Wall clock time and date at job start Mon Mar 30 2020 00:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86805 * 119.99832 * 2 1 4 4 H 1.48504 * 109.46778 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46928 * 299.99577 * 3 2 1 6 6 H 1.48489 * 109.47175 * 59.99871 * 3 2 1 7 7 C 1.40060 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99583 * 186.33114 * 7 2 1 9 9 C 1.41266 * 119.99894 * 6.33235 * 7 2 1 10 10 C 1.40721 * 120.15818 * 173.83011 * 9 7 2 11 11 N 1.31896 * 119.93337 * 180.02562 * 10 9 7 12 12 C 1.32153 * 120.27186 * 359.97438 * 11 10 9 13 13 C 1.39916 * 120.32060 * 0.02562 * 12 11 10 14 14 N 1.38837 * 119.97317 * 179.97438 * 13 12 11 15 15 C 1.46509 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.50696 * 109.46731 * 179.97438 * 15 14 13 17 17 C 1.38833 * 120.35419 * 90.00043 * 16 15 14 18 18 C 1.38375 * 118.48642 * 180.02562 * 17 16 15 19 19 C 1.38927 * 119.10988 * 359.97438 * 18 17 16 20 20 O 1.35675 * 119.68307 * 179.97438 * 19 18 17 21 21 N 1.32247 * 120.63034 * 359.97438 * 19 18 17 22 22 C 1.31962 * 121.64856 * 0.03951 * 21 19 18 23 23 N 1.32259 * 120.06607 * 0.25176 * 13 12 11 24 24 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03239 * 0.04319 * 10 9 7 26 26 H 1.08005 * 119.84103 * 180.02562 * 12 11 10 27 27 H 0.96989 * 120.00522 * 179.97438 * 14 13 12 28 28 H 1.08995 * 109.46921 * 59.99427 * 15 14 13 29 29 H 1.08997 * 109.46469 * 299.99683 * 15 14 13 30 30 H 1.07995 * 120.75636 * 0.02562 * 17 16 15 31 31 H 1.07997 * 120.44498 * 179.72808 * 18 17 16 32 32 H 0.96705 * 113.99961 * 90.00478 * 20 19 18 33 33 H 1.07997 * 119.58130 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2130 0.0005 8 1 3.0826 -1.2157 0.1037 9 6 1.3077 -2.4327 -0.1338 10 6 2.0143 -3.6426 -0.2641 11 7 1.3564 -4.7788 -0.3898 12 6 0.0349 -4.7865 -0.3935 13 6 -0.6788 -3.5899 -0.2648 14 7 -2.0671 -3.6063 -0.2701 15 6 -2.7840 -4.8763 -0.4100 16 6 -4.2689 -4.6201 -0.3854 17 6 -4.9575 -4.3711 -1.5649 18 6 -6.3202 -4.1404 -1.4973 19 6 -6.9495 -4.1660 -0.2590 20 8 -8.2851 -3.9408 -0.1793 21 7 -6.2592 -4.4079 0.8427 22 6 -4.9590 -4.6313 0.8101 23 7 -0.0322 -2.4425 -0.1434 24 1 -0.4850 0.8401 -0.0004 25 1 3.0944 -3.6409 -0.2608 26 1 -0.4969 -5.7209 -0.4965 27 1 -2.5622 -2.7772 -0.1805 28 1 -2.5159 -5.5375 0.4139 29 1 -2.5114 -5.3450 -1.3556 30 1 -4.4415 -4.3578 -2.5134 31 1 -6.8863 -3.9391 -2.3948 32 1 -8.8238 -4.7407 -0.2511 33 1 -4.4281 -4.8249 1.7304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157515840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:38 Heat of formation + Delta-G solvation = 44.353629 kcal Electronic energy + Delta-G solvation = -19295.970930 eV Core-core repulsion = 16129.077182 eV Total energy + Delta-G solvation = -3166.893748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63603 -38.91808 -37.50908 -35.44708 -33.91529 -32.75465 -31.81442 -30.81794 -28.78004 -25.85735 -25.56046 -23.87489 -22.56763 -22.05572 -20.93665 -19.01983 -17.54871 -17.05391 -16.87597 -16.17394 -15.37937 -15.32002 -14.91764 -14.68314 -14.30069 -13.88931 -13.77987 -13.34010 -13.04235 -12.94507 -12.59799 -11.98089 -11.78661 -11.46844 -11.37813 -11.28455 -10.73053 -10.36602 -10.04682 -9.93145 -9.69468 -9.55448 -9.40179 -9.01923 -8.38159 -7.40946 -6.76696 -6.46755 -4.67718 0.75689 1.06039 2.67904 3.04088 3.08000 3.09991 3.25871 3.27672 3.56906 3.86439 4.20520 4.49755 4.65172 4.69715 4.79748 4.82987 5.15079 5.42004 5.66546 5.74148 5.78871 5.89103 6.06185 6.15939 6.29323 6.34159 6.49647 6.75715 7.01730 7.10625 7.25294 7.56952 7.73621 7.91499 8.02283 8.39183 8.53997 8.82541 9.39528 9.98101 10.17015 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.004151 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.429436 B = 6744.021630 C = 7740.321261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.415 4.415 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.106 4.106 11 N -0.407 5.407 12 C -0.171 4.171 13 C 0.373 3.627 14 N -0.730 5.730 15 C 0.185 3.815 16 C -0.156 4.156 17 C -0.040 4.040 18 C -0.188 4.188 19 C 0.308 3.692 20 O -0.484 6.484 21 N -0.505 5.505 22 C 0.144 3.856 23 N -0.508 5.508 24 H 0.274 0.726 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.397 0.603 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.399 0.601 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 -5.785 -2.548 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.117 3.883 10 C -0.276 4.276 11 N -0.119 5.119 12 C -0.332 4.332 13 C 0.130 3.870 14 N -0.367 5.367 15 C 0.059 3.941 16 C -0.159 4.159 17 C -0.066 4.066 18 C -0.209 4.209 19 C 0.129 3.871 20 O -0.291 6.291 21 N -0.224 5.224 22 C -0.014 4.014 23 N -0.234 5.234 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.232 0.768 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.256 0.744 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.431 -5.305 -1.748 13.628 hybrid contribution 0.231 0.691 -0.819 1.096 sum -12.199 -4.614 -2.567 13.293 Atomic orbital electron populations 1.70114 1.07389 1.27965 1.27527 1.26137 0.94922 1.01352 0.93454 0.86223 0.80964 0.80801 0.78621 1.18129 1.19761 1.19774 1.19672 0.94989 0.89252 1.40905 0.89083 1.19097 0.87636 0.93248 0.88283 1.22916 0.98991 0.89325 1.16412 1.67500 1.08245 1.30142 1.05999 1.21903 0.90761 0.95745 1.24831 1.19474 0.84783 0.92084 0.90704 1.44100 1.02577 1.07281 1.82787 1.19881 0.84815 0.87494 1.01940 1.21027 0.97439 1.03042 0.94344 1.21525 0.93142 0.93010 0.98967 1.22103 0.95992 1.04478 0.98350 1.19241 0.85206 0.94570 0.88103 1.84792 1.12923 1.35908 1.95446 1.67210 1.09573 1.13440 1.32127 1.22533 0.88095 0.92949 0.97790 1.69023 1.08391 1.22336 1.23698 0.91517 0.85243 0.86243 0.76810 0.91393 0.91552 0.83973 0.84159 0.74405 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.28 11.51 55.55 0.64 -17.64 16 2 C 0.07 1.67 5.49 -17.34 -0.10 1.57 16 3 Si 0.91 17.99 29.57 -169.99 -5.03 12.96 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.42 -10.78 9.15 -37.75 -0.35 -11.13 16 8 H 0.09 2.18 7.86 -52.49 -0.41 1.77 16 9 C 0.25 6.67 6.54 -84.83 -0.55 6.11 16 10 C -0.11 -2.72 10.97 -16.59 -0.18 -2.90 16 11 N -0.41 -10.24 10.47 -12.11 -0.13 -10.37 16 12 C -0.17 -3.99 10.49 -16.79 -0.18 -4.16 16 13 C 0.37 8.81 7.66 -155.01 -1.19 7.62 16 14 N -0.73 -13.66 5.71 -61.46 -0.35 -14.01 16 15 C 0.18 2.56 5.04 -5.19 -0.03 2.54 16 16 C -0.16 -1.90 5.26 -104.47 -0.55 -2.45 16 17 C -0.04 -0.44 9.85 -39.31 -0.39 -0.83 16 18 C -0.19 -1.96 10.04 -39.28 -0.39 -2.35 16 19 C 0.31 3.70 7.74 -17.12 -0.13 3.57 16 20 O -0.48 -4.97 13.56 -18.73 -0.25 -5.23 16 21 N -0.51 -6.87 10.39 -13.33 -0.14 -7.00 16 22 C 0.14 1.81 10.85 -17.57 -0.19 1.61 16 23 N -0.51 -13.69 8.10 -10.14 -0.08 -13.77 16 24 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 25 H 0.13 3.02 8.06 -52.49 -0.42 2.60 16 26 H 0.12 2.41 6.70 -52.48 -0.35 2.06 16 27 H 0.40 7.64 8.59 -40.82 -0.35 7.29 16 28 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 29 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.40 1.91 9.06 45.56 0.41 2.33 16 33 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 298.23 15.07 4.49 4.49 Total: -1.00 -32.31 298.23 -7.41 -39.72 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -2.35 Total: 11.65 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -4.22 Total: -0.80 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.06 Total: -62.80 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.25 Total: -5.23 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.31 -7.41 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157515840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.078 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds