Wall clock time and date at job start Mon Mar 30 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35316 * 116.99883 * 2 1 4 4 N 1.32723 * 119.97334 * 0.27667 * 3 2 1 5 5 C 1.32978 * 120.03796 * 180.27586 * 4 3 2 6 6 N 1.38155 * 120.00593 * 179.71695 * 5 4 3 7 7 C 1.36998 * 120.00252 * 359.73083 * 6 5 4 8 8 H 1.08002 * 120.00307 * 359.97438 * 7 6 5 9 9 C 1.38870 * 120.00157 * 179.71932 * 7 6 5 10 10 N 1.31514 * 119.99482 * 0.27512 * 9 7 6 11 11 Si 1.86789 * 120.00326 * 180.27699 * 9 7 6 12 12 H 1.48506 * 109.47135 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47491 * 120.00117 * 11 9 7 14 14 H 1.48498 * 109.47073 * 240.00060 * 11 9 7 15 15 N 1.32954 * 119.98314 * 359.45158 * 5 4 3 16 16 C 1.32932 * 119.94908 * 0.26909 * 15 5 4 17 17 C 1.48275 * 120.01890 * 180.02562 * 16 15 5 18 18 C 1.39396 * 120.12450 * 359.72718 * 17 16 15 19 19 C 1.38003 * 119.86701 * 179.76581 * 18 17 16 20 20 C 1.38336 * 120.13011 * 0.51063 * 19 18 17 21 21 C 1.38333 * 120.25153 * 359.74565 * 20 19 18 22 22 C 1.38003 * 120.12797 * 359.97438 * 21 20 19 23 23 N 1.32745 * 119.97636 * 180.02562 * 3 2 1 24 24 H 1.09005 * 109.46863 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47290 * 299.99728 * 1 2 3 26 26 H 1.09002 * 109.47253 * 60.00432 * 1 2 3 27 27 H 0.97000 * 119.99459 * 179.72457 * 6 5 4 28 28 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 29 29 H 1.07997 * 120.06371 * 0.02562 * 18 17 16 30 30 H 1.08000 * 119.93407 * 180.22464 * 19 18 17 31 31 H 1.07998 * 119.87086 * 179.71435 * 20 19 18 32 32 H 1.08001 * 119.93365 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.06226 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2057 0.0000 4 7 1.3200 2.3184 0.0056 5 6 1.9223 3.5040 0.0000 6 7 1.1686 4.6619 -0.0001 7 6 -0.1994 4.5888 -0.0001 8 1 -0.6888 3.6260 -0.0004 9 6 -0.9570 5.7526 0.0057 10 7 -0.3611 6.9250 0.0056 11 14 -2.8222 5.6530 0.0135 12 1 -3.2419 4.2284 0.0116 13 1 -3.3487 6.3230 1.2297 14 1 -3.3591 6.3282 -1.1953 15 7 3.2499 3.5747 -0.0001 16 6 3.9739 2.4599 0.0000 17 6 5.4547 2.5370 0.0005 18 6 6.0906 3.7774 -0.0049 19 6 7.4691 3.8430 0.0005 20 6 8.2196 2.6809 0.0005 21 6 7.5938 1.4472 0.0004 22 6 6.2160 1.3693 0.0009 23 7 3.3690 1.2746 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6081 5.5266 -0.0001 28 1 -0.8902 7.7380 0.0093 29 1 5.5057 4.6853 -0.0089 30 1 7.9629 4.8035 0.0001 31 1 9.2981 2.7371 0.0000 32 1 8.1848 0.5432 0.0008 33 1 5.7286 0.4056 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:10 Heat of formation + Delta-G solvation = 46.293984 kcal Electronic energy + Delta-G solvation = -19674.073331 eV Core-core repulsion = 16507.263722 eV Total energy + Delta-G solvation = -3166.809608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26801 -40.00980 -39.42481 -37.62938 -34.76153 -34.13472 -32.61748 -31.69547 -31.47038 -28.55469 -27.28371 -25.45135 -24.55540 -23.14223 -22.39811 -20.56499 -19.83135 -18.74625 -17.68647 -17.64236 -17.43468 -16.43427 -16.26981 -15.65538 -15.61412 -15.45540 -15.19936 -14.91690 -14.42063 -14.21214 -13.99519 -13.62314 -13.40363 -12.90448 -12.82243 -12.58601 -12.38701 -12.19563 -12.09032 -11.91266 -11.33076 -10.81180 -10.39896 -10.24812 -9.85233 -9.79913 -9.61914 -8.69004 -6.03174 -0.35997 0.42258 0.56410 0.94457 1.39830 1.46539 1.55097 1.61188 2.08387 2.51408 2.71095 2.96058 2.98106 3.38653 3.67784 3.97363 4.16685 4.21587 4.35127 4.39610 4.44999 4.62291 4.69486 4.72981 4.90284 5.09519 5.22436 5.26065 5.48065 5.56393 5.61481 5.66650 5.90250 6.07174 6.11211 6.18877 6.61997 7.08498 7.14925 7.82233 8.47718 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.005089 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.377928 B = 5500.250633 C = 6849.476103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.298 6.298 3 C 0.550 3.450 4 N -0.666 5.666 5 C 0.519 3.481 6 N -0.490 5.490 7 C -0.312 4.312 8 H 0.111 0.889 9 C -0.012 4.012 10 N -0.907 5.907 11 Si 1.011 2.989 12 H -0.258 1.258 13 H -0.271 1.271 14 H -0.271 1.271 15 N -0.643 5.643 16 C 0.441 3.559 17 C -0.068 4.068 18 C -0.082 4.082 19 C -0.131 4.131 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.076 4.076 23 N -0.642 5.642 24 H 0.143 0.857 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.409 0.591 28 H 0.286 0.714 29 H 0.120 0.880 30 H 0.153 0.847 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.783 -7.820 -0.014 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.198 6.198 3 C 0.237 3.763 4 N -0.419 5.419 5 C 0.160 3.840 6 N -0.102 5.102 7 C -0.444 4.444 8 H 0.129 0.871 9 C -0.215 4.215 10 N -0.544 5.544 11 Si 0.832 3.168 12 H -0.182 1.182 13 H -0.196 1.196 14 H -0.196 1.196 15 N -0.380 5.380 16 C 0.167 3.833 17 C -0.071 4.071 18 C -0.102 4.102 19 C -0.149 4.149 20 C -0.108 4.108 21 C -0.146 4.146 22 C -0.096 4.096 23 N -0.388 5.388 24 H 0.160 0.840 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.171 0.829 31 H 0.181 0.819 32 H 0.176 0.824 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.332 -7.778 -0.008 12.148 hybrid contribution -1.349 0.837 0.003 1.588 sum 7.983 -6.941 -0.005 10.578 Atomic orbital electron populations 1.23170 0.74335 1.05155 1.02357 1.85988 1.24894 1.21953 1.86938 1.20652 0.86280 0.84868 0.84464 1.67998 1.40947 0.98003 1.34904 1.18893 0.84950 0.86205 0.93909 1.40588 1.06061 1.03389 1.60201 1.20212 0.79785 0.95852 1.48540 0.87109 1.26440 1.06340 0.93575 0.95173 1.69761 1.39339 0.98634 1.46619 0.84603 0.74505 0.79325 0.78353 1.18156 1.19591 1.19584 1.68337 1.05547 1.33099 1.31058 1.21565 0.95021 0.81951 0.84786 1.18197 0.85674 0.95902 1.07309 1.21393 0.95899 0.96392 0.96534 1.21429 0.92118 1.00632 1.00722 1.21772 1.01764 0.91555 0.95690 1.21472 0.92969 0.99750 1.00428 1.21430 0.94728 0.97372 0.96045 1.68126 1.07830 1.28786 1.34037 0.83957 0.92835 0.92843 0.75393 0.90452 0.86201 0.82945 0.81900 0.82359 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.39 113.37 1.18 2.54 16 2 O -0.30 -11.74 10.55 -86.04 -0.91 -12.65 16 3 C 0.55 25.54 8.55 180.32 1.54 27.08 16 4 N -0.67 -33.32 8.12 -315.74 -2.56 -35.89 16 5 C 0.52 27.09 8.43 261.19 2.20 29.29 16 6 N -0.49 -26.10 5.42 -193.93 -1.05 -27.15 16 7 C -0.31 -16.55 9.71 84.04 0.82 -15.73 16 8 H 0.11 5.88 7.08 -2.91 -0.02 5.86 16 9 C -0.01 -0.60 5.50 84.89 0.47 -0.14 16 10 N -0.91 -47.33 13.05 21.66 0.28 -47.05 16 11 Si 1.01 39.28 29.55 68.60 2.03 41.30 16 12 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 13 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 14 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 15 N -0.64 -31.45 9.63 -191.50 -1.85 -33.30 16 16 C 0.44 19.78 7.59 137.28 1.04 20.82 16 17 C -0.07 -2.47 5.88 -20.05 -0.12 -2.58 16 18 C -0.08 -2.58 9.58 22.49 0.22 -2.36 16 19 C -0.13 -2.93 10.03 22.24 0.22 -2.71 16 20 C -0.09 -1.62 10.04 22.32 0.22 -1.40 16 21 C -0.13 -2.66 10.03 22.24 0.22 -2.44 16 22 C -0.08 -2.22 9.58 22.49 0.22 -2.01 16 23 N -0.64 -29.31 9.63 -306.83 -2.95 -32.26 16 24 H 0.14 2.91 8.14 -2.38 -0.02 2.89 16 25 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 26 H 0.05 1.71 8.11 -2.39 -0.02 1.70 16 27 H 0.41 22.05 8.02 -92.71 -0.74 21.30 16 28 H 0.29 13.77 8.31 -92.70 -0.77 13.00 16 29 H 0.12 4.12 7.55 -2.91 -0.02 4.09 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.13 3.95 7.55 -2.91 -0.02 3.92 16 Total: -1.00 -65.48 299.62 1.63 -63.85 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.41 Total: 32.78 kcal Atomic # 6 Polarization: 42.14 SS G_CDS: 8.23 Total: 50.37 kcal Atomic # 7 Polarization: -167.52 SS G_CDS: -8.13 Total: -175.65 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.91 Total: -12.65 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.30 kcal Total: -65.48 1.63 -63.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.141 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds