Wall clock time and date at job start Mon Mar 30 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48499 * 109.46979 * 239.99498 * 3 2 1 5 5 H 1.48501 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46989 * 119.99769 * 3 2 1 7 7 C 1.40055 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00599 * 186.87215 * 7 2 1 9 9 C 1.41282 * 119.99571 * 6.87582 * 7 2 1 10 10 C 1.40725 * 120.15687 * 180.69525 * 9 7 2 11 11 N 1.31901 * 119.92853 * 179.97438 * 10 9 7 12 12 C 1.32152 * 120.27230 * 359.73022 * 11 10 9 13 13 C 1.39920 * 120.32238 * 0.52611 * 12 11 10 14 14 N 1.38826 * 119.96909 * 179.74899 * 13 12 11 15 15 C 1.46974 * 111.00170 * 52.68597 * 14 13 12 16 16 C 1.53361 * 109.77240 * 53.28132 * 15 14 13 17 17 N 1.46559 * 108.33986 * 50.18256 * 16 15 14 18 18 N 1.28031 * 128.76823 * 163.16294 * 17 16 15 19 19 N 1.28958 * 110.08356 * 180.26732 * 18 17 16 20 20 C 1.34122 * 108.96451 * 359.92862 * 19 18 17 21 21 C 1.34286 * 106.21871 * 359.96012 * 20 19 18 22 22 C 1.47432 * 111.00257 * 176.74229 * 14 13 12 23 23 N 1.32267 * 120.05971 * 359.47301 * 13 12 11 24 24 H 0.96999 * 119.99376 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.03150 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.84388 * 180.25049 * 12 11 10 27 27 H 1.09004 * 109.41161 * 173.36239 * 15 14 13 28 28 H 1.09004 * 109.40729 * 293.20805 * 15 14 13 29 29 H 1.09005 * 109.70700 * 169.81081 * 16 15 14 30 30 H 1.09001 * 109.71101 * 290.43138 * 16 15 14 31 31 H 1.08004 * 126.89156 * 180.02562 * 20 19 18 32 32 H 1.09002 * 109.75451 * 45.22964 * 22 14 13 33 33 H 1.08995 * 109.76025 * 165.92702 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6962 -1.2124 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6963 1.2126 7 6 2.0076 -1.2129 0.0005 8 1 3.0818 -1.2163 0.1125 9 6 1.3087 -2.4321 -0.1454 10 6 2.0074 -3.6536 -0.1307 11 7 1.3503 -4.7891 -0.2668 12 6 0.0368 -4.7856 -0.4118 13 6 -0.6682 -3.5772 -0.4334 14 7 -2.0475 -3.5817 -0.5913 15 6 -2.6873 -4.4671 0.3919 16 6 -2.2268 -4.0912 1.8056 17 7 -2.3968 -2.6457 1.9769 18 7 -2.4190 -1.9639 3.0603 19 7 -2.5955 -0.7145 2.7938 20 6 -2.6937 -0.5620 1.4649 21 6 -2.5660 -1.7897 0.9360 22 6 -2.5934 -2.2147 -0.5081 23 7 -0.0224 -2.4308 -0.2979 24 1 -0.4849 0.8401 -0.0004 25 1 3.0804 -3.6611 -0.0080 26 1 -0.4947 -5.7197 -0.5186 27 1 -3.7701 -4.3619 0.3236 28 1 -2.4100 -5.5004 0.1833 29 1 -2.8315 -4.6206 2.5421 30 1 -1.1770 -4.3556 1.9328 31 1 -2.8441 0.3629 0.9279 32 1 -1.9814 -1.5368 -1.1032 33 1 -3.6191 -2.2044 -0.8765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154823030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:19 Heat of formation + Delta-G solvation = 147.842799 kcal Electronic energy + Delta-G solvation = -21659.718095 eV Core-core repulsion = 18529.604725 eV Total energy + Delta-G solvation = -3130.113370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.28410 -41.31748 -38.93677 -35.91433 -35.15095 -33.55500 -32.76058 -31.40966 -30.41355 -28.06408 -26.47323 -25.24695 -24.02881 -23.40390 -23.04180 -20.71945 -19.46945 -18.35220 -17.93971 -17.63999 -17.13407 -16.76718 -16.50595 -16.16815 -15.44648 -15.09324 -14.89507 -14.59244 -14.30668 -13.81419 -13.50655 -13.29222 -13.09894 -13.00005 -12.77547 -12.54538 -12.44434 -12.09433 -11.87877 -11.72611 -11.38332 -11.30756 -10.87469 -10.34998 -9.84943 -9.36346 -9.07159 -8.40576 -6.63575 0.60965 0.79876 1.10196 1.39742 1.48278 1.49265 1.52091 1.79719 2.17253 2.62398 2.80594 3.28802 3.68395 3.71512 3.75965 3.87391 4.08600 4.15986 4.18834 4.38895 4.53448 4.55250 4.63926 4.67572 4.83372 4.88026 5.02722 5.12737 5.23011 5.40102 5.59365 5.68559 5.81258 5.99293 6.16127 6.54651 6.77650 7.34798 7.64131 7.88265 8.27654 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.010460 C = 0.007394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.040581 B = 2676.172557 C = 3785.912870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.030 3.970 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.436 4.436 8 H 0.091 0.909 9 C 0.198 3.802 10 C -0.118 4.118 11 N -0.424 5.424 12 C -0.132 4.132 13 C 0.272 3.728 14 N -0.466 5.466 15 C 0.053 3.947 16 C 0.077 3.923 17 N -0.287 5.287 18 N -0.131 5.131 19 N -0.311 5.311 20 C -0.033 4.033 21 C 0.008 3.992 22 C 0.139 3.861 23 N -0.489 5.489 24 H 0.284 0.716 25 H 0.135 0.865 26 H 0.159 0.841 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.068 0.932 31 H 0.195 0.805 32 H 0.105 0.895 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 -2.765 -2.044 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.109 0.891 9 C 0.072 3.928 10 C -0.286 4.286 11 N -0.136 5.136 12 C -0.294 4.294 13 C 0.029 3.971 14 N -0.183 5.183 15 C -0.074 4.074 16 C -0.045 4.045 17 N -0.083 5.083 18 N -0.109 5.109 19 N -0.177 5.177 20 C -0.191 4.191 21 C -0.126 4.126 22 C 0.010 3.990 23 N -0.212 5.212 24 H 0.095 0.905 25 H 0.152 0.848 26 H 0.176 0.824 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.086 0.914 31 H 0.212 0.788 32 H 0.123 0.877 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.609 -2.918 -0.931 9.138 hybrid contribution 1.143 0.986 -0.269 1.533 sum -7.467 -1.932 -1.200 7.805 Atomic orbital electron populations 1.70064 1.08008 1.29578 1.25088 1.26767 0.96008 1.03701 0.93160 0.85283 0.78913 0.76189 0.79612 1.18359 1.18901 1.19462 1.19925 0.95532 0.90258 1.40982 0.89127 1.19499 0.89062 0.94001 0.90258 1.23088 0.99853 0.89274 1.16370 1.67598 1.09282 1.30344 1.06384 1.22552 0.90486 0.97058 1.19296 1.21109 0.91093 0.92015 0.92851 1.59540 1.00825 1.11167 1.46758 1.22955 1.01553 0.99385 0.83534 1.23094 1.03816 0.74159 1.03426 1.47281 1.46364 1.10173 1.04501 1.77876 1.22371 0.99346 1.11284 1.75102 1.18304 1.07940 1.16337 1.22946 1.07391 0.98544 0.90180 1.22620 1.05048 0.90835 0.94081 1.20933 1.02133 0.88566 0.87361 1.69385 1.08277 1.24276 1.19228 0.90466 0.84765 0.82415 0.85250 0.84368 0.84327 0.91352 0.78824 0.87727 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -32.83 10.80 21.84 0.24 -32.59 16 2 C 0.03 1.41 5.48 85.30 0.47 1.87 16 3 Si 0.98 36.16 29.57 68.60 2.03 38.19 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 6 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.44 -22.10 9.15 23.46 0.21 -21.88 16 8 H 0.09 4.36 7.86 -2.91 -0.02 4.33 16 9 C 0.20 10.30 6.54 40.17 0.26 10.57 16 10 C -0.12 -5.88 10.97 85.29 0.94 -4.94 16 11 N -0.42 -19.97 10.47 -192.23 -2.01 -21.98 16 12 C -0.13 -5.47 9.83 85.05 0.84 -4.64 16 13 C 0.27 11.29 4.94 133.36 0.66 11.95 16 14 N -0.47 -14.75 5.02 -703.65 -3.54 -18.29 16 15 C 0.05 1.20 5.53 86.41 0.48 1.68 16 16 C 0.08 2.21 6.69 86.49 0.58 2.79 16 17 N -0.29 -10.57 3.76 -334.26 -1.26 -11.83 16 18 N -0.13 -5.55 13.26 37.02 0.49 -5.06 16 19 N -0.31 -13.42 12.43 -58.69 -0.73 -14.15 16 20 C -0.03 -1.27 11.36 83.44 0.95 -0.32 16 21 C 0.01 0.28 5.68 40.99 0.23 0.51 16 22 C 0.14 4.40 5.84 85.41 0.50 4.90 16 23 N -0.49 -23.63 5.63 -185.99 -1.05 -24.68 16 24 H 0.28 12.01 8.29 -92.71 -0.77 11.24 16 25 H 0.13 6.31 8.06 -2.91 -0.02 6.28 16 26 H 0.16 5.34 7.07 -2.91 -0.02 5.32 16 27 H 0.13 2.08 8.07 -2.39 -0.02 2.06 16 28 H 0.14 2.43 7.03 -2.38 -0.02 2.41 16 29 H 0.14 2.93 8.14 -2.38 -0.02 2.91 16 30 H 0.07 2.40 7.02 -2.39 -0.02 2.38 16 31 H 0.19 6.38 8.06 -2.91 -0.02 6.35 16 32 H 0.10 3.98 7.22 -2.39 -0.02 3.96 16 33 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -65.72 279.23 1.44 -64.29 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.15 Total: 23.63 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.11 Total: 2.48 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -7.86 Total: -128.57 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -65.72 1.44 -64.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154823030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.128 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds