Wall clock time and date at job start Mon Mar 30 2020 00:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86791 * 120.00109 * 2 1 4 4 H 1.48506 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47292 * 299.99793 * 3 2 1 6 6 H 1.48495 * 109.47449 * 60.00076 * 3 2 1 7 7 C 1.38782 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.36871 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.39070 * 120.00358 * 180.02562 * 9 7 2 11 11 C 1.40971 * 119.78334 * 180.02562 * 10 9 7 12 12 C 1.35903 * 119.72594 * 179.97438 * 11 10 9 13 13 C 1.41038 * 119.32595 * 0.02562 * 12 11 10 14 14 O 1.22073 * 120.21418 * 179.97438 * 13 12 11 15 15 N 1.34802 * 119.57373 * 359.97438 * 13 12 11 16 16 C 1.46500 * 119.88494 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47349 * 90.00322 * 16 15 13 18 18 C 1.38658 * 120.78488 * 270.29818 * 17 16 15 19 19 C 1.38203 * 119.15897 * 180.21971 * 18 17 16 20 20 N 1.31872 * 120.76276 * 359.47460 * 19 18 17 21 21 C 1.31868 * 121.73078 * 0.27879 * 20 19 18 22 22 C 1.38209 * 120.76227 * 359.97289 * 21 20 19 23 23 N 1.31249 * 119.77894 * 0.29007 * 10 9 7 24 24 H 0.97001 * 120.00123 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 26 26 H 1.08001 * 120.13541 * 0.02562 * 11 10 9 27 27 H 1.08007 * 120.33538 * 179.97438 * 12 11 10 28 28 H 1.08995 * 109.47348 * 330.00122 * 16 15 13 29 29 H 1.09001 * 109.47128 * 209.99598 * 16 15 13 30 30 H 1.07994 * 120.41972 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.61988 * 179.75634 * 19 18 17 32 32 H 1.07999 * 119.61884 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.41921 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7100 1.3463 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3964 1.2124 7 6 2.0098 -1.2019 0.0005 8 1 3.0899 -1.2019 0.0010 9 7 1.3255 -2.3873 0.0016 10 6 2.0208 -3.5917 0.0027 11 6 1.3113 -4.8098 0.0032 12 6 1.9919 -5.9861 0.0037 13 6 3.4022 -5.9682 0.0043 14 8 4.0299 -7.0152 0.0052 15 7 4.0525 -4.7874 0.0038 16 6 5.5173 -4.7608 0.0037 17 6 6.0196 -4.7522 -1.4171 18 6 6.2719 -5.9393 -2.0877 19 6 6.7362 -5.8922 -3.3886 20 7 6.9293 -4.7369 -3.9944 21 6 6.6953 -3.5889 -3.3894 22 6 6.2345 -3.5574 -2.0867 23 7 3.3333 -3.5867 0.0084 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3873 0.0016 26 1 0.2313 -4.8082 0.0024 27 1 1.4583 -6.9251 0.0046 28 1 5.8967 -5.6438 0.5179 29 1 5.8644 -3.8641 0.5171 30 1 6.1115 -6.8886 -1.5984 31 1 6.9390 -6.8122 -3.9166 32 1 6.8648 -2.6625 -3.9181 33 1 6.0442 -2.6140 -1.5967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:07 Heat of formation + Delta-G solvation = 74.653996 kcal Electronic energy + Delta-G solvation = -19986.311853 eV Core-core repulsion = 16820.732027 eV Total energy + Delta-G solvation = -3165.579826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30513 -39.56246 -37.11282 -35.12206 -34.22318 -32.12565 -31.59207 -30.99655 -29.14988 -26.96068 -25.14081 -23.38141 -23.25869 -22.00244 -21.29431 -18.41834 -17.45835 -16.60079 -16.50863 -15.91939 -15.89775 -15.40348 -15.18371 -14.68423 -14.31736 -13.88440 -13.53764 -13.48785 -13.00163 -12.72012 -12.59907 -12.55026 -12.09282 -11.71077 -11.26205 -11.19828 -10.64677 -10.42981 -10.19363 -10.05160 -9.63442 -9.47585 -9.26714 -8.94415 -8.66445 -8.63550 -7.14506 -6.70432 -3.90454 1.13786 1.34572 1.36791 2.81244 3.10935 3.14759 3.15594 3.20286 3.95199 4.05206 4.14725 4.62351 4.63400 4.87736 4.90683 5.04160 5.14807 5.27497 5.35643 5.37335 5.56619 5.74577 5.79347 5.89165 6.02056 6.16816 6.24477 6.29089 6.57042 6.84711 6.89815 6.91331 7.31676 7.60837 8.11946 8.47413 8.62096 8.90952 9.11397 9.55869 10.45646 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.006077 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.143002 B = 4606.492793 C = 5885.517839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.019 3.981 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.271 4.271 8 H 0.113 0.887 9 N -0.524 5.524 10 C 0.297 3.703 11 C -0.069 4.069 12 C -0.190 4.190 13 C 0.490 3.510 14 O -0.585 6.585 15 N -0.395 5.395 16 C 0.179 3.821 17 C -0.058 4.058 18 C -0.149 4.149 19 C 0.085 3.915 20 N -0.488 5.488 21 C 0.088 3.912 22 C -0.141 4.141 23 N -0.367 5.367 24 H 0.276 0.724 25 H 0.408 0.592 26 H 0.133 0.867 27 H 0.147 0.853 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -5.467 -1.345 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.186 4.186 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.404 4.404 8 H 0.131 0.869 9 N -0.146 5.146 10 C 0.035 3.965 11 C -0.095 4.095 12 C -0.218 4.218 13 C 0.284 3.716 14 O -0.468 6.468 15 N -0.210 5.210 16 C 0.057 3.943 17 C -0.067 4.067 18 C -0.169 4.169 19 C -0.072 4.072 20 N -0.198 5.198 21 C -0.069 4.069 22 C -0.161 4.161 23 N -0.212 5.212 24 H 0.086 0.914 25 H 0.245 0.755 26 H 0.150 0.850 27 H 0.165 0.835 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.414 -5.210 -2.177 9.320 hybrid contribution -1.369 0.292 0.825 1.625 sum 6.046 -4.918 -1.352 7.910 Atomic orbital electron populations 1.69667 1.06057 1.28785 1.48248 1.25376 0.95778 1.00134 0.97308 0.85703 0.79680 0.80546 0.77956 1.18911 1.20564 1.20575 1.19931 0.93653 0.81773 1.45046 0.86915 1.40576 1.07468 1.00836 1.65678 1.18970 0.89958 0.86699 1.00849 1.21923 1.01206 0.92297 0.94067 1.22223 0.93908 0.99072 1.06569 1.17508 0.89480 0.84159 0.80439 1.90832 1.69412 1.31001 1.55580 1.48777 1.05625 1.03076 1.63478 1.20153 0.77616 1.04401 0.92162 1.20650 0.95598 0.93243 0.97205 1.22230 0.99222 0.99367 0.96126 1.22681 0.96184 0.96015 0.92272 1.67614 1.15481 0.98657 1.38021 1.22717 0.95762 0.96151 0.92270 1.22173 0.98698 0.99210 0.96044 1.75681 1.04961 1.01337 1.39218 0.91392 0.75481 0.84955 0.83549 0.88370 0.88354 0.84274 0.83100 0.82905 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.92 13.05 55.49 0.72 -21.19 16 2 C 0.02 0.44 5.50 -17.45 -0.10 0.35 16 3 Si 0.93 18.91 29.55 -169.99 -5.02 13.89 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.27 -6.52 9.70 -15.10 -0.15 -6.67 16 8 H 0.11 2.75 7.09 -52.48 -0.37 2.38 16 9 N -0.52 -11.61 5.43 -10.94 -0.06 -11.67 16 10 C 0.30 6.14 7.55 -155.22 -1.17 4.97 16 11 C -0.07 -1.19 9.90 -39.38 -0.39 -1.58 16 12 C -0.19 -3.28 10.00 -39.36 -0.39 -3.67 16 13 C 0.49 9.65 7.50 -15.19 -0.11 9.54 16 14 O -0.59 -12.24 16.33 4.85 0.08 -12.16 16 15 N -0.40 -7.64 3.49 -64.52 -0.23 -7.87 16 16 C 0.18 2.91 5.88 -5.19 -0.03 2.88 16 17 C -0.06 -0.91 5.50 -104.31 -0.57 -1.48 16 18 C -0.15 -2.25 9.82 -39.44 -0.39 -2.64 16 19 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 20 N -0.49 -7.58 10.36 -13.25 -0.14 -7.72 16 21 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 22 C -0.14 -2.14 9.82 -39.44 -0.39 -2.53 16 23 N -0.37 -7.78 10.31 31.34 0.32 -7.45 16 24 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 25 H 0.41 8.80 7.89 -40.82 -0.32 8.48 16 26 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.15 2.11 8.06 -52.48 -0.42 1.69 16 28 H 0.10 1.51 7.38 -51.93 -0.38 1.12 16 29 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 30 H 0.14 2.07 7.68 -52.49 -0.40 1.67 16 31 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -28.54 300.12 -7.03 -35.57 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -3.15 Total: 12.81 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -4.08 Total: 1.28 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.63 Total: -55.90 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.54 -7.03 -35.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.221 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds