Wall clock time and date at job start Mon Mar 30 2020 00:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86809 * 119.99859 * 2 1 4 4 H 1.48501 * 109.46924 * 239.99705 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99452 * 3 2 1 7 7 C 1.38825 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00354 * 180.02562 * 7 2 1 9 9 N 1.36893 * 120.00075 * 0.02562 * 7 2 1 10 10 C 1.38856 * 119.99930 * 180.27652 * 9 7 2 11 11 C 1.39090 * 119.64969 * 359.44708 * 10 9 7 12 12 C 1.39593 * 118.92102 * 179.75517 * 11 10 9 13 13 C 1.47971 * 120.88282 * 180.24128 * 12 11 10 14 14 N 1.32032 * 126.66377 * 179.97438 * 13 12 11 15 15 C 1.34216 * 105.55588 * 179.85925 * 14 13 12 16 16 C 1.50698 * 126.19304 * 180.18620 * 15 14 13 17 17 C 1.52999 * 117.50035 * 188.91454 * 16 15 14 18 18 C 1.52995 * 117.49970 * 120.29009 * 16 15 14 19 19 N 1.30036 * 107.61297 * 0.40925 * 15 14 13 20 20 O 1.21289 * 110.46426 * 359.73887 * 19 15 14 21 21 C 1.40118 * 118.23200 * 0.51229 * 12 11 10 22 22 C 1.37944 * 119.17999 * 359.74771 * 21 12 11 23 23 N 1.31907 * 121.01249 * 359.97438 * 22 21 12 24 24 H 0.96999 * 120.00216 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99581 * 359.97438 * 9 7 2 26 26 H 1.07998 * 120.53684 * 0.02562 * 11 10 9 27 27 H 1.08998 * 115.54954 * 334.61693 * 16 15 14 28 28 H 1.09003 * 117.49482 * 359.97438 * 17 16 15 29 29 H 1.08995 * 117.50167 * 145.01990 * 17 16 15 30 30 H 1.09002 * 117.49880 * 214.97701 * 18 16 15 31 31 H 1.08998 * 117.49918 * 359.97438 * 18 16 15 32 32 H 1.07997 * 120.40976 * 179.73249 * 21 12 11 33 33 H 1.08003 * 119.49698 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6966 1.2126 7 6 2.0097 -1.2022 0.0005 8 1 3.0898 -1.2022 0.0010 9 7 1.3254 -2.3878 0.0005 10 6 2.0197 -3.5903 0.0069 11 6 3.4106 -3.5817 0.0015 12 6 4.0932 -4.7993 0.0133 13 6 5.5724 -4.8407 0.0135 14 7 6.3307 -5.9215 0.0244 15 6 7.5959 -5.4735 0.0166 16 6 8.8407 -6.3228 0.0198 17 6 10.1806 -5.6118 0.2198 18 6 9.8063 -6.1655 -1.1565 19 7 7.5531 -4.1738 0.0105 20 8 6.4034 -3.7874 0.0086 21 6 3.3406 -5.9811 0.0189 22 6 1.9634 -5.9014 0.0181 23 7 1.3502 -4.7336 0.0126 24 1 -0.4850 0.8400 -0.0004 25 1 0.3554 -2.3878 0.0005 26 1 3.9535 -2.6482 -0.0071 27 1 8.7297 -7.3181 0.4501 28 1 10.1617 -4.5296 0.3486 29 1 10.9513 -6.1392 0.7818 30 1 10.3308 -7.0573 -1.4998 31 1 9.5410 -5.4480 -1.9330 32 1 3.8325 -6.9425 0.0236 33 1 1.3782 -6.8092 0.0229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:16 Heat of formation + Delta-G solvation = 121.344786 kcal Electronic energy + Delta-G solvation = -19383.680981 eV Core-core repulsion = 16220.125820 eV Total energy + Delta-G solvation = -3163.555161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.64716 -40.87988 -38.70427 -37.29777 -36.44015 -34.63202 -33.78739 -31.90417 -30.28593 -26.97947 -26.32831 -25.99631 -24.12662 -23.36921 -22.96874 -21.49913 -19.74588 -19.29893 -19.18070 -18.07442 -17.27344 -16.68860 -16.61556 -16.33826 -15.70105 -15.36175 -15.12840 -14.99140 -14.54782 -13.95581 -13.57478 -13.43983 -13.21841 -13.12916 -12.77693 -12.57881 -12.48145 -12.27723 -12.17176 -12.13059 -11.98245 -11.54516 -11.11116 -10.67223 -10.25897 -10.20840 -8.87658 -8.55164 -5.84471 -0.63909 0.58403 0.64817 1.30829 1.42688 1.51016 1.53131 1.54539 2.21222 2.33410 2.72334 2.84425 2.95963 3.11906 3.35497 3.61662 3.76482 3.94745 3.99072 4.11433 4.33778 4.46079 4.53555 4.65043 4.68107 4.74035 4.89886 4.98209 5.02545 5.15013 5.15318 5.23008 5.44745 5.64714 6.00184 6.66123 6.95950 7.05650 7.35903 7.74600 8.62481 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.004531 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.317246 B = 6178.791449 C = 7489.245810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.018 4.018 3 Si 0.998 3.002 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.325 4.325 8 H 0.110 0.890 9 N -0.549 5.549 10 C 0.354 3.646 11 C -0.231 4.231 12 C 0.050 3.950 13 C 0.242 3.758 14 N -0.476 5.476 15 C 0.203 3.797 16 C -0.100 4.100 17 C -0.149 4.149 18 C -0.145 4.145 19 N -0.405 5.405 20 O 0.066 5.934 21 C -0.236 4.236 22 C 0.166 3.834 23 N -0.579 5.579 24 H 0.279 0.721 25 H 0.397 0.603 26 H 0.128 0.872 27 H 0.155 0.845 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.299 -11.213 -0.364 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.821 3.179 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.455 4.455 8 H 0.127 0.873 9 N -0.156 5.156 10 C 0.112 3.888 11 C -0.261 4.261 12 C 0.040 3.960 13 C 0.025 3.975 14 N -0.210 5.210 15 C -0.069 4.069 16 C -0.119 4.119 17 C -0.187 4.187 18 C -0.183 4.183 19 N -0.116 5.116 20 O 0.012 5.988 21 C -0.263 4.263 22 C 0.004 3.996 23 N -0.301 5.301 24 H 0.089 0.911 25 H 0.231 0.769 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.105 0.895 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.101 0.899 32 H 0.170 0.830 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 15.087 -10.576 -0.356 18.428 hybrid contribution 0.094 1.199 0.021 1.203 sum 15.181 -9.377 -0.335 17.846 Atomic orbital electron populations 1.69781 1.07449 1.29738 1.48684 1.26204 0.96476 1.02954 0.96264 0.84890 0.77643 0.75893 0.79498 1.18933 1.20263 1.18931 1.20017 0.93486 0.82770 1.49226 0.87253 1.40825 1.08304 1.01553 1.64963 1.18317 0.88345 0.86503 0.95644 1.21187 0.93618 0.97674 1.13611 1.17271 0.82563 0.95113 1.01047 1.26516 0.95201 0.80782 0.95021 1.72037 1.00721 1.27044 1.21195 1.25499 0.94636 0.88221 0.98561 1.20402 0.83278 0.99341 1.08900 1.23176 0.94882 1.00715 0.99887 1.23187 0.99558 1.04479 0.91054 1.74549 0.98165 1.15473 1.23406 1.85408 1.11347 1.35795 1.66294 1.21601 0.94638 0.97096 1.13014 1.22775 0.91603 0.94620 0.90590 1.67099 1.41558 0.98084 1.23347 0.91127 0.76904 0.85379 0.82748 0.89530 0.84433 0.84293 0.89903 0.82973 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.29 13.05 21.65 0.28 -49.01 16 2 C -0.02 -0.90 5.50 84.87 0.47 -0.44 16 3 Si 1.00 40.03 29.55 68.60 2.03 42.06 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.33 -16.67 9.54 84.04 0.80 -15.87 16 8 H 0.11 5.32 5.65 -2.91 -0.02 5.31 16 9 N -0.55 -27.84 5.44 -189.30 -1.03 -28.87 16 10 C 0.35 16.19 7.61 133.07 1.01 17.20 16 11 C -0.23 -9.74 9.05 22.80 0.21 -9.54 16 12 C 0.05 1.83 5.90 -19.91 -0.12 1.71 16 13 C 0.24 8.56 8.05 87.37 0.70 9.26 16 14 N -0.48 -15.53 11.35 -302.84 -3.44 -18.97 16 15 C 0.20 6.03 7.73 138.52 1.07 7.10 16 16 C -0.10 -1.98 6.33 -11.54 -0.07 -2.05 16 17 C -0.15 -2.31 10.14 30.59 0.31 -2.00 16 18 C -0.14 -2.20 10.23 30.59 0.31 -1.88 16 19 N -0.40 -13.51 11.75 -58.75 -0.69 -14.20 16 20 O 0.07 2.38 11.22 69.96 0.79 3.16 16 21 C -0.24 -7.61 9.80 22.66 0.22 -7.39 16 22 C 0.17 5.42 11.16 84.61 0.94 6.36 16 23 N -0.58 -24.11 10.37 -193.46 -2.01 -26.12 16 24 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.40 21.05 8.01 -92.71 -0.74 20.30 16 26 H 0.13 5.49 5.91 -2.91 -0.02 5.48 16 27 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.09 1.68 7.91 -2.39 -0.02 1.66 16 29 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.15 4.15 7.96 -2.91 -0.02 4.12 16 33 H 0.19 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -59.99 299.48 2.22 -57.77 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.43 Total: 31.69 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.86 Total: 2.48 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -6.88 Total: -137.16 kcal Atomic # 8 Polarization: 2.38 SS G_CDS: 0.79 Total: 3.16 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -59.99 2.22 -57.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.115 kcal (2) G-P(sol) polarization free energy of solvation -59.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds