Wall clock time and date at job start Mon Mar 30 2020 00:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86791 * 120.00109 * 2 1 4 4 H 1.48506 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47292 * 299.99793 * 3 2 1 6 6 H 1.48495 * 109.47449 * 60.00076 * 3 2 1 7 7 C 1.38782 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.36871 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.39070 * 120.00358 * 180.02562 * 9 7 2 11 11 C 1.40971 * 119.78334 * 180.02562 * 10 9 7 12 12 C 1.35903 * 119.72594 * 179.97438 * 11 10 9 13 13 C 1.41038 * 119.32595 * 0.02562 * 12 11 10 14 14 O 1.22073 * 120.21418 * 179.97438 * 13 12 11 15 15 N 1.34802 * 119.57373 * 359.97438 * 13 12 11 16 16 C 1.46500 * 119.88494 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47349 * 90.00322 * 16 15 13 18 18 C 1.38658 * 120.78488 * 270.29818 * 17 16 15 19 19 C 1.38203 * 119.15897 * 180.21971 * 18 17 16 20 20 N 1.31872 * 120.76276 * 359.47460 * 19 18 17 21 21 C 1.31868 * 121.73078 * 0.27879 * 20 19 18 22 22 C 1.38209 * 120.76227 * 359.97289 * 21 20 19 23 23 N 1.31249 * 119.77894 * 0.29007 * 10 9 7 24 24 H 0.97001 * 120.00123 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99803 * 0.02562 * 9 7 2 26 26 H 1.08001 * 120.13541 * 0.02562 * 11 10 9 27 27 H 1.08007 * 120.33538 * 179.97438 * 12 11 10 28 28 H 1.08995 * 109.47348 * 330.00122 * 16 15 13 29 29 H 1.09001 * 109.47128 * 209.99598 * 16 15 13 30 30 H 1.07994 * 120.41972 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.61988 * 179.75634 * 19 18 17 32 32 H 1.07999 * 119.61884 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.41921 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7100 1.3463 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3964 1.2124 7 6 2.0098 -1.2019 0.0005 8 1 3.0899 -1.2019 0.0010 9 7 1.3255 -2.3873 0.0016 10 6 2.0208 -3.5917 0.0027 11 6 1.3113 -4.8098 0.0032 12 6 1.9919 -5.9861 0.0037 13 6 3.4022 -5.9682 0.0043 14 8 4.0299 -7.0152 0.0052 15 7 4.0525 -4.7874 0.0038 16 6 5.5173 -4.7608 0.0037 17 6 6.0196 -4.7522 -1.4171 18 6 6.2719 -5.9393 -2.0877 19 6 6.7362 -5.8922 -3.3886 20 7 6.9293 -4.7369 -3.9944 21 6 6.6953 -3.5889 -3.3894 22 6 6.2345 -3.5574 -2.0867 23 7 3.3333 -3.5867 0.0084 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3873 0.0016 26 1 0.2313 -4.8082 0.0024 27 1 1.4583 -6.9251 0.0046 28 1 5.8967 -5.6438 0.5179 29 1 5.8644 -3.8641 0.5171 30 1 6.1115 -6.8886 -1.5984 31 1 6.9390 -6.8122 -3.9166 32 1 6.8648 -2.6625 -3.9181 33 1 6.0442 -2.6140 -1.5967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:07 Heat of formation + Delta-G solvation = 57.773148 kcal Electronic energy + Delta-G solvation = -19987.043861 eV Core-core repulsion = 16820.732027 eV Total energy + Delta-G solvation = -3166.311834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72865 -40.85756 -38.72566 -36.67112 -35.68427 -33.62578 -33.11690 -32.14907 -30.72966 -28.40272 -26.76834 -24.84943 -24.43642 -23.44436 -22.68161 -20.08108 -18.95216 -18.15878 -17.79029 -17.42037 -17.14485 -16.79297 -16.51630 -16.19478 -15.86450 -15.49263 -14.75718 -14.61600 -14.42592 -14.20860 -14.09106 -13.95811 -13.40318 -13.36126 -12.88180 -12.42770 -12.34145 -12.05533 -11.76602 -11.66482 -11.07667 -10.75631 -10.49486 -10.27893 -10.22988 -10.09721 -8.79133 -8.44680 -5.72197 -0.27581 0.13001 0.19061 1.21713 1.48720 1.56395 1.59263 1.67608 2.32368 2.59532 2.86987 3.09275 3.25800 3.54438 3.60725 3.66368 3.86636 3.95342 4.15007 4.18575 4.22779 4.45573 4.54688 4.70003 4.79022 4.88886 4.95124 4.98835 5.27867 5.31778 5.44480 5.54868 5.74498 5.89308 6.80729 6.96385 6.99128 7.23518 7.41496 7.89169 8.72501 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.006077 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.143002 B = 4606.492793 C = 5885.517839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.021 4.021 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.291 4.291 8 H 0.101 0.899 9 N -0.541 5.541 10 C 0.300 3.700 11 C -0.072 4.072 12 C -0.178 4.178 13 C 0.475 3.525 14 O -0.600 6.600 15 N -0.396 5.396 16 C 0.174 3.826 17 C -0.069 4.069 18 C -0.155 4.155 19 C 0.086 3.914 20 N -0.503 5.503 21 C 0.086 3.914 22 C -0.150 4.150 23 N -0.379 5.379 24 H 0.275 0.725 25 H 0.409 0.591 26 H 0.171 0.829 27 H 0.180 0.820 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -6.405 -1.763 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.221 4.221 3 Si 0.814 3.186 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.423 4.423 8 H 0.119 0.881 9 N -0.164 5.164 10 C 0.036 3.964 11 C -0.097 4.097 12 C -0.206 4.206 13 C 0.270 3.730 14 O -0.485 6.485 15 N -0.211 5.211 16 C 0.052 3.948 17 C -0.078 4.078 18 C -0.175 4.175 19 C -0.070 4.070 20 N -0.213 5.213 21 C -0.070 4.070 22 C -0.171 4.171 23 N -0.222 5.222 24 H 0.085 0.915 25 H 0.246 0.754 26 H 0.188 0.812 27 H 0.198 0.802 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.158 0.842 31 H 0.197 0.803 32 H 0.195 0.805 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.814 -6.150 -2.593 10.276 hybrid contribution -1.323 0.332 0.947 1.660 sum 6.491 -5.818 -1.646 8.871 Atomic orbital electron populations 1.69734 1.06918 1.29133 1.50452 1.25995 0.96434 1.02375 0.97321 0.84885 0.78663 0.77403 0.77647 1.18663 1.20583 1.20549 1.19905 0.93283 0.82876 1.46210 0.88087 1.40508 1.07412 1.00799 1.67701 1.19370 0.90157 0.87663 0.99201 1.22109 1.03078 0.90528 0.93954 1.22563 0.92787 1.00534 1.04669 1.17981 0.90651 0.83942 0.80454 1.90827 1.69975 1.31257 1.56396 1.48984 1.06638 1.02546 1.62910 1.20359 0.76173 1.05215 0.93012 1.20669 0.96257 0.93908 0.96959 1.22292 0.99581 0.99087 0.96572 1.23136 0.95023 0.96822 0.92056 1.67701 1.16012 0.99180 1.38408 1.23120 0.94849 0.96970 0.92110 1.22267 0.99166 0.99114 0.96512 1.75590 1.05975 1.02994 1.37608 0.91523 0.75385 0.81194 0.80225 0.87611 0.87492 0.84232 0.80301 0.80543 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.03 13.05 21.64 0.28 -45.74 16 2 C -0.02 -0.99 5.50 84.86 0.47 -0.52 16 3 Si 0.99 39.05 29.55 68.60 2.03 41.08 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.29 -14.10 9.70 84.04 0.82 -13.29 16 8 H 0.10 5.01 7.09 -2.91 -0.02 4.99 16 9 N -0.54 -23.90 5.43 -188.51 -1.02 -24.92 16 10 C 0.30 12.06 7.55 133.83 1.01 13.07 16 11 C -0.07 -2.27 9.90 22.40 0.22 -2.05 16 12 C -0.18 -5.61 10.00 22.41 0.22 -5.39 16 13 C 0.48 17.79 7.50 84.92 0.64 18.43 16 14 O -0.60 -24.01 16.33 -5.55 -0.09 -24.10 16 15 N -0.40 -14.85 3.49 -476.07 -1.66 -16.51 16 16 C 0.17 5.51 5.88 85.63 0.50 6.01 16 17 C -0.07 -2.11 5.50 -19.67 -0.11 -2.21 16 18 C -0.15 -4.48 9.82 22.36 0.22 -4.26 16 19 C 0.09 2.31 11.18 84.68 0.95 3.25 16 20 N -0.50 -14.73 10.36 -195.84 -2.03 -16.76 16 21 C 0.09 2.37 11.18 84.68 0.95 3.32 16 22 C -0.15 -4.42 9.82 22.36 0.22 -4.20 16 23 N -0.38 -15.78 10.31 -54.77 -0.56 -16.34 16 24 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 25 H 0.41 17.64 7.89 -92.71 -0.73 16.91 16 26 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 27 H 0.18 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.11 3.16 7.38 -2.39 -0.02 3.14 16 29 H 0.11 3.13 8.10 -2.39 -0.02 3.11 16 30 H 0.14 3.99 7.68 -2.91 -0.02 3.97 16 31 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.18 3.87 8.06 -2.91 -0.02 3.84 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -60.06 300.12 3.46 -56.60 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.42 Total: 34.55 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.10 Total: 12.16 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.00 Total: -120.28 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.09 Total: -24.10 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -60.06 3.46 -56.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.370 kcal (2) G-P(sol) polarization free energy of solvation -60.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds