Wall clock time and date at job start Mon Mar 30 2020 01:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33101 * 1 3 3 C 1.51294 * 121.24121 * 2 1 4 4 C 1.50717 * 108.78048 * 221.90194 * 3 2 1 5 5 C 1.33250 * 121.22437 * 332.21507 * 4 3 2 6 6 F 1.35100 * 119.09794 * 180.40860 * 5 4 3 7 7 C 1.46145 * 121.79583 * 0.38381 * 5 4 3 8 8 C 1.36220 * 119.65859 * 15.94554 * 7 5 4 9 9 N 1.39140 * 121.21247 * 179.31235 * 8 7 5 10 10 C 1.39135 * 119.99899 * 122.26396 * 9 8 7 11 11 C 1.38749 * 119.66072 * 353.34674 * 10 9 8 12 12 C 1.40798 * 118.66735 * 179.73762 * 11 10 9 13 13 C 1.41540 * 120.99585 * 180.25428 * 12 11 10 14 14 H 1.08004 * 119.99841 * 332.76101 * 13 12 11 15 15 C 1.40029 * 119.99976 * 152.76483 * 13 12 11 16 16 N 1.30745 * 119.99641 * 346.37813 * 15 13 12 17 17 Si 1.86795 * 119.99915 * 166.38450 * 15 13 12 18 18 H 1.48500 * 109.47326 * 89.99575 * 17 15 13 19 19 H 1.48506 * 109.47027 * 209.99635 * 17 15 13 20 20 H 1.48503 * 109.47481 * 329.99665 * 17 15 13 21 21 C 1.41190 * 118.01024 * 0.51275 * 12 11 10 22 22 C 1.36562 * 119.15026 * 359.73952 * 21 12 11 23 23 N 1.32091 * 121.27156 * 359.97438 * 22 21 12 24 24 H 1.07998 * 120.00018 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99870 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.57758 * 102.12468 * 3 2 1 27 27 H 1.08994 * 109.59913 * 341.69816 * 3 2 1 28 28 H 1.07998 * 119.38555 * 152.48735 * 4 3 2 29 29 H 1.08007 * 120.17104 * 195.96610 * 7 5 4 30 30 H 0.97001 * 120.00082 * 302.27221 * 9 8 7 31 31 H 1.08003 * 120.66915 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99285 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.42527 * 179.75733 * 21 12 11 34 34 H 1.07994 * 119.36474 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3310 0.0000 0.0000 3 6 2.1157 1.2936 0.0000 4 6 3.2754 1.1576 -0.9530 5 6 3.8217 -0.0300 -1.2112 6 9 4.8652 -0.1012 -2.0663 7 6 3.3232 -1.2575 -0.5941 8 6 2.0973 -1.2636 -0.0003 9 7 1.5851 -2.4176 0.5844 10 6 1.2242 -2.4154 1.9281 11 6 1.5051 -1.3060 2.7127 12 6 1.1256 -1.3240 4.0685 13 6 1.3831 -0.2171 4.9122 14 1 2.2136 0.4406 4.7018 15 6 0.5611 0.0252 6.0196 16 7 -0.5854 -0.5934 6.1306 17 14 1.1026 1.2324 7.3382 18 1 0.6174 2.5929 6.9933 19 1 0.5356 0.8220 8.6480 20 1 2.5852 1.2421 7.4219 21 6 0.4855 -2.4814 4.5626 22 6 0.2556 -3.5274 3.7153 23 7 0.6197 -3.4750 2.4467 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.4896 1.4940 1.0041 27 1 1.4718 2.1117 -0.3224 28 1 3.6737 2.0397 -1.4322 29 1 3.9238 -2.1550 -0.6086 30 1 1.4798 -3.2238 0.0553 31 1 2.0014 -0.4445 2.2910 32 1 -1.1549 -0.4252 6.8975 33 1 0.1813 -2.5386 5.5972 34 1 -0.2342 -4.4142 4.0895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160716890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:15 Heat of formation + Delta-G solvation = 31.467105 kcal Electronic energy + Delta-G solvation = -19944.240936 eV Core-core repulsion = 16756.868424 eV Total energy + Delta-G solvation = -3187.372511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.63068 -39.25825 -37.77929 -34.93810 -33.80460 -32.01094 -30.72141 -30.01804 -27.71550 -25.96632 -25.79523 -22.71843 -21.44132 -21.19385 -20.08708 -17.95773 -17.41739 -16.33041 -15.83016 -15.74413 -15.34242 -15.18450 -14.90428 -14.27741 -13.97229 -13.79120 -13.35565 -12.96236 -12.87169 -12.77340 -12.45215 -11.97572 -11.68903 -11.48782 -11.23125 -10.99622 -10.91046 -10.41083 -10.36983 -9.96457 -9.56035 -9.30417 -9.20702 -8.09241 -8.03170 -7.64139 -6.89360 -6.67494 -4.63667 0.99004 2.37267 2.72991 2.83694 3.00728 3.04881 3.13455 3.29206 3.72867 3.84616 4.56230 4.63793 4.80181 5.04117 5.16472 5.50734 5.63205 5.66841 5.88568 5.90380 5.96803 6.04040 6.27191 6.39431 6.62308 6.67776 6.75731 6.82903 6.89902 6.94008 7.10026 7.17986 7.42115 7.69834 7.91226 7.98442 8.29230 8.50777 8.74797 8.75628 9.57715 10.06920 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.005659 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.727768 B = 4947.110766 C = 5784.563965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.033 4.033 4 C -0.205 4.205 5 C 0.108 3.892 6 F -0.152 7.152 7 C -0.215 4.215 8 C 0.234 3.766 9 N -0.680 5.680 10 C 0.381 3.619 11 C -0.307 4.307 12 C 0.154 3.846 13 C -0.455 4.455 14 H 0.080 0.920 15 C 0.079 3.921 16 N -0.788 5.788 17 Si 0.910 3.090 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.230 4.230 22 C 0.112 3.888 23 N -0.614 5.614 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.403 0.597 31 H 0.103 0.897 32 H 0.282 0.718 33 H 0.123 0.877 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 3.304 -7.936 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.120 4.120 3 C -0.070 4.070 4 C -0.225 4.225 5 C 0.088 3.912 6 F -0.130 7.130 7 C -0.238 4.238 8 C 0.135 3.865 9 N -0.308 5.308 10 C 0.153 3.847 11 C -0.334 4.334 12 C 0.145 3.855 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.141 4.141 16 N -0.413 5.413 17 Si 0.734 3.266 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.254 4.254 22 C -0.038 4.038 23 N -0.335 5.335 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.240 0.760 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.266 2.626 -8.256 8.955 hybrid contribution 0.413 0.850 0.843 1.267 sum 2.679 3.476 -7.413 8.614 Atomic orbital electron populations 1.24218 0.94402 1.02336 0.96416 1.20993 0.94658 0.93042 1.03296 1.19510 0.93850 0.94657 0.98949 1.23197 1.00409 0.96092 1.02814 1.17878 0.86897 0.94179 0.92258 1.91451 1.56097 1.97294 1.68189 1.21882 0.95061 0.97456 1.09420 1.18421 0.90162 0.86313 0.91593 1.41438 1.69795 1.11073 1.08544 1.17841 0.92908 0.91240 0.82729 1.21296 1.18189 0.99221 0.94657 1.17623 0.86294 0.91703 0.89863 1.19561 1.12166 1.09614 1.07266 0.90182 1.25939 0.93701 0.96246 0.98174 1.69774 1.07597 1.36009 1.27914 0.86274 0.80397 0.80353 0.79544 1.19344 1.19965 1.18350 1.21820 1.08439 0.94156 1.00994 1.21369 0.96901 0.97294 0.88201 1.66671 1.23062 1.27763 1.16053 0.87932 0.87521 0.88712 0.89422 0.85703 0.85285 0.76012 0.87904 0.90656 0.85875 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 13.81 28.95 0.40 -1.71 16 2 C -0.12 -1.87 3.75 -102.22 -0.38 -2.25 16 3 C -0.03 -0.44 6.22 -28.74 -0.18 -0.62 16 4 C -0.21 -2.72 10.03 -36.04 -0.36 -3.08 16 5 C 0.11 1.60 7.26 -38.15 -0.28 1.32 16 6 F -0.15 -2.26 17.23 2.25 0.04 -2.22 16 7 C -0.21 -3.38 10.17 -37.14 -0.38 -3.75 16 8 C 0.23 3.95 5.15 -81.37 -0.42 3.53 16 9 N -0.68 -12.57 5.13 -8.48 -0.04 -12.61 16 10 C 0.38 8.58 7.37 -154.90 -1.14 7.43 16 11 C -0.31 -7.39 8.65 -38.43 -0.33 -7.72 16 12 C 0.15 3.99 5.57 -106.55 -0.59 3.39 16 13 C -0.45 -11.61 9.12 -37.65 -0.34 -11.95 16 14 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 15 C 0.08 1.89 5.24 -17.34 -0.09 1.80 16 16 N -0.79 -19.49 10.98 55.55 0.61 -18.88 16 17 Si 0.91 17.87 29.58 -169.99 -5.03 12.85 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.23 -5.82 8.71 -39.07 -0.34 -6.16 16 22 C 0.11 2.63 11.10 -18.05 -0.20 2.43 16 23 N -0.61 -14.41 10.37 -12.80 -0.13 -14.54 16 24 H 0.10 1.71 7.88 -52.49 -0.41 1.29 16 25 H 0.11 1.40 8.03 -52.49 -0.42 0.98 16 26 H 0.10 1.36 8.06 -51.93 -0.42 0.94 16 27 H 0.09 0.97 8.01 -51.93 -0.42 0.56 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.40 6.71 8.95 -40.82 -0.37 6.34 16 31 H 0.10 2.38 6.02 -52.48 -0.32 2.07 16 32 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 33 H 0.12 3.17 6.35 -52.49 -0.33 2.83 16 34 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -27.31 300.37 -8.17 -35.47 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -3.50 Total: 12.75 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -4.64 Total: -17.35 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.43 Total: -46.03 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.31 -8.17 -35.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160716890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.940 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds