Wall clock time and date at job start Mon Mar 30 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86805 * 119.99832 * 2 1 4 4 H 1.48504 * 109.46778 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46928 * 299.99577 * 3 2 1 6 6 H 1.48489 * 109.47175 * 59.99871 * 3 2 1 7 7 C 1.40060 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99583 * 186.33114 * 7 2 1 9 9 C 1.41266 * 119.99894 * 6.33235 * 7 2 1 10 10 C 1.40721 * 120.15818 * 173.83011 * 9 7 2 11 11 N 1.31896 * 119.93337 * 180.02562 * 10 9 7 12 12 C 1.32153 * 120.27186 * 359.97438 * 11 10 9 13 13 C 1.39916 * 120.32060 * 0.02562 * 12 11 10 14 14 N 1.38837 * 119.97317 * 179.97438 * 13 12 11 15 15 C 1.46509 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.50696 * 109.46731 * 179.97438 * 15 14 13 17 17 C 1.38833 * 120.35419 * 90.00043 * 16 15 14 18 18 C 1.38375 * 118.48642 * 180.02562 * 17 16 15 19 19 C 1.38927 * 119.10988 * 359.97438 * 18 17 16 20 20 O 1.35675 * 119.68307 * 179.97438 * 19 18 17 21 21 N 1.32247 * 120.63034 * 359.97438 * 19 18 17 22 22 C 1.31962 * 121.64856 * 0.03951 * 21 19 18 23 23 N 1.32259 * 120.06607 * 0.25176 * 13 12 11 24 24 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03239 * 0.04319 * 10 9 7 26 26 H 1.08005 * 119.84103 * 180.02562 * 12 11 10 27 27 H 0.96989 * 120.00522 * 179.97438 * 14 13 12 28 28 H 1.08995 * 109.46921 * 59.99427 * 15 14 13 29 29 H 1.08997 * 109.46469 * 299.99683 * 15 14 13 30 30 H 1.07995 * 120.75636 * 0.02562 * 17 16 15 31 31 H 1.07997 * 120.44498 * 179.72808 * 18 17 16 32 32 H 0.96705 * 113.99961 * 90.00478 * 20 19 18 33 33 H 1.07997 * 119.58130 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2130 0.0005 8 1 3.0826 -1.2157 0.1037 9 6 1.3077 -2.4327 -0.1338 10 6 2.0143 -3.6426 -0.2641 11 7 1.3564 -4.7788 -0.3898 12 6 0.0349 -4.7865 -0.3935 13 6 -0.6788 -3.5899 -0.2648 14 7 -2.0671 -3.6063 -0.2701 15 6 -2.7840 -4.8763 -0.4100 16 6 -4.2689 -4.6201 -0.3854 17 6 -4.9575 -4.3711 -1.5649 18 6 -6.3202 -4.1404 -1.4973 19 6 -6.9495 -4.1660 -0.2590 20 8 -8.2851 -3.9408 -0.1793 21 7 -6.2592 -4.4079 0.8427 22 6 -4.9590 -4.6313 0.8101 23 7 -0.0322 -2.4425 -0.1434 24 1 -0.4850 0.8401 -0.0004 25 1 3.0944 -3.6409 -0.2608 26 1 -0.4969 -5.7209 -0.4965 27 1 -2.5622 -2.7772 -0.1805 28 1 -2.5159 -5.5375 0.4139 29 1 -2.5114 -5.3450 -1.3556 30 1 -4.4415 -4.3578 -2.5134 31 1 -6.8863 -3.9391 -2.3948 32 1 -8.8238 -4.7407 -0.2511 33 1 -4.4281 -4.8249 1.7304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157515840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:37 Heat of formation + Delta-G solvation = 18.560122 kcal Electronic energy + Delta-G solvation = -19297.089421 eV Core-core repulsion = 16129.077182 eV Total energy + Delta-G solvation = -3168.012239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54985 -40.73475 -38.41921 -36.85135 -35.75990 -33.97250 -33.31108 -32.18049 -30.36714 -27.73447 -26.75739 -24.76163 -24.30550 -23.37551 -22.53788 -19.83679 -19.39321 -18.49520 -17.96664 -17.21688 -17.04817 -16.73068 -16.65415 -15.98085 -15.36732 -15.32244 -15.17142 -14.71046 -14.23851 -14.05978 -13.93640 -13.28194 -13.19287 -12.99992 -12.84838 -12.63678 -12.53121 -11.96793 -11.73474 -11.39554 -11.33006 -10.94893 -10.49562 -10.21141 -9.92845 -9.30207 -8.47429 -8.31833 -6.62123 -0.14385 0.18663 0.85901 1.27984 1.42987 1.55575 1.59202 2.21668 2.34695 2.63701 2.84734 2.90105 3.57422 3.72097 3.86455 3.94824 3.98278 4.24154 4.30155 4.46092 4.53216 4.62673 4.74293 4.77071 4.93328 4.98158 5.16907 5.22446 5.23487 5.50892 5.74071 6.11312 6.23831 6.59554 6.65564 6.69198 6.86953 6.99459 7.49315 8.10350 8.35834 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.004151 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.429436 B = 6744.021630 C = 7740.321261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.443 4.443 8 H 0.100 0.900 9 C 0.217 3.783 10 C -0.134 4.134 11 N -0.417 5.417 12 C -0.172 4.172 13 C 0.366 3.634 14 N -0.719 5.719 15 C 0.185 3.815 16 C -0.161 4.161 17 C -0.038 4.038 18 C -0.182 4.182 19 C 0.302 3.698 20 O -0.493 6.493 21 N -0.534 5.534 22 C 0.136 3.864 23 N -0.541 5.541 24 H 0.281 0.719 25 H 0.141 0.859 26 H 0.153 0.847 27 H 0.393 0.607 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.421 0.579 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 -5.574 -3.281 14.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.476 4.476 8 H 0.118 0.882 9 C 0.089 3.911 10 C -0.303 4.303 11 N -0.128 5.128 12 C -0.334 4.334 13 C 0.121 3.879 14 N -0.355 5.355 15 C 0.061 3.939 16 C -0.164 4.164 17 C -0.064 4.064 18 C -0.203 4.203 19 C 0.123 3.877 20 O -0.304 6.304 21 N -0.253 5.253 22 C -0.021 4.021 23 N -0.269 5.269 24 H 0.092 0.908 25 H 0.158 0.842 26 H 0.170 0.830 27 H 0.228 0.772 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.282 0.718 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.329 -5.146 -2.484 14.502 hybrid contribution 0.287 0.515 -0.600 0.841 sum -13.042 -4.631 -3.085 14.180 Atomic orbital electron populations 1.70197 1.09071 1.29388 1.27927 1.27068 0.95721 1.04712 0.92338 0.85018 0.79658 0.75523 0.78713 1.17276 1.19231 1.19160 1.20073 0.95717 0.90004 1.41767 0.88173 1.19507 0.88332 0.94275 0.88952 1.23044 0.99635 0.89328 1.18269 1.67513 1.09194 1.29988 1.06120 1.22414 0.90447 0.96966 1.23596 1.19809 0.86653 0.91568 0.89821 1.44288 1.00883 1.09019 1.81315 1.20069 0.85502 0.85451 1.02919 1.20820 0.96277 1.04405 0.94875 1.21771 0.93497 0.91994 0.99171 1.22335 0.95845 1.03379 0.98745 1.19519 0.85845 0.93970 0.88345 1.84738 1.12460 1.37727 1.95426 1.67211 1.10045 1.14730 1.33322 1.22649 0.88095 0.93024 0.98289 1.69021 1.08664 1.24018 1.25202 0.90840 0.84191 0.83019 0.77218 0.90441 0.90237 0.82295 0.81503 0.71775 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.79 11.51 21.84 0.25 -38.54 16 2 C 0.02 1.22 5.49 85.30 0.47 1.69 16 3 Si 0.99 36.62 29.57 68.60 2.03 38.65 16 4 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.44 -23.40 9.15 23.46 0.21 -23.18 16 8 H 0.10 4.86 7.86 -2.91 -0.02 4.84 16 9 C 0.22 12.07 6.54 40.16 0.26 12.33 16 10 C -0.13 -7.01 10.97 85.29 0.94 -6.07 16 11 N -0.42 -20.93 10.47 -192.23 -2.01 -22.94 16 12 C -0.17 -7.86 10.49 85.05 0.89 -6.96 16 13 C 0.37 17.27 7.66 133.35 1.02 18.29 16 14 N -0.72 -26.36 5.71 -348.36 -1.99 -28.35 16 15 C 0.18 4.80 5.04 85.63 0.43 5.23 16 16 C -0.16 -3.67 5.26 -19.77 -0.10 -3.77 16 17 C -0.04 -0.75 9.85 22.44 0.22 -0.53 16 18 C -0.18 -3.33 10.04 22.47 0.23 -3.11 16 19 C 0.30 6.73 7.74 84.80 0.66 7.38 16 20 O -0.49 -9.19 13.56 -89.92 -1.22 -10.41 16 21 N -0.53 -13.97 10.39 -308.95 -3.21 -17.18 16 22 C 0.14 3.30 10.85 84.63 0.92 4.21 16 23 N -0.54 -29.66 8.10 -186.00 -1.51 -31.16 16 24 H 0.28 13.18 8.29 -92.71 -0.77 12.41 16 25 H 0.14 6.71 8.06 -2.91 -0.02 6.68 16 26 H 0.15 5.79 6.70 -2.91 -0.02 5.77 16 27 H 0.39 15.03 8.59 -92.72 -0.80 14.23 16 28 H 0.08 1.90 7.88 -2.39 -0.02 1.88 16 29 H 0.08 1.90 7.89 -2.39 -0.02 1.89 16 30 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.42 3.17 9.06 -74.05 -0.67 2.50 16 33 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -69.98 298.23 -1.80 -71.78 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.29 Total: 32.64 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 6.15 Total: 5.52 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -8.47 Total: -138.18 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -1.22 Total: -10.41 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -69.98 -1.80 -71.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157515840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.344 kcal (2) G-P(sol) polarization free energy of solvation -69.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds