Wall clock time and date at job start Mon Mar 30 2020 00:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86809 * 119.99859 * 2 1 4 4 H 1.48501 * 109.46924 * 239.99705 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99452 * 3 2 1 7 7 C 1.38825 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00354 * 180.02562 * 7 2 1 9 9 N 1.36893 * 120.00075 * 0.02562 * 7 2 1 10 10 C 1.38856 * 119.99930 * 180.27652 * 9 7 2 11 11 C 1.39090 * 119.64969 * 359.44708 * 10 9 7 12 12 C 1.39593 * 118.92102 * 179.75517 * 11 10 9 13 13 C 1.47971 * 120.88282 * 180.24128 * 12 11 10 14 14 N 1.32032 * 126.66377 * 179.97438 * 13 12 11 15 15 C 1.34216 * 105.55588 * 179.85925 * 14 13 12 16 16 C 1.50698 * 126.19304 * 180.18620 * 15 14 13 17 17 C 1.52999 * 117.50035 * 188.91454 * 16 15 14 18 18 C 1.52995 * 117.49970 * 120.29009 * 16 15 14 19 19 N 1.30036 * 107.61297 * 0.40925 * 15 14 13 20 20 O 1.21289 * 110.46426 * 359.73887 * 19 15 14 21 21 C 1.40118 * 118.23200 * 0.51229 * 12 11 10 22 22 C 1.37944 * 119.17999 * 359.74771 * 21 12 11 23 23 N 1.31907 * 121.01249 * 359.97438 * 22 21 12 24 24 H 0.96999 * 120.00216 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99581 * 359.97438 * 9 7 2 26 26 H 1.07998 * 120.53684 * 0.02562 * 11 10 9 27 27 H 1.08998 * 115.54954 * 334.61693 * 16 15 14 28 28 H 1.09003 * 117.49482 * 359.97438 * 17 16 15 29 29 H 1.08995 * 117.50167 * 145.01990 * 17 16 15 30 30 H 1.09002 * 117.49880 * 214.97701 * 18 16 15 31 31 H 1.08998 * 117.49918 * 359.97438 * 18 16 15 32 32 H 1.07997 * 120.40976 * 179.73249 * 21 12 11 33 33 H 1.08003 * 119.49698 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6966 1.2126 7 6 2.0097 -1.2022 0.0005 8 1 3.0898 -1.2022 0.0010 9 7 1.3254 -2.3878 0.0005 10 6 2.0197 -3.5903 0.0069 11 6 3.4106 -3.5817 0.0015 12 6 4.0932 -4.7993 0.0133 13 6 5.5724 -4.8407 0.0135 14 7 6.3307 -5.9215 0.0244 15 6 7.5959 -5.4735 0.0166 16 6 8.8407 -6.3228 0.0198 17 6 10.1806 -5.6118 0.2198 18 6 9.8063 -6.1655 -1.1565 19 7 7.5531 -4.1738 0.0105 20 8 6.4034 -3.7874 0.0086 21 6 3.3406 -5.9811 0.0189 22 6 1.9634 -5.9014 0.0181 23 7 1.3502 -4.7336 0.0126 24 1 -0.4850 0.8400 -0.0004 25 1 0.3554 -2.3878 0.0005 26 1 3.9535 -2.6482 -0.0071 27 1 8.7297 -7.3181 0.4501 28 1 10.1617 -4.5296 0.3486 29 1 10.9513 -6.1392 0.7818 30 1 10.3308 -7.0573 -1.4998 31 1 9.5410 -5.4480 -1.9330 32 1 3.8325 -6.9425 0.0236 33 1 1.3782 -6.8092 0.0229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:17 Heat of formation + Delta-G solvation = 137.540375 kcal Electronic energy + Delta-G solvation = -19382.978688 eV Core-core repulsion = 16220.125820 eV Total energy + Delta-G solvation = -3162.852868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.30729 -39.23626 -37.80728 -35.66677 -35.07656 -33.16929 -32.05959 -30.44654 -28.63734 -25.42662 -24.94253 -24.55869 -22.75567 -22.62675 -21.41285 -20.23222 -18.07732 -17.88607 -17.80324 -16.68088 -15.74398 -15.56342 -15.06763 -14.75523 -14.63801 -13.79349 -13.45835 -13.40488 -13.08772 -12.75932 -12.25448 -12.11111 -11.86546 -11.80072 -11.52077 -11.19320 -11.14197 -10.96356 -10.72980 -10.54716 -10.46338 -10.44383 -9.97254 -8.95235 -8.69271 -8.62131 -7.18398 -6.77325 -3.98048 0.83867 1.94610 2.18597 2.76194 2.96060 3.08490 3.09635 3.10396 3.48622 3.62280 3.87534 4.14891 4.53191 4.55807 4.62949 4.70968 4.81303 5.08156 5.30321 5.34640 5.46933 5.49579 5.78211 5.80626 5.84368 5.89938 6.05170 6.11204 6.26384 6.52339 6.73446 6.91557 7.12736 7.32083 7.65385 8.32330 8.43318 8.76614 9.11589 9.48432 10.37924 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.004531 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.317246 B = 6178.791449 C = 7489.245810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.029 3.971 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.107 0.893 9 N -0.519 5.519 10 C 0.357 3.643 11 C -0.210 4.210 12 C 0.048 3.952 13 C 0.252 3.748 14 N -0.476 5.476 15 C 0.197 3.803 16 C -0.075 4.075 17 C -0.160 4.160 18 C -0.158 4.158 19 N -0.392 5.392 20 O 0.082 5.918 21 C -0.264 4.264 22 C 0.166 3.834 23 N -0.563 5.563 24 H 0.280 0.720 25 H 0.407 0.593 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.826 -8.680 -0.349 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.125 0.875 9 N -0.124 5.124 10 C 0.113 3.887 11 C -0.240 4.240 12 C 0.039 3.961 13 C 0.036 3.964 14 N -0.209 5.209 15 C -0.075 4.075 16 C -0.094 4.094 17 C -0.198 4.198 18 C -0.196 4.196 19 N -0.101 5.101 20 O 0.024 5.976 21 C -0.292 4.292 22 C 0.003 3.997 23 N -0.285 5.285 24 H 0.091 0.909 25 H 0.243 0.757 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.587 -8.002 -0.340 14.919 hybrid contribution 0.664 0.842 0.022 1.073 sum 13.251 -7.160 -0.318 15.065 Atomic orbital electron populations 1.69679 1.06160 1.29319 1.45983 1.25390 0.95777 1.00201 0.96365 0.85820 0.78911 0.79652 0.79492 1.19359 1.20455 1.19350 1.19770 0.93212 0.82112 1.48710 0.87535 1.40860 1.08963 1.01040 1.61516 1.18014 0.87715 0.86356 0.96651 1.21236 0.94132 0.96905 1.11729 1.17118 0.81779 0.95251 1.01998 1.26628 0.95424 0.80238 0.94144 1.72034 1.00051 1.27435 1.21371 1.24680 0.93778 0.88290 1.00753 1.20021 0.84299 0.98836 1.06286 1.23071 0.95751 1.01477 0.99483 1.23067 1.01077 1.03695 0.91779 1.74533 0.98715 1.14536 1.22290 1.85414 1.10882 1.35446 1.65816 1.21152 0.94586 0.96545 1.16930 1.21964 0.90963 0.94312 0.92500 1.67017 1.40707 0.97444 1.23357 0.90950 0.75652 0.84743 0.84730 0.87799 0.87545 0.87451 0.88419 0.85751 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.45 13.05 55.49 0.72 -21.72 16 2 C 0.03 0.70 5.50 -17.45 -0.10 0.61 16 3 Si 0.94 18.94 29.55 -169.99 -5.02 13.92 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.31 -7.55 9.54 -15.07 -0.14 -7.69 16 8 H 0.11 2.47 5.65 -52.49 -0.30 2.18 16 9 N -0.52 -12.59 5.44 -11.18 -0.06 -12.65 16 10 C 0.36 8.03 7.61 -155.10 -1.18 6.85 16 11 C -0.21 -4.37 9.05 -38.76 -0.35 -4.72 16 12 C 0.05 0.91 5.90 -104.70 -0.62 0.29 16 13 C 0.25 4.60 8.05 -13.82 -0.11 4.48 16 14 N -0.48 -8.26 11.35 -10.16 -0.12 -8.38 16 15 C 0.20 3.11 7.73 -156.55 -1.21 1.90 16 16 C -0.07 -0.86 6.33 -91.78 -0.58 -1.44 16 17 C -0.16 -1.49 10.14 -26.73 -0.27 -1.76 16 18 C -0.16 -1.46 10.23 -26.73 -0.27 -1.74 16 19 N -0.39 -6.69 11.75 31.17 0.37 -6.33 16 20 O 0.08 1.50 11.22 16.74 0.19 1.68 16 21 C -0.26 -4.65 9.80 -38.98 -0.38 -5.03 16 22 C 0.17 2.95 11.16 -17.63 -0.20 2.76 16 23 N -0.56 -11.95 10.37 -12.50 -0.13 -12.08 16 24 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.41 10.22 8.01 -40.82 -0.33 9.89 16 26 H 0.13 2.76 5.91 -52.49 -0.31 2.45 16 27 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.10 1.10 7.91 -51.93 -0.41 0.69 16 29 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.12 1.98 7.96 -52.49 -0.42 1.57 16 33 H 0.15 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -26.79 299.48 -7.96 -34.76 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.01 Total: 11.76 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -5.41 Total: -5.48 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.78 Total: -61.15 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.79 -7.96 -34.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.299 kcal (2) G-P(sol) polarization free energy of solvation -26.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds