Wall clock time and date at job start Mon Mar 30 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48499 * 109.46979 * 239.99498 * 3 2 1 5 5 H 1.48501 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46989 * 119.99769 * 3 2 1 7 7 C 1.40055 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00599 * 186.87215 * 7 2 1 9 9 C 1.41282 * 119.99571 * 6.87582 * 7 2 1 10 10 C 1.40725 * 120.15687 * 180.69525 * 9 7 2 11 11 N 1.31901 * 119.92853 * 179.97438 * 10 9 7 12 12 C 1.32152 * 120.27230 * 359.73022 * 11 10 9 13 13 C 1.39920 * 120.32238 * 0.52611 * 12 11 10 14 14 N 1.38826 * 119.96909 * 179.74899 * 13 12 11 15 15 C 1.46974 * 111.00170 * 52.68597 * 14 13 12 16 16 C 1.53361 * 109.77240 * 53.28132 * 15 14 13 17 17 N 1.46559 * 108.33986 * 50.18256 * 16 15 14 18 18 N 1.28031 * 128.76823 * 163.16294 * 17 16 15 19 19 N 1.28958 * 110.08356 * 180.26732 * 18 17 16 20 20 C 1.34122 * 108.96451 * 359.92862 * 19 18 17 21 21 C 1.34286 * 106.21871 * 359.96012 * 20 19 18 22 22 C 1.47432 * 111.00257 * 176.74229 * 14 13 12 23 23 N 1.32267 * 120.05971 * 359.47301 * 13 12 11 24 24 H 0.96999 * 119.99376 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.03150 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.84388 * 180.25049 * 12 11 10 27 27 H 1.09004 * 109.41161 * 173.36239 * 15 14 13 28 28 H 1.09004 * 109.40729 * 293.20805 * 15 14 13 29 29 H 1.09005 * 109.70700 * 169.81081 * 16 15 14 30 30 H 1.09001 * 109.71101 * 290.43138 * 16 15 14 31 31 H 1.08004 * 126.89156 * 180.02562 * 20 19 18 32 32 H 1.09002 * 109.75451 * 45.22964 * 22 14 13 33 33 H 1.08995 * 109.76025 * 165.92702 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6962 -1.2124 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6963 1.2126 7 6 2.0076 -1.2129 0.0005 8 1 3.0818 -1.2163 0.1125 9 6 1.3087 -2.4321 -0.1454 10 6 2.0074 -3.6536 -0.1307 11 7 1.3503 -4.7891 -0.2668 12 6 0.0368 -4.7856 -0.4118 13 6 -0.6682 -3.5772 -0.4334 14 7 -2.0475 -3.5817 -0.5913 15 6 -2.6873 -4.4671 0.3919 16 6 -2.2268 -4.0912 1.8056 17 7 -2.3968 -2.6457 1.9769 18 7 -2.4190 -1.9639 3.0603 19 7 -2.5955 -0.7145 2.7938 20 6 -2.6937 -0.5620 1.4649 21 6 -2.5660 -1.7897 0.9360 22 6 -2.5934 -2.2147 -0.5081 23 7 -0.0224 -2.4308 -0.2979 24 1 -0.4849 0.8401 -0.0004 25 1 3.0804 -3.6611 -0.0080 26 1 -0.4947 -5.7197 -0.5186 27 1 -3.7701 -4.3619 0.3236 28 1 -2.4100 -5.5004 0.1833 29 1 -2.8315 -4.6206 2.5421 30 1 -1.1770 -4.3556 1.9328 31 1 -2.8441 0.3629 0.9279 32 1 -1.9814 -1.5368 -1.1032 33 1 -3.6191 -2.2044 -0.8765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154823030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:19 Heat of formation + Delta-G solvation = 169.158757 kcal Electronic energy + Delta-G solvation = -21658.793766 eV Core-core repulsion = 18529.604725 eV Total energy + Delta-G solvation = -3129.189041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.79770 -39.69129 -37.41277 -34.16223 -33.69146 -31.83039 -31.25263 -29.84867 -28.91412 -26.35919 -24.93778 -23.88952 -22.34535 -21.87103 -21.42274 -19.23680 -17.74921 -16.90916 -16.37012 -16.15084 -15.47009 -15.10580 -14.94099 -14.69844 -14.02285 -13.73456 -13.32062 -13.05797 -12.80716 -12.41107 -12.00107 -11.67479 -11.53473 -11.41674 -11.37222 -11.05710 -10.85423 -10.55305 -10.35507 -9.99410 -9.69494 -9.59792 -9.38923 -8.67559 -8.35025 -7.60825 -7.43522 -6.67587 -4.81728 2.29507 2.32413 2.78733 2.88366 2.98045 2.99026 3.10028 3.32152 3.77433 4.04009 4.46046 4.57718 4.90086 5.01018 5.10770 5.45778 5.50896 5.55203 5.64727 5.82434 5.90437 5.93610 6.04268 6.16095 6.26877 6.43769 6.66472 6.78444 6.88571 6.90560 7.17651 7.24652 7.27465 7.65834 7.92903 8.31683 8.55470 9.12674 9.17602 9.65445 9.98679 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.010460 C = 0.007394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.040581 B = 2676.172557 C = 3785.912870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.068 3.932 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.404 4.404 8 H 0.090 0.910 9 C 0.225 3.775 10 C -0.083 4.083 11 N -0.414 5.414 12 C -0.134 4.134 13 C 0.271 3.729 14 N -0.471 5.471 15 C 0.051 3.949 16 C 0.084 3.916 17 N -0.288 5.288 18 N -0.101 5.101 19 N -0.283 5.283 20 C -0.025 4.025 21 C 0.006 3.994 22 C 0.135 3.865 23 N -0.475 5.475 24 H 0.278 0.722 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.178 0.822 32 H 0.131 0.869 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 -2.282 -1.322 7.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.435 4.435 8 H 0.108 0.892 9 C 0.098 3.902 10 C -0.253 4.253 11 N -0.125 5.125 12 C -0.294 4.294 13 C 0.029 3.971 14 N -0.188 5.188 15 C -0.078 4.078 16 C -0.040 4.040 17 N -0.083 5.083 18 N -0.080 5.080 19 N -0.149 5.149 20 C -0.181 4.181 21 C -0.127 4.127 22 C 0.006 3.994 23 N -0.197 5.197 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.143 0.857 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.195 0.805 32 H 0.149 0.851 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.839 -2.416 -0.225 7.256 hybrid contribution 0.707 0.959 -0.460 1.277 sum -6.132 -1.457 -0.684 6.339 Atomic orbital electron populations 1.70027 1.07224 1.28535 1.25670 1.26079 0.95100 1.01317 0.93498 0.86284 0.80183 0.79940 0.80008 1.18783 1.19911 1.18865 1.19635 0.95112 0.89294 1.39507 0.89211 1.19164 0.88058 0.93357 0.89600 1.23049 0.99423 0.89035 1.13837 1.67604 1.08114 1.30583 1.06246 1.21986 0.90918 0.95578 1.20910 1.20724 0.89164 0.92688 0.94478 1.59528 1.03053 1.10479 1.45762 1.22643 0.99807 0.99094 0.86209 1.22774 1.04769 0.75626 1.00786 1.46978 1.47424 1.08962 1.04982 1.77954 1.20913 0.99051 1.10097 1.75157 1.17312 1.07461 1.15013 1.22557 1.07534 0.97353 0.90685 1.22313 1.05999 0.90978 0.93398 1.20853 1.00369 0.89303 0.88912 1.69381 1.08727 1.22865 1.18699 0.91093 0.85055 0.85690 0.89043 0.87144 0.87900 0.88400 0.80496 0.85113 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.09 10.80 55.55 0.60 -15.49 16 2 C 0.07 1.58 5.48 -17.34 -0.10 1.49 16 3 Si 0.91 17.56 29.57 -169.99 -5.03 12.53 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.40 -9.96 9.15 -37.74 -0.35 -10.31 16 8 H 0.09 2.07 7.86 -52.49 -0.41 1.66 16 9 C 0.22 5.71 6.54 -84.83 -0.55 5.16 16 10 C -0.08 -2.01 10.97 -16.58 -0.18 -2.19 16 11 N -0.41 -9.76 10.47 -12.11 -0.13 -9.89 16 12 C -0.13 -2.88 9.83 -16.78 -0.17 -3.04 16 13 C 0.27 5.81 4.94 -155.01 -0.77 5.05 16 14 N -0.47 -8.20 5.02 -173.76 -0.87 -9.07 16 15 C 0.05 0.69 5.53 -3.60 -0.02 0.67 16 16 C 0.08 1.31 6.69 -3.82 -0.03 1.29 16 17 N -0.29 -5.53 3.76 -57.00 -0.21 -5.74 16 18 N -0.10 -2.18 13.26 60.35 0.80 -1.38 16 19 N -0.28 -6.14 12.43 30.10 0.37 -5.76 16 20 C -0.02 -0.48 11.36 -17.95 -0.20 -0.69 16 21 C 0.01 0.11 5.68 -82.29 -0.47 -0.36 16 22 C 0.13 2.31 5.84 -4.75 -0.03 2.28 16 23 N -0.47 -11.46 5.63 -10.14 -0.06 -11.52 16 24 H 0.28 5.92 8.29 -40.82 -0.34 5.58 16 25 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 26 H 0.13 2.33 7.07 -52.48 -0.37 1.96 16 27 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 28 H 0.11 1.27 7.03 -51.93 -0.36 0.90 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.78 7.02 -51.93 -0.36 1.42 16 31 H 0.18 3.00 8.06 -52.48 -0.42 2.57 16 32 H 0.13 2.58 7.22 -51.93 -0.37 2.20 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 279.23 15.07 4.21 4.21 Total: -1.00 -29.61 279.23 -6.30 -35.91 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.13 Total: 6.85 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.85 Total: -0.66 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.50 Total: -58.85 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.61 -6.30 -35.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154823030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.073 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds