Wall clock time and date at job start Mon Mar 30 2020 01:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35016 * 119.56435 * 2 1 4 4 N 1.33231 * 121.72928 * 179.74214 * 3 2 1 5 5 C 1.31599 * 120.75123 * 0.57080 * 4 3 2 6 6 N 1.38966 * 120.45685 * 179.72103 * 5 4 3 7 7 C 1.39171 * 119.99574 * 3.69261 * 6 5 4 8 8 C 1.38741 * 119.65927 * 183.91787 * 7 6 5 9 9 C 1.40788 * 118.66720 * 180.02562 * 8 7 6 10 10 C 1.41552 * 120.99334 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99442 * 335.35993 * 10 9 8 12 12 C 1.40025 * 120.00064 * 155.35006 * 10 9 8 13 13 N 1.30743 * 120.00240 * 162.35963 * 12 10 9 14 14 Si 1.86805 * 120.00291 * 342.37023 * 12 10 9 15 15 H 1.48494 * 109.47031 * 94.79935 * 14 12 10 16 16 H 1.48503 * 109.47080 * 214.80231 * 14 12 10 17 17 H 1.48498 * 109.46596 * 334.79904 * 14 12 10 18 18 C 1.41178 * 118.01611 * 359.97438 * 9 8 7 19 19 C 1.36573 * 119.14618 * 0.02562 * 18 9 8 20 20 N 1.32081 * 121.27082 * 0.02562 * 19 18 9 21 21 C 1.46710 * 119.09694 * 359.44510 * 5 4 3 22 22 O 1.21941 * 120.78918 * 180.25723 * 21 5 4 23 23 N 1.35177 * 118.42101 * 0.27279 * 21 5 4 24 24 H 0.97000 * 120.43720 * 180.02562 * 23 21 5 25 25 H 1.09003 * 109.47481 * 269.97783 * 1 2 3 26 26 H 1.08998 * 109.47134 * 29.97925 * 1 2 3 27 27 H 1.08998 * 109.47378 * 149.97643 * 1 2 3 28 28 H 1.07998 * 119.13618 * 0.04793 * 3 2 1 29 29 H 0.96989 * 120.00647 * 183.70045 * 6 5 4 30 30 H 1.08007 * 120.66350 * 0.26983 * 8 7 6 31 31 H 0.96999 * 120.00864 * 180.02562 * 13 12 10 32 32 H 1.07997 * 120.43129 * 179.97438 * 18 9 8 33 33 H 1.08003 * 119.37033 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1732 1.1744 0.0000 4 7 3.5045 1.2247 0.0051 5 6 4.2197 0.1200 -0.0009 6 7 5.6081 0.1797 -0.0014 7 6 6.2516 1.4109 0.0822 8 6 7.6353 1.4693 -0.0009 9 6 8.2647 2.7257 0.0866 10 6 9.6732 2.8423 0.0084 11 1 10.3000 2.0045 0.2758 12 6 10.2537 4.0438 -0.4159 13 7 11.5152 4.2833 -0.1693 14 14 9.2259 5.3048 -1.3340 15 1 8.6969 6.3062 -0.3736 16 1 10.0696 5.9881 -2.3472 17 1 8.0941 4.6224 -2.0112 18 6 7.4491 3.8657 0.2548 19 6 6.0942 3.7095 0.3261 20 7 5.5362 2.5154 0.2413 21 6 3.5313 -1.1755 -0.0010 22 8 4.1634 -2.2183 -0.0017 23 7 2.1795 -1.1858 -0.0004 24 1 1.6945 -2.0259 -0.0001 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6121 2.0972 0.0008 29 1 6.1286 -0.6366 -0.0600 30 1 8.2176 0.5695 -0.1341 31 1 11.9173 5.1158 -0.4629 32 1 7.8908 4.8485 0.3269 33 1 5.4668 4.5792 0.4551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162714942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:27 Heat of formation + Delta-G solvation = 50.673337 kcal Electronic energy + Delta-G solvation = -19758.345156 eV Core-core repulsion = 16591.725450 eV Total energy + Delta-G solvation = -3166.619705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24377 -38.87052 -37.51867 -36.23509 -34.06496 -33.38190 -31.60389 -31.24818 -29.11676 -26.53500 -25.77230 -24.58684 -22.61675 -21.96373 -21.06902 -18.70903 -18.58093 -17.36709 -16.45014 -15.91831 -15.86263 -15.79900 -15.17989 -14.21580 -14.09690 -13.84087 -13.77915 -13.41487 -13.12386 -13.09456 -12.83118 -12.79734 -12.20980 -11.65566 -11.33100 -11.14634 -11.02560 -10.82003 -10.62697 -10.01560 -9.74025 -9.38031 -8.98751 -8.24459 -7.94026 -7.79446 -7.06426 -6.70005 -4.71073 0.90912 1.87259 2.52711 2.56482 2.73388 3.09396 3.20302 3.30944 3.46016 3.89808 3.92743 4.21130 4.59588 4.61001 4.87982 4.94450 5.21523 5.47140 5.55965 5.59311 5.67405 5.97395 6.29104 6.46314 6.50030 6.56860 6.62683 6.65355 7.01382 7.19426 7.32701 7.53392 7.68580 7.80673 8.10500 8.25917 8.43431 8.51049 8.68543 9.49379 9.94598 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036859 B = 0.004434 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.464067 B = 6313.582016 C = 6920.188404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.016 3.984 3 C 0.022 3.978 4 N -0.416 5.416 5 C 0.325 3.675 6 N -0.614 5.614 7 C 0.370 3.630 8 C -0.298 4.298 9 C 0.130 3.870 10 C -0.435 4.435 11 H 0.093 0.907 12 C 0.086 3.914 13 N -0.797 5.797 14 Si 0.921 3.079 15 H -0.268 1.268 16 H -0.293 1.293 17 H -0.243 1.243 18 C -0.306 4.306 19 C 0.141 3.859 20 N -0.549 5.549 21 C 0.487 3.513 22 O -0.543 6.543 23 N -0.588 5.588 24 H 0.414 0.586 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.164 0.836 29 H 0.426 0.574 30 H 0.108 0.892 31 H 0.288 0.712 32 H 0.106 0.894 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 -4.604 -0.810 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.119 4.119 4 N -0.139 5.139 5 C 0.061 3.939 6 N -0.242 5.242 7 C 0.143 3.857 8 C -0.325 4.325 9 C 0.122 3.878 10 C -0.465 4.465 11 H 0.111 0.889 12 C -0.136 4.136 13 N -0.421 5.421 14 Si 0.748 3.252 15 H -0.195 1.195 16 H -0.221 1.221 17 H -0.167 1.167 18 C -0.330 4.330 19 C -0.012 4.012 20 N -0.268 5.268 21 C 0.277 3.723 22 O -0.420 6.420 23 N -0.227 5.227 24 H 0.253 0.747 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.265 0.735 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.644 -4.143 -0.741 18.139 hybrid contribution 0.261 -0.756 -0.379 0.885 sum -17.383 -4.899 -1.120 18.095 Atomic orbital electron populations 1.20773 0.88459 1.03881 1.03225 1.21073 0.95511 0.86050 1.06607 1.21654 0.89688 0.95890 1.04663 1.68231 1.05197 1.26741 1.13728 1.21140 0.87137 0.87210 0.98403 1.41740 1.00983 1.08189 1.73299 1.17987 0.87851 0.84808 0.95008 1.21089 0.91289 0.98793 1.21328 1.17611 0.93376 0.90240 0.86619 1.19514 0.90206 0.99137 1.37621 0.88888 1.26239 0.95263 0.98434 0.93618 1.69640 1.13448 1.24986 1.34011 0.86201 0.80115 0.79557 0.79311 1.19465 1.22072 1.16656 1.21609 0.95255 0.98750 1.17398 1.21490 0.91988 0.93479 0.94239 1.67268 1.38091 0.96819 1.24597 1.19206 0.82028 0.90711 0.80393 1.90962 1.64733 1.33923 1.52420 1.43193 1.07147 1.09359 1.62958 0.74709 0.90433 0.89496 0.91417 0.81875 0.73514 0.87374 0.90112 0.87682 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.09 36.01 0.36 -0.23 16 2 C 0.02 0.17 6.79 -81.74 -0.55 -0.39 16 3 C 0.02 0.29 10.63 -18.09 -0.19 0.09 16 4 N -0.42 -7.46 7.87 -11.01 -0.09 -7.55 16 5 C 0.32 5.88 7.69 -152.65 -1.17 4.71 16 6 N -0.61 -11.89 5.53 -9.80 -0.05 -11.94 16 7 C 0.37 8.32 7.43 -154.87 -1.15 7.17 16 8 C -0.30 -7.01 9.74 -38.43 -0.37 -7.39 16 9 C 0.13 3.28 5.26 -106.55 -0.56 2.72 16 10 C -0.43 -11.55 9.66 -37.65 -0.36 -11.91 16 11 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 12 C 0.09 2.19 5.45 -17.35 -0.09 2.10 16 13 N -0.80 -20.66 13.92 55.55 0.77 -19.88 16 14 Si 0.92 20.45 24.40 -169.99 -4.15 16.30 16 15 H -0.27 -5.72 6.66 56.52 0.38 -5.35 16 16 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.24 -5.61 6.67 56.52 0.38 -5.23 16 18 C -0.31 -7.33 7.16 -39.07 -0.28 -7.61 16 19 C 0.14 3.16 11.10 -18.05 -0.20 2.96 16 20 N -0.55 -12.57 7.74 -12.79 -0.10 -12.67 16 21 C 0.49 7.69 7.96 -12.66 -0.10 7.59 16 22 O -0.54 -9.69 17.47 4.97 0.09 -9.60 16 23 N -0.59 -6.71 5.35 -9.38 -0.05 -6.76 16 24 H 0.41 3.47 8.84 -40.82 -0.36 3.11 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.40 8.06 -51.93 -0.42 -0.02 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.16 1.72 8.04 -52.49 -0.42 1.30 16 29 H 0.43 7.42 8.29 -40.82 -0.34 7.08 16 30 H 0.11 2.36 8.06 -52.48 -0.42 1.93 16 31 H 0.29 6.72 8.29 -40.82 -0.34 6.38 16 32 H 0.11 2.46 4.08 -52.49 -0.21 2.24 16 33 H 0.13 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 287.74 15.07 4.34 4.34 Total: -1.00 -31.39 287.74 -6.98 -38.37 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -3.05 Total: 9.57 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -4.68 Total: -0.18 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.48 Total: -58.80 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.15 Total: 16.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.39 -6.98 -38.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162714942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.043 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds