Wall clock time and date at job start Mon Mar 30 2020 01:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35621 * 116.99905 * 2 1 4 4 C 1.39161 * 120.50165 * 0.23451 * 3 2 1 5 5 C 1.38305 * 118.62639 * 180.27336 * 4 3 2 6 6 C 1.39947 * 119.59430 * 359.74040 * 5 4 3 7 7 N 1.38904 * 119.49532 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00236 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47226 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46863 * 180.02562 * 9 8 7 11 11 F 1.39899 * 109.46969 * 299.99718 * 9 8 7 12 12 F 1.39894 * 109.47292 * 60.00387 * 9 8 7 13 13 N 1.31862 * 121.01049 * 0.02562 * 6 5 4 14 14 C 1.33829 * 121.47124 * 359.97438 * 13 6 5 15 15 C 1.40912 * 119.84965 * 179.97438 * 14 13 6 16 16 H 1.08004 * 119.99908 * 170.16173 * 15 14 13 17 17 C 1.40025 * 119.99865 * 349.89443 * 15 14 13 18 18 N 1.30779 * 120.00010 * 164.16703 * 17 15 14 19 19 Si 1.86799 * 120.00001 * 344.15695 * 17 15 14 20 20 H 1.48500 * 109.47010 * 90.00404 * 19 17 15 21 21 H 1.48504 * 109.47421 * 210.00436 * 19 17 15 22 22 H 1.48498 * 109.47096 * 330.00457 * 19 17 15 23 23 H 1.08994 * 109.47105 * 299.99849 * 1 2 3 24 24 H 1.08998 * 109.47118 * 60.00396 * 1 2 3 25 25 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.68680 * 359.97438 * 4 3 2 27 27 H 1.07996 * 120.20489 * 179.77155 * 5 4 3 28 28 H 0.97001 * 120.00158 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46926 * 300.00868 * 8 7 6 30 30 H 1.09001 * 109.46844 * 60.00029 * 8 7 6 31 31 H 1.08995 * 109.46804 * 59.99941 * 10 9 8 32 32 H 1.08998 * 109.46807 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.46602 * 300.00035 * 10 9 8 34 34 H 0.96998 * 120.00293 * 2.91311 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2970 2.3821 0.0049 5 6 1.9648 3.5932 -0.0011 6 6 3.3642 3.6108 -0.0063 7 7 4.0328 4.8283 -0.0128 8 6 3.2733 6.0812 -0.0137 9 6 4.2425 7.2650 -0.0220 10 6 3.4492 8.5735 -0.0222 11 9 5.0532 7.2120 1.1169 12 9 5.0430 7.2044 -1.1676 13 7 4.0577 2.4893 -0.0061 14 6 3.4544 1.2947 -0.0005 15 6 4.2291 0.1177 -0.0010 16 1 3.7569 -0.8397 0.1633 17 6 5.6103 0.1887 -0.2202 18 7 6.3731 -0.8304 0.0794 19 14 6.3631 1.7391 -0.9407 20 1 6.7410 2.6629 0.1588 21 1 7.5722 1.3835 -1.7260 22 1 5.3745 2.4034 -1.8276 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2176 2.3479 0.0084 27 1 1.4099 4.5197 -0.0012 28 1 5.0026 4.8491 -0.0169 29 1 2.6419 6.1226 -0.9011 30 1 2.6493 6.1283 0.8788 31 1 2.8258 8.6204 0.8707 32 1 4.1397 9.4169 -0.0276 33 1 2.8173 8.6149 -0.9092 34 1 5.9777 -1.6506 0.4137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162230978.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:20 Heat of formation + Delta-G solvation = -138.194479 kcal Electronic energy + Delta-G solvation = -21045.820174 eV Core-core repulsion = 17420.321360 eV Total energy + Delta-G solvation = -3625.498815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.99663 -48.01086 -40.97613 -38.93582 -36.88386 -35.44513 -33.06868 -32.73830 -30.71783 -28.18829 -27.28183 -26.55132 -23.61289 -22.84618 -22.13426 -20.35036 -18.86340 -18.66389 -18.43655 -17.75287 -17.15986 -16.82903 -16.40757 -15.88756 -15.60582 -15.38398 -15.29234 -14.84396 -14.65049 -14.37216 -14.16913 -14.00964 -13.84595 -13.66157 -13.34320 -13.31165 -13.05985 -12.82012 -12.33490 -12.18468 -12.03004 -11.85572 -11.58019 -11.13098 -10.42978 -10.30199 -9.81777 -9.29420 -8.38660 -6.59380 0.70806 0.97936 1.52780 1.66822 1.93889 2.20287 2.40737 2.64931 2.71546 2.90574 3.14645 3.43518 3.61654 3.63700 4.10391 4.31796 4.38049 4.41529 4.48407 4.49705 4.64292 4.65000 4.67648 4.74208 4.84505 5.05836 5.27022 5.41427 5.47815 5.63606 5.96169 6.03998 6.37863 6.55450 6.63400 7.07422 7.71454 7.95798 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.006765 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.932353 B = 4137.758157 C = 5508.909119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.343 6.343 3 C -0.086 4.086 4 C -0.094 4.094 5 C -0.317 4.317 6 C 0.396 3.604 7 N -0.743 5.743 8 C 0.094 3.906 9 C 0.270 3.730 10 C -0.182 4.182 11 F -0.213 7.213 12 F -0.213 7.213 13 N -0.619 5.619 14 C 0.261 3.739 15 C -0.498 4.498 16 H 0.065 0.935 17 C 0.023 3.977 18 N -0.827 5.827 19 Si 1.179 2.821 20 H -0.286 1.286 21 H -0.322 1.322 22 H -0.287 1.287 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.393 0.607 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.656 16.989 -0.648 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C -0.133 4.133 4 C -0.118 4.118 5 C -0.342 4.342 6 C 0.161 3.839 7 N -0.379 5.379 8 C -0.030 4.030 9 C 0.234 3.766 10 C -0.239 4.239 11 F -0.194 7.194 12 F -0.194 7.194 13 N -0.348 5.348 14 C 0.134 3.866 15 C -0.531 4.531 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.450 5.450 19 Si 1.010 2.990 20 H -0.213 1.213 21 H -0.255 1.255 22 H -0.215 1.215 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.125 0.875 26 H 0.166 0.834 27 H 0.165 0.835 28 H 0.226 0.774 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.454 17.502 -1.016 19.463 hybrid contribution -1.713 -1.460 0.678 2.351 sum -10.167 16.042 -0.338 18.996 Atomic orbital electron populations 1.23097 0.78365 1.04200 1.01206 1.85895 1.21697 1.27287 1.90836 1.19802 0.92473 0.85169 1.15881 1.21232 0.99751 0.90955 0.99866 1.20760 0.91202 0.98590 1.23680 1.18396 0.89428 0.84984 0.91112 1.44146 1.08218 1.01949 1.83578 1.22588 0.93971 0.80293 1.06198 1.21908 0.83801 1.00123 0.70775 1.22756 1.01489 0.91968 1.07731 1.93015 1.76481 1.97723 1.52209 1.93013 1.76999 1.97698 1.51678 1.66266 1.38394 0.97614 1.32567 1.17810 0.88316 0.90032 0.90410 1.20461 0.94851 0.93589 1.44223 0.91692 1.28369 0.94514 1.05404 0.91133 1.70647 1.39679 1.04706 1.29981 0.81638 0.71480 0.69779 0.76121 1.21349 1.25455 1.21496 0.92681 0.92587 0.87509 0.83399 0.83485 0.77371 0.87478 0.87455 0.86993 0.89092 0.86964 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.83 113.37 1.11 1.92 16 2 O -0.34 -15.67 9.64 -89.33 -0.86 -16.53 16 3 C -0.09 -4.14 6.74 23.23 0.16 -3.98 16 4 C -0.09 -3.66 9.12 22.51 0.21 -3.45 16 5 C -0.32 -11.77 9.33 22.70 0.21 -11.56 16 6 C 0.40 17.13 7.65 133.46 1.02 18.15 16 7 N -0.74 -26.48 5.58 -344.84 -1.93 -28.40 16 8 C 0.09 2.16 4.39 86.38 0.38 2.54 16 9 C 0.27 5.70 2.06 30.60 0.06 5.76 16 10 C -0.18 -1.95 9.38 71.98 0.68 -1.28 16 11 F -0.21 -5.63 16.92 44.97 0.76 -4.87 16 12 F -0.21 -5.60 16.92 44.97 0.76 -4.84 16 13 N -0.62 -32.27 5.13 -186.18 -0.95 -33.23 16 14 C 0.26 14.43 6.26 40.23 0.25 14.68 16 15 C -0.50 -29.70 9.28 23.36 0.22 -29.48 16 16 H 0.06 4.05 7.57 -2.91 -0.02 4.03 16 17 C 0.02 1.35 5.51 85.28 0.47 1.82 16 18 N -0.83 -48.36 13.65 21.84 0.30 -48.06 16 19 Si 1.18 60.57 25.92 68.60 1.78 62.34 16 20 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 22 H -0.29 -14.88 6.58 99.48 0.65 -14.22 16 23 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 24 H 0.06 1.50 7.70 -2.39 -0.02 1.49 16 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.15 4.50 6.43 -2.91 -0.02 4.48 16 27 H 0.15 4.08 6.67 -2.91 -0.02 4.06 16 28 H 0.39 15.06 8.48 -92.71 -0.79 14.28 16 29 H 0.11 2.04 7.91 -2.39 -0.02 2.02 16 30 H 0.11 2.04 7.92 -2.39 -0.02 2.02 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.28 16.00 8.72 -92.71 -0.81 15.19 16 Total: -1.00 -72.48 295.77 4.88 -67.59 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.26 Total: 10.88 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 4.77 Total: -4.89 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -2.58 Total: -109.69 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.86 Total: -16.53 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 1.52 Total: -9.71 kcal Atomic # 14 Polarization: 60.57 SS G_CDS: 1.78 Total: 62.34 kcal Total: -72.48 4.88 -67.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162230978.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.601 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds