Wall clock time and date at job start Mon Mar 30 2020 01:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35016 * 119.56435 * 2 1 4 4 N 1.33231 * 121.72928 * 179.74214 * 3 2 1 5 5 C 1.31599 * 120.75123 * 0.57080 * 4 3 2 6 6 N 1.38966 * 120.45685 * 179.72103 * 5 4 3 7 7 C 1.39171 * 119.99574 * 3.69261 * 6 5 4 8 8 C 1.38741 * 119.65927 * 183.91787 * 7 6 5 9 9 C 1.40788 * 118.66720 * 180.02562 * 8 7 6 10 10 C 1.41552 * 120.99334 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99442 * 335.35993 * 10 9 8 12 12 C 1.40025 * 120.00064 * 155.35006 * 10 9 8 13 13 N 1.30743 * 120.00240 * 162.35963 * 12 10 9 14 14 Si 1.86805 * 120.00291 * 342.37023 * 12 10 9 15 15 H 1.48494 * 109.47031 * 94.79935 * 14 12 10 16 16 H 1.48503 * 109.47080 * 214.80231 * 14 12 10 17 17 H 1.48498 * 109.46596 * 334.79904 * 14 12 10 18 18 C 1.41178 * 118.01611 * 359.97438 * 9 8 7 19 19 C 1.36573 * 119.14618 * 0.02562 * 18 9 8 20 20 N 1.32081 * 121.27082 * 0.02562 * 19 18 9 21 21 C 1.46710 * 119.09694 * 359.44510 * 5 4 3 22 22 O 1.21941 * 120.78918 * 180.25723 * 21 5 4 23 23 N 1.35177 * 118.42101 * 0.27279 * 21 5 4 24 24 H 0.97000 * 120.43720 * 180.02562 * 23 21 5 25 25 H 1.09003 * 109.47481 * 269.97783 * 1 2 3 26 26 H 1.08998 * 109.47134 * 29.97925 * 1 2 3 27 27 H 1.08998 * 109.47378 * 149.97643 * 1 2 3 28 28 H 1.07998 * 119.13618 * 0.04793 * 3 2 1 29 29 H 0.96989 * 120.00647 * 183.70045 * 6 5 4 30 30 H 1.08007 * 120.66350 * 0.26983 * 8 7 6 31 31 H 0.96999 * 120.00864 * 180.02562 * 13 12 10 32 32 H 1.07997 * 120.43129 * 179.97438 * 18 9 8 33 33 H 1.08003 * 119.37033 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1732 1.1744 0.0000 4 7 3.5045 1.2247 0.0051 5 6 4.2197 0.1200 -0.0009 6 7 5.6081 0.1797 -0.0014 7 6 6.2516 1.4109 0.0822 8 6 7.6353 1.4693 -0.0009 9 6 8.2647 2.7257 0.0866 10 6 9.6732 2.8423 0.0084 11 1 10.3000 2.0045 0.2758 12 6 10.2537 4.0438 -0.4159 13 7 11.5152 4.2833 -0.1693 14 14 9.2259 5.3048 -1.3340 15 1 8.6969 6.3062 -0.3736 16 1 10.0696 5.9881 -2.3472 17 1 8.0941 4.6224 -2.0112 18 6 7.4491 3.8657 0.2548 19 6 6.0942 3.7095 0.3261 20 7 5.5362 2.5154 0.2413 21 6 3.5313 -1.1755 -0.0010 22 8 4.1634 -2.2183 -0.0017 23 7 2.1795 -1.1858 -0.0004 24 1 1.6945 -2.0259 -0.0001 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6121 2.0972 0.0008 29 1 6.1286 -0.6366 -0.0600 30 1 8.2176 0.5695 -0.1341 31 1 11.9173 5.1158 -0.4629 32 1 7.8908 4.8485 0.3269 33 1 5.4668 4.5792 0.4551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162714942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:27 Heat of formation + Delta-G solvation = 28.632896 kcal Electronic energy + Delta-G solvation = -19759.300901 eV Core-core repulsion = 16591.725450 eV Total energy + Delta-G solvation = -3167.575450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41601 -40.58556 -38.71109 -37.65261 -35.82254 -34.81181 -33.11892 -32.52414 -30.68495 -28.02270 -27.24492 -25.80543 -23.78943 -23.67408 -22.69839 -20.23210 -19.83944 -18.92315 -17.84145 -17.46728 -17.27139 -17.02272 -16.74568 -16.01270 -15.76809 -15.05767 -14.90139 -14.80110 -14.58076 -14.44490 -14.06590 -13.74242 -13.34634 -13.21322 -12.93312 -12.72148 -12.56340 -12.32151 -12.17868 -11.63888 -11.45052 -11.16924 -10.34223 -10.13217 -9.48893 -9.39946 -8.97466 -8.07225 -6.70055 -0.25489 0.68320 0.77773 0.94981 1.29902 1.37725 1.46079 1.53176 2.12882 2.19037 2.63205 2.78783 3.11337 3.61752 3.63798 3.89377 4.06272 4.21125 4.50813 4.67112 4.67805 4.79028 4.82396 4.85967 5.06505 5.17946 5.22430 5.38258 5.53340 5.58537 5.65294 5.81119 6.12857 6.19146 6.43530 6.60575 6.69119 6.72458 7.22301 7.74109 8.09357 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036859 B = 0.004434 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.464067 B = 6313.582016 C = 6920.188404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.074 3.926 3 C -0.022 4.022 4 N -0.427 5.427 5 C 0.272 3.728 6 N -0.622 5.622 7 C 0.380 3.620 8 C -0.320 4.320 9 C 0.119 3.881 10 C -0.471 4.471 11 H 0.061 0.939 12 C 0.052 3.948 13 N -0.833 5.833 14 Si 0.976 3.024 15 H -0.249 1.249 16 H -0.278 1.278 17 H -0.257 1.257 18 C -0.322 4.322 19 C 0.144 3.856 20 N -0.550 5.550 21 C 0.486 3.514 22 O -0.573 6.573 23 N -0.568 5.568 24 H 0.434 0.566 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.191 0.809 29 H 0.429 0.571 30 H 0.110 0.890 31 H 0.299 0.701 32 H 0.111 0.889 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.449 -4.082 -1.128 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.037 4.037 3 C -0.163 4.163 4 N -0.149 5.149 5 C 0.011 3.989 6 N -0.252 5.252 7 C 0.151 3.849 8 C -0.347 4.347 9 C 0.110 3.890 10 C -0.502 4.502 11 H 0.079 0.921 12 C -0.165 4.165 13 N -0.458 5.458 14 Si 0.800 3.200 15 H -0.174 1.174 16 H -0.205 1.205 17 H -0.182 1.182 18 C -0.346 4.346 19 C -0.010 4.010 20 N -0.270 5.270 21 C 0.276 3.724 22 O -0.454 6.454 23 N -0.206 5.206 24 H 0.276 0.724 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.110 0.890 28 H 0.208 0.792 29 H 0.268 0.732 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.478 -3.668 -1.051 22.800 hybrid contribution 1.274 -1.073 -0.237 1.683 sum -21.204 -4.741 -1.288 21.765 Atomic orbital electron populations 1.21045 0.83851 1.06213 1.05295 1.21869 0.97982 0.84551 0.99256 1.22158 0.88234 0.98278 1.07634 1.68009 1.07807 1.27846 1.11220 1.21121 0.86506 0.88408 1.02844 1.41531 1.02070 1.06964 1.74669 1.18124 0.87648 0.85903 0.93222 1.21218 0.92325 0.98617 1.22508 1.17782 0.93071 0.91610 0.86508 1.19504 0.90882 0.99221 1.40562 0.92107 1.26911 0.96201 0.99657 0.93764 1.69653 1.14608 1.26251 1.35301 0.85369 0.78383 0.77686 0.78611 1.17433 1.20506 1.18154 1.21710 0.95931 0.98445 1.18518 1.22069 0.91879 0.94514 0.92518 1.67468 1.38025 0.97024 1.24447 1.18875 0.83206 0.89456 0.80816 1.90944 1.65665 1.34406 1.54362 1.43243 1.05999 1.10984 1.60406 0.72380 0.88131 0.87336 0.88994 0.79175 0.73211 0.87157 0.89012 0.87133 0.81902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.09 71.24 0.72 0.22 16 2 C 0.07 1.17 6.79 41.12 0.28 1.45 16 3 C -0.02 -0.51 10.63 83.74 0.89 0.38 16 4 N -0.43 -14.65 7.87 -188.76 -1.49 -16.13 16 5 C 0.27 9.75 7.69 135.31 1.04 10.79 16 6 N -0.62 -24.77 5.53 -184.92 -1.02 -25.79 16 7 C 0.38 17.42 7.43 132.86 0.99 18.41 16 8 C -0.32 -15.76 9.74 23.01 0.22 -15.53 16 9 C 0.12 6.22 5.26 -21.12 -0.11 6.11 16 10 C -0.47 -26.53 9.66 23.52 0.23 -26.30 16 11 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 12 C 0.05 2.76 5.45 85.29 0.46 3.23 16 13 N -0.83 -44.64 13.92 21.84 0.30 -44.34 16 14 Si 0.98 42.26 24.40 68.60 1.67 43.94 16 15 H -0.25 -9.95 6.66 99.48 0.66 -9.29 16 16 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.26 -11.67 6.67 99.48 0.66 -11.00 16 18 C -0.32 -15.42 7.16 22.60 0.16 -15.26 16 19 C 0.14 6.27 11.10 84.27 0.94 7.20 16 20 N -0.55 -24.91 7.74 -194.38 -1.50 -26.41 16 21 C 0.49 14.76 7.96 86.39 0.69 15.44 16 22 O -0.57 -20.34 17.47 -5.12 -0.09 -20.42 16 23 N -0.57 -10.95 5.35 -301.48 -1.61 -12.56 16 24 H 0.43 5.39 8.84 -92.71 -0.82 4.57 16 25 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.11 0.24 8.06 -2.39 -0.02 0.22 16 27 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.19 3.19 8.04 -2.91 -0.02 3.17 16 29 H 0.43 15.77 8.29 -92.72 -0.77 15.00 16 30 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 31 H 0.30 14.23 8.29 -92.71 -0.77 13.46 16 32 H 0.11 5.08 4.08 -2.91 -0.01 5.07 16 33 H 0.16 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -72.28 287.74 2.28 -69.99 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.49 Total: 25.59 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 6.51 Total: 6.14 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.32 Total: -125.23 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.09 Total: -20.42 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.67 Total: 43.94 kcal Total: -72.28 2.28 -69.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162714942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.625 kcal (2) G-P(sol) polarization free energy of solvation -72.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds