 10 8 30 30 H 1.07996 * 119.66110 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.71037 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.06038 * 179.97438 * 14 13 12 33 33 H 0.97001 * 119.99128 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2892 1.0888 0.0000 4 7 3.5159 0.6471 0.0028 5 7 3.5209 -0.6382 -0.0039 6 6 2.2885 -1.0881 -0.0058 7 7 1.8963 -2.4197 -0.0131 8 6 2.8255 -3.3959 -0.0185 9 8 4.0077 -3.1102 -0.0175 10 6 2.4092 -4.8094 -0.0257 11 6 1.0616 -5.1453 0.0785 12 6 0.6757 -6.4721 0.0708 13 6 1.6200 -7.4840 -0.0397 14 6 2.9586 -7.1839 -0.1432 15 6 3.3780 -5.8406 -0.1438 16 6 4.7456 -5.5224 -0.2557 17 1 5.0557 -4.6716 -0.8444 18 6 5.7048 -6.3105 0.3976 19 7 6.9768 -6.0831 0.2065 20 14 5.1630 -7.6850 1.5406 21 1 5.0030 -8.9405 0.7639 22 1 6.1880 -7.8834 2.5967 23 1 3.8673 -7.3237 2.1699 24 1 -0.3634 -0.0056 1.0275 25 1 -0.3633 -0.8871 -0.5188 26 1 -0.3633 0.8928 -0.5090 27 1 1.9818 2.1242 -0.0004 28 1 0.9535 -2.6476 -0.0143 29 1 0.3172 -4.3675 0.1647 30 1 -0.3712 -6.7246 0.1517 31 1 1.3009 -8.5158 -0.0437 32 1 3.6860 -7.9776 -0.2284 33 1 7.6400 -6.6283 0.6580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153963877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = 65.839293 kcal Electronic energy + Delta-G solvation = -20221.726499 eV Core-core repulsion = 17055.764439 eV Total energy + Delta-G solvation = -3165.962060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.93612 -40.95619 -38.87199 -36.50059 -35.66924 -35.21594 -32.34351 -32.16901 -30.33719 -28.39198 -27.33344 -24.96582 -23.61433 -23.33191 -22.20831 -21.01348 -19.69498 -18.98554 -18.23221 -17.50827 -17.22858 -17.02878 -16.09576 -15.84169 -15.74188 -15.62933 -15.26257 -14.59331 -14.38530 -14.24815 -13.85275 -13.58218 -13.33204 -12.71053 -12.57988 -12.52374 -12.22693 -12.18745 -11.97224 -11.62033 -11.21816 -11.09773 -11.04405 -10.51760 -9.67834 -9.47658 -9.39238 -8.82346 -6.51731 0.19989 0.82175 0.89660 1.03251 1.23235 1.37987 1.46549 1.89559 2.09598 2.27821 2.31041 2.70218 3.47607 3.60007 3.88513 4.01020 4.17079 4.35224 4.41526 4.42000 4.55542 4.68117 4.71615 4.81150 4.87026 4.97537 5.27884 5.35947 5.41717 5.63635 5.81513 5.91651 6.05815 6.21724 6.35239 6.45298 6.70777 6.76049 7.37449 7.89631 8.23904 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.006110 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.841946 B = 4581.806427 C = 5646.162889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.491 5.491 3 C 0.171 3.829 4 N -0.349 5.349 5 N -0.351 5.351 6 C 0.398 3.602 7 N -0.625 5.625 8 C 0.550 3.450 9 O -0.515 6.515 10 C -0.259 4.259 11 C -0.038 4.038 12 C -0.221 4.221 13 C -0.058 4.058 14 C -0.241 4.241 15 C 0.103 3.897 16 C -0.444 4.444 17 H 0.056 0.944 18 C 0.030 3.970 19 N -0.853 5.853 20 Si 0.973 3.027 21 H -0.242 1.242 22 H -0.284 1.284 23 H -0.244 1.244 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.279 0.721 28 H 0.429 0.571 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.064 5.911 1.626 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.190 5.190 3 C -0.118 4.118 4 N -0.187 5.187 5 N -0.197 5.197 6 C 0.041 3.959 7 N -0.283 5.283 8 C 0.343 3.657 9 O -0.387 6.387 10 C -0.264 4.264 11 C -0.056 4.056 12 C -0.239 4.239 13 C -0.076 4.076 14 C -0.260 4.260 15 C 0.098 3.902 16 C -0.473 4.473 17 H 0.074 0.926 18 C -0.183 4.183 19 N -0.480 5.480 20 Si 0.795 3.205 21 H -0.166 1.166 22 H -0.211 1.211 23 H -0.168 1.168 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.149 0.851 27 H 0.294 0.706 28 H 0.270 0.730 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.122 0.878 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.399 6.028 1.635 20.380 hybrid contribution -0.815 -0.284 0.165 0.879 sum -20.215 5.744 1.800 21.092 Atomic orbital electron populations 1.22602 0.71665 1.07555 1.06049 1.46644 1.10516 1.03875 1.57984 1.27383 0.85567 0.95715 1.03164 1.74054 1.21669 1.02733 1.20238 1.74988 1.16560 1.03465 1.24648 1.21453 0.87556 0.84126 1.02793 1.42497 1.11729 0.98916 1.75120 1.18862 0.84834 0.85907 0.76132 1.90949 1.18501 1.82954 1.46258 1.19484 0.95650 0.89383 1.21915 1.21248 0.92406 0.97877 0.94082 1.21002 1.00008 0.91599 1.11340 1.21325 0.91888 1.00440 0.93931 1.21282 0.97141 0.94766 1.12830 1.17761 0.92551 0.92072 0.87767 1.19742 0.90964 1.10415 1.26225 0.92591 1.27185 0.94124 0.99257 0.97759 1.69635 1.03026 1.37735 1.37590 0.85429 0.79138 0.78049 0.77877 1.16627 1.21084 1.16768 0.88120 0.88459 0.85121 0.70569 0.72992 0.83567 0.83013 0.84111 0.87750 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 11.10 127.77 1.42 1.88 16 2 N -0.49 -11.09 3.20 -552.88 -1.77 -12.87 16 3 C 0.17 4.08 12.79 179.81 2.30 6.38 16 4 N -0.35 -13.76 12.18 -59.40 -0.72 -14.49 16 5 N -0.35 -16.69 10.45 -57.86 -0.60 -17.29 16 6 C 0.40 14.56 8.54 260.00 2.22 16.78 16 7 N -0.62 -21.72 5.35 -314.64 -1.68 -23.41 16 8 C 0.55 26.28 7.68 86.64 0.67 26.94 16 9 O -0.51 -31.46 12.40 -4.11 -0.05 -31.51 16 10 C -0.26 -11.61 5.92 -19.70 -0.12 -11.73 16 11 C -0.04 -1.20 9.52 22.51 0.21 -0.99 16 12 C -0.22 -6.46 10.03 22.40 0.22 -6.24 16 13 C -0.06 -1.95 10.01 22.26 0.22 -1.73 16 14 C -0.24 -10.60 6.93 22.72 0.16 -10.44 16 15 C 0.10 5.30 5.04 -21.10 -0.11 5.19 16 16 C -0.44 -27.25 8.08 23.41 0.19 -27.06 16 17 H 0.06 3.99 6.37 -2.91 -0.02 3.97 16 18 C 0.03 1.74 5.51 85.37 0.47 2.21 16 19 N -0.85 -51.88 13.92 21.88 0.30 -51.57 16 20 Si 0.97 44.09 24.48 68.60 1.68 45.77 16 21 H -0.24 -9.78 6.71 99.48 0.67 -9.11 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.24 -10.89 6.67 99.48 0.66 -10.23 16 24 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.10 0.53 7.65 -2.39 -0.02 0.52 16 26 H 0.13 0.11 8.14 -2.38 -0.02 0.09 16 27 H 0.28 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.43 9.83 6.21 -92.71 -0.58 9.25 16 29 H 0.15 3.04 6.43 -2.91 -0.02 3.02 16 30 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.10 4.59 4.88 -2.91 -0.01 4.57 16 33 H 0.29 15.91 8.29 -92.71 -0.77 15.14 16 Total: -1.00 -94.40 283.89 5.52 -88.87 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.51 Total: 15.29 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 7.86 Total: 1.20 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -4.48 Total: -119.62 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.05 Total: -31.51 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.68 Total: 45.77 kcal Total: -94.40 5.52 -88.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153963877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.712 kcal (2) G-P(sol) polarization free energy of solvation -94.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds