Wall clock time and date at job start Mon Mar 30 2020 01:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33101 * 1 3 3 C 1.51294 * 121.24121 * 2 1 4 4 C 1.50717 * 108.78048 * 221.90194 * 3 2 1 5 5 C 1.33250 * 121.22437 * 332.21507 * 4 3 2 6 6 F 1.35100 * 119.09794 * 180.40860 * 5 4 3 7 7 C 1.46145 * 121.79583 * 0.38381 * 5 4 3 8 8 C 1.36220 * 119.65859 * 15.94554 * 7 5 4 9 9 N 1.39140 * 121.21247 * 179.31235 * 8 7 5 10 10 C 1.39135 * 119.99899 * 122.26396 * 9 8 7 11 11 C 1.38749 * 119.66072 * 353.34674 * 10 9 8 12 12 C 1.40798 * 118.66735 * 179.73762 * 11 10 9 13 13 C 1.41540 * 120.99585 * 180.25428 * 12 11 10 14 14 H 1.08004 * 119.99841 * 332.76101 * 13 12 11 15 15 C 1.40029 * 119.99976 * 152.76483 * 13 12 11 16 16 N 1.30745 * 119.99641 * 346.37813 * 15 13 12 17 17 Si 1.86795 * 119.99915 * 166.38450 * 15 13 12 18 18 H 1.48500 * 109.47326 * 89.99575 * 17 15 13 19 19 H 1.48506 * 109.47027 * 209.99635 * 17 15 13 20 20 H 1.48503 * 109.47481 * 329.99665 * 17 15 13 21 21 C 1.41190 * 118.01024 * 0.51275 * 12 11 10 22 22 C 1.36562 * 119.15026 * 359.73952 * 21 12 11 23 23 N 1.32091 * 121.27156 * 359.97438 * 22 21 12 24 24 H 1.07998 * 120.00018 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99870 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.57758 * 102.12468 * 3 2 1 27 27 H 1.08994 * 109.59913 * 341.69816 * 3 2 1 28 28 H 1.07998 * 119.38555 * 152.48735 * 4 3 2 29 29 H 1.08007 * 120.17104 * 195.96610 * 7 5 4 30 30 H 0.97001 * 120.00082 * 302.27221 * 9 8 7 31 31 H 1.08003 * 120.66915 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99285 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.42527 * 179.75733 * 21 12 11 34 34 H 1.07994 * 119.36474 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3310 0.0000 0.0000 3 6 2.1157 1.2936 0.0000 4 6 3.2754 1.1576 -0.9530 5 6 3.8217 -0.0300 -1.2112 6 9 4.8652 -0.1012 -2.0663 7 6 3.3232 -1.2575 -0.5941 8 6 2.0973 -1.2636 -0.0003 9 7 1.5851 -2.4176 0.5844 10 6 1.2242 -2.4154 1.9281 11 6 1.5051 -1.3060 2.7127 12 6 1.1256 -1.3240 4.0685 13 6 1.3831 -0.2171 4.9122 14 1 2.2136 0.4406 4.7018 15 6 0.5611 0.0252 6.0196 16 7 -0.5854 -0.5934 6.1306 17 14 1.1026 1.2324 7.3382 18 1 0.6174 2.5929 6.9933 19 1 0.5356 0.8220 8.6480 20 1 2.5852 1.2421 7.4219 21 6 0.4855 -2.4814 4.5626 22 6 0.2556 -3.5274 3.7153 23 7 0.6197 -3.4750 2.4467 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.4896 1.4940 1.0041 27 1 1.4718 2.1117 -0.3224 28 1 3.6737 2.0397 -1.4322 29 1 3.9238 -2.1550 -0.6086 30 1 1.4798 -3.2238 0.0553 31 1 2.0014 -0.4445 2.2910 32 1 -1.1549 -0.4252 6.8975 33 1 0.1813 -2.5386 5.5972 34 1 -0.2342 -4.4142 4.0895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160716890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:15 Heat of formation + Delta-G solvation = 18.351252 kcal Electronic energy + Delta-G solvation = -19944.809682 eV Core-core repulsion = 16756.868424 eV Total energy + Delta-G solvation = -3187.941258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.76198 -40.82465 -39.27197 -36.49650 -35.49792 -33.21148 -32.55905 -31.48587 -29.29585 -27.83656 -26.97909 -24.16087 -23.21236 -22.73992 -21.37379 -19.60051 -18.83584 -17.91309 -17.23501 -16.89809 -16.79389 -16.51387 -16.45741 -15.98635 -15.47062 -15.23222 -14.88495 -14.51109 -14.28399 -14.12744 -13.98614 -13.28939 -13.14812 -12.88344 -12.83383 -12.75445 -12.22083 -11.99539 -11.81555 -11.64747 -11.25734 -10.87846 -10.41121 -9.93994 -9.91359 -8.98629 -8.66706 -8.29942 -6.55432 -0.22628 0.94487 1.08937 1.20156 1.40990 1.53022 1.58048 1.87712 2.20387 2.34351 2.80897 3.40833 3.63215 3.78361 3.84854 4.00943 4.20526 4.39784 4.50523 4.73966 4.79599 4.81326 4.85231 4.97662 5.04546 5.09496 5.17772 5.26067 5.29241 5.50655 5.55996 5.67299 5.85788 5.92099 6.06215 6.38889 6.51938 6.77841 6.86140 6.90234 7.76244 8.29278 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.005659 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.727768 B = 4947.110766 C = 5784.563965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.035 4.035 4 C -0.174 4.174 5 C 0.078 3.922 6 F -0.153 7.153 7 C -0.196 4.196 8 C 0.200 3.800 9 N -0.672 5.672 10 C 0.387 3.613 11 C -0.321 4.321 12 C 0.127 3.873 13 C -0.485 4.485 14 H 0.079 0.921 15 C 0.042 3.958 16 N -0.815 5.815 17 Si 0.983 3.017 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.254 4.254 22 C 0.112 3.888 23 N -0.623 5.623 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.410 0.590 31 H 0.106 0.894 32 H 0.291 0.709 33 H 0.112 0.888 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 4.969 -8.324 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.129 4.129 3 C -0.072 4.072 4 C -0.193 4.193 5 C 0.058 3.942 6 F -0.132 7.132 7 C -0.219 4.219 8 C 0.103 3.897 9 N -0.301 5.301 10 C 0.158 3.842 11 C -0.347 4.347 12 C 0.119 3.881 13 C -0.516 4.516 14 H 0.098 0.902 15 C -0.176 4.176 16 N -0.441 5.441 17 Si 0.803 3.197 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.183 1.183 21 C -0.279 4.279 22 C -0.037 4.037 23 N -0.346 5.346 24 H 0.102 0.898 25 H 0.148 0.852 26 H 0.107 0.893 27 H 0.138 0.862 28 H 0.173 0.827 29 H 0.151 0.849 30 H 0.248 0.752 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.783 4.293 -8.700 10.093 hybrid contribution 0.291 0.326 0.844 0.951 sum 3.074 4.619 -7.856 9.618 Atomic orbital electron populations 1.24317 0.94534 1.02613 0.96626 1.21203 0.94945 0.93527 1.03258 1.19653 0.94245 0.94437 0.98834 1.23533 0.98627 0.96514 1.00620 1.17891 0.88102 0.94323 0.93880 1.91448 1.56149 1.97291 1.68317 1.22069 0.94303 0.98168 1.07340 1.18639 0.91143 0.86491 0.93459 1.41314 1.69496 1.12186 1.07150 1.18022 0.91547 0.90452 0.84180 1.21318 1.19019 1.00072 0.94324 1.18004 0.86884 0.92268 0.90948 1.19812 1.12926 1.10071 1.08769 0.90241 1.26770 0.93252 0.97867 0.99665 1.69822 1.08424 1.37044 1.28793 0.85185 0.79774 0.78062 0.76646 1.18397 1.18998 1.18310 1.21782 1.10255 0.94994 1.00839 1.21756 0.96134 0.97691 0.88152 1.66816 1.23668 1.28136 1.15974 0.89818 0.85183 0.89267 0.86249 0.82735 0.84942 0.75184 0.87576 0.89796 0.87027 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 13.81 66.67 0.92 -3.42 16 2 C -0.13 -3.89 3.75 -18.30 -0.07 -3.96 16 3 C -0.04 -0.86 6.22 29.30 0.18 -0.67 16 4 C -0.17 -4.05 10.03 24.56 0.25 -3.80 16 5 C 0.08 2.14 7.26 23.20 0.17 2.31 16 6 F -0.15 -4.26 17.23 44.97 0.78 -3.48 16 7 C -0.20 -5.95 10.17 23.85 0.24 -5.70 16 8 C 0.20 6.63 5.15 40.04 0.21 6.83 16 9 N -0.67 -24.83 5.13 -180.73 -0.93 -25.76 16 10 C 0.39 17.59 7.37 132.88 0.98 18.57 16 11 C -0.32 -15.68 8.65 23.02 0.20 -15.48 16 12 C 0.13 6.76 5.57 -21.11 -0.12 6.64 16 13 C -0.49 -25.17 9.12 23.52 0.21 -24.96 16 14 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 15 C 0.04 1.99 5.24 85.29 0.45 2.44 16 16 N -0.82 -40.70 10.98 21.84 0.24 -40.46 16 17 Si 0.98 36.16 29.58 68.60 2.03 38.19 16 18 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 19 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 C -0.25 -13.20 8.71 22.60 0.20 -13.00 16 22 C 0.11 5.33 11.10 84.26 0.94 6.27 16 23 N -0.62 -29.41 10.37 -194.41 -2.02 -31.43 16 24 H 0.08 2.81 7.88 -2.91 -0.02 2.79 16 25 H 0.13 3.19 8.03 -2.91 -0.02 3.16 16 26 H 0.09 2.38 8.06 -2.38 -0.02 2.36 16 27 H 0.12 2.19 8.01 -2.39 -0.02 2.17 16 28 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.41 13.63 8.95 -92.71 -0.83 12.80 16 31 H 0.11 4.98 6.02 -2.91 -0.02 4.96 16 32 H 0.29 13.06 8.29 -92.71 -0.77 12.29 16 33 H 0.11 5.94 6.35 -2.91 -0.02 5.92 16 34 H 0.15 6.01 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -58.88 300.37 5.16 -53.72 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.31 Total: 37.15 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 4.75 Total: -27.92 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -2.70 Total: -97.65 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -58.88 5.16 -53.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160716890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.068 kcal (2) G-P(sol) polarization free energy of solvation -58.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds