Wall clock time and date at job start Mon Mar 30 2020 00:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48499 * 109.47105 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47047 * 299.99721 * 3 2 1 6 6 H 1.48505 * 109.47268 * 59.99366 * 3 2 1 7 7 C 1.38792 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99546 * 180.02562 * 7 2 1 9 9 N 1.36871 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.38973 * 119.99867 * 179.97438 * 9 7 2 11 11 C 1.39235 * 120.02909 * 0.02562 * 10 9 7 12 12 N 1.32033 * 119.96837 * 179.97438 * 11 10 9 13 13 C 1.32618 * 120.02627 * 359.97438 * 12 11 10 14 14 O 1.35743 * 119.97295 * 179.97438 * 13 12 11 15 15 C 1.42899 * 117.00067 * 0.02562 * 14 13 12 16 16 C 1.50702 * 109.47026 * 179.97438 * 15 14 13 17 17 C 1.38225 * 119.61833 * 359.97438 * 16 15 14 18 18 C 1.38635 * 119.15939 * 180.02562 * 17 16 15 19 19 C 1.38675 * 118.41956 * 0.02562 * 18 17 16 20 20 C 1.38186 * 119.16332 * 0.27967 * 19 18 17 21 21 N 1.31860 * 119.61626 * 180.02562 * 16 15 14 22 22 C 1.38962 * 120.05453 * 0.26162 * 13 12 11 23 23 N 1.32062 * 120.03183 * 359.47370 * 22 13 12 24 24 H 0.97005 * 119.99972 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00136 * 0.02562 * 9 7 2 26 26 H 1.07993 * 120.01467 * 359.95196 * 11 10 9 27 27 H 1.08993 * 109.47317 * 59.99787 * 15 14 13 28 28 H 1.08997 * 109.47069 * 299.99396 * 15 14 13 29 29 H 1.07997 * 120.42054 * 0.04702 * 17 16 15 30 30 H 1.07999 * 120.78848 * 179.97438 * 18 17 16 31 31 H 1.08002 * 120.41399 * 179.97438 * 19 18 17 32 32 H 1.07999 * 119.61418 * 179.70216 * 20 19 18 33 33 H 1.07996 * 119.98347 * 179.74196 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3464 0.0006 5 1 1.8912 2.3964 -1.2126 6 1 1.8910 2.3966 1.2125 7 6 2.0098 -1.2020 0.0005 8 1 3.0898 -1.2020 0.0010 9 7 1.3254 -2.3873 0.0005 10 6 2.0203 -3.5909 0.0005 11 6 3.4126 -3.5916 0.0011 12 7 4.0716 -4.7357 0.0016 13 6 3.4078 -5.8838 0.0021 14 8 4.0863 -7.0595 0.0021 15 6 5.5134 -6.9849 0.0021 16 6 6.0892 -8.3776 0.0027 17 6 5.2397 -9.4680 0.0037 18 6 5.7796 -10.7449 0.0049 19 6 7.1600 -10.8778 0.0055 20 6 7.9459 -9.7412 0.0108 21 7 7.3975 -8.5418 0.0034 22 6 2.0182 -5.8843 -0.0034 23 7 1.3568 -4.7413 0.0014 24 1 -0.4850 0.8401 -0.0004 25 1 0.3554 -2.3873 -0.0002 26 1 3.9533 -2.6568 0.0007 27 1 5.8494 -6.4528 0.8920 28 1 5.8494 -6.4529 -0.8879 29 1 4.1690 -9.3271 0.0033 30 1 5.1404 -11.6154 0.0061 31 1 7.6150 -11.8573 0.0068 32 1 9.0217 -9.8362 0.0162 33 1 1.4788 -6.8199 -0.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:00 Heat of formation + Delta-G solvation = 36.902660 kcal Electronic energy + Delta-G solvation = -18996.390067 eV Core-core repulsion = 15829.173220 eV Total energy + Delta-G solvation = -3167.216847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82934 -41.11033 -39.23515 -37.14714 -34.71357 -33.84329 -33.54615 -32.89155 -29.99557 -27.97148 -26.89907 -25.31878 -24.48031 -23.57053 -22.83190 -20.19290 -19.24417 -18.72548 -18.06620 -17.45776 -17.19824 -16.82879 -16.39589 -16.26223 -15.75500 -15.54527 -15.33513 -15.00370 -14.61259 -14.49664 -13.96946 -13.45592 -13.31842 -13.15801 -12.75019 -12.56729 -12.43700 -12.21286 -12.04660 -11.84552 -11.73576 -10.81247 -10.59521 -10.41591 -9.95173 -9.89596 -8.66153 -8.57979 -5.83726 0.13806 0.27670 0.37012 0.57334 1.45319 1.49298 1.59316 1.94856 2.22019 2.80036 2.82810 2.95257 3.29271 3.38089 3.60504 3.84889 3.86921 4.03941 4.07296 4.21151 4.32760 4.36339 4.47539 4.62918 4.70208 4.84210 4.91277 5.13878 5.24326 5.30515 5.32123 5.70668 5.79109 6.34549 6.47176 6.72375 6.98737 7.03639 7.28095 7.60468 8.59728 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044696 B = 0.003144 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.309367 B = 8903.433309 C = 9514.596292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.005 2.995 4 H -0.253 1.253 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.322 4.322 8 H 0.116 0.884 9 N -0.537 5.537 10 C 0.282 3.718 11 C -0.017 4.017 12 N -0.456 5.456 13 C 0.124 3.876 14 O -0.303 6.303 15 C 0.134 3.866 16 C 0.103 3.897 17 C -0.162 4.162 18 C -0.074 4.074 19 C -0.167 4.167 20 C 0.089 3.911 21 N -0.513 5.513 22 C 0.123 3.877 23 N -0.525 5.525 24 H 0.280 0.720 25 H 0.396 0.604 26 H 0.164 0.836 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -17.667 0.008 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.221 4.221 3 Si 0.827 3.173 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.451 4.451 8 H 0.134 0.866 9 N -0.146 5.146 10 C 0.038 3.962 11 C -0.189 4.189 12 N -0.182 5.182 13 C -0.060 4.060 14 O -0.211 6.211 15 C 0.057 3.943 16 C -0.033 4.033 17 C -0.182 4.182 18 C -0.100 4.100 19 C -0.187 4.187 20 C -0.068 4.068 21 N -0.224 5.224 22 C -0.044 4.044 23 N -0.251 5.251 24 H 0.090 0.910 25 H 0.231 0.769 26 H 0.181 0.819 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.163 0.837 30 H 0.185 0.815 31 H 0.190 0.810 32 H 0.201 0.799 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 11.408 -16.728 0.009 20.247 hybrid contribution -0.765 0.543 -0.002 0.938 sum 10.642 -16.185 0.007 19.370 Atomic orbital electron populations 1.69812 1.07617 1.29822 1.48209 1.26302 0.96529 1.03212 0.96024 0.84674 0.78758 0.75956 0.77898 1.17623 1.20218 1.20230 1.20156 0.93706 0.82419 1.48843 0.86607 1.40749 1.08260 1.01213 1.64368 1.19341 0.90741 0.86962 0.99131 1.22413 0.90384 0.95688 1.10380 1.67620 1.40394 0.98389 1.11777 1.20184 0.90693 0.84949 1.10142 1.85968 1.19348 1.25005 1.90738 1.20648 0.78428 0.92811 1.02398 1.20738 0.89955 0.94743 0.97876 1.22109 1.02252 0.93162 1.00686 1.22055 0.96211 0.97544 0.94209 1.22579 0.94374 1.01500 1.00206 1.23272 1.02023 0.86721 0.94780 1.67155 1.12487 1.29036 1.13729 1.22729 0.88683 0.96884 0.96112 1.67987 1.38576 0.97344 1.21189 0.91015 0.76943 0.81912 0.91281 0.91288 0.83690 0.81524 0.81006 0.79906 0.78794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.28 13.05 21.65 0.28 -48.00 16 2 C -0.02 -0.95 5.50 84.86 0.47 -0.48 16 3 Si 1.00 38.74 29.55 68.60 2.03 40.77 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.32 -16.02 9.55 84.04 0.80 -15.22 16 8 H 0.12 5.38 5.67 -2.91 -0.02 5.37 16 9 N -0.54 -26.95 5.44 -188.92 -1.03 -27.97 16 10 C 0.28 13.14 7.63 132.98 1.01 14.16 16 11 C -0.02 -0.74 10.48 84.90 0.89 0.15 16 12 N -0.46 -18.88 9.38 -307.40 -2.88 -21.76 16 13 C 0.12 4.71 7.49 84.75 0.63 5.34 16 14 O -0.30 -9.97 8.58 -90.67 -0.78 -10.75 16 15 C 0.13 4.20 5.86 71.24 0.42 4.62 16 16 C 0.10 2.83 6.78 42.55 0.29 3.12 16 17 C -0.16 -3.64 9.41 22.36 0.21 -3.43 16 18 C -0.07 -1.16 10.18 22.47 0.23 -0.93 16 19 C -0.17 -2.26 10.11 22.36 0.23 -2.04 16 20 C 0.09 1.62 11.18 84.67 0.95 2.56 16 21 N -0.51 -13.52 10.27 -183.88 -1.89 -15.41 16 22 C 0.12 4.52 11.17 84.83 0.95 5.47 16 23 N -0.52 -22.85 10.52 -192.14 -2.02 -24.87 16 24 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 25 H 0.40 20.84 8.01 -92.71 -0.74 20.10 16 26 H 0.16 6.88 5.94 -2.91 -0.02 6.87 16 27 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 28 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 29 H 0.15 3.16 7.00 -2.91 -0.02 3.14 16 30 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.20 5.45 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -61.10 296.87 1.20 -59.90 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.42 Total: 34.77 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 7.07 Total: 13.34 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -7.54 Total: -138.02 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.78 Total: -10.75 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -61.10 1.20 -59.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.803 kcal (2) G-P(sol) polarization free energy of solvation -61.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds