Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36934 * 120.00622 * 2 1 4 4 H 1.08000 * 120.00425 * 203.96806 * 3 2 1 5 5 C 1.38858 * 119.99765 * 23.97090 * 3 2 1 6 6 N 1.31536 * 119.99729 * 10.47616 * 5 3 2 7 7 Si 1.86794 * 120.00192 * 190.48365 * 5 3 2 8 8 H 1.48501 * 109.47069 * 89.99406 * 7 5 3 9 9 H 1.48499 * 109.47282 * 209.99449 * 7 5 3 10 10 H 1.48497 * 109.46905 * 329.99829 * 7 5 3 11 11 C 1.38522 * 119.99829 * 179.97438 * 2 1 3 12 12 C 1.39733 * 120.50590 * 184.97624 * 11 2 1 13 13 C 1.38163 * 118.44133 * 180.02562 * 12 11 2 14 14 N 1.32491 * 119.26889 * 359.73864 * 13 12 11 15 15 C 1.32344 * 120.96049 * 0.54316 * 14 13 12 16 16 N 1.39334 * 119.14519 * 179.71720 * 15 14 13 17 17 C 1.36128 * 119.64275 * 179.75334 * 16 15 14 18 18 C 1.35266 * 120.66296 * 179.97438 * 17 16 15 19 19 C 1.40278 * 119.95028 * 359.97438 * 18 17 16 20 20 C 1.36387 * 119.29809 * 0.02562 * 19 18 17 21 21 C 1.34661 * 119.64259 * 359.73158 * 16 15 14 22 22 O 1.22033 * 119.98375 * 359.97438 * 21 16 15 23 23 N 1.32276 * 121.70818 * 359.43880 * 15 14 13 24 24 H 1.09002 * 109.47479 * 273.76264 * 1 2 3 25 25 H 1.09007 * 109.46635 * 33.76227 * 1 2 3 26 26 H 1.08999 * 109.47531 * 153.75811 * 1 2 3 27 27 H 0.97005 * 119.99819 * 180.02562 * 6 5 3 28 28 H 1.08006 * 120.77690 * 0.05029 * 12 11 2 29 29 H 1.08004 * 120.36505 * 180.02562 * 13 12 11 30 30 H 1.08000 * 119.66656 * 359.97438 * 17 16 15 31 31 H 1.08006 * 120.02610 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.34533 * 180.27496 * 19 18 17 33 33 H 1.08002 * 120.32773 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1599 1.2261 -0.3799 5 6 1.5453 2.3365 0.4886 6 7 0.4037 2.2552 1.1368 7 14 2.3534 3.9999 0.2252 8 1 1.8722 4.5875 -1.0509 9 1 2.0030 4.9042 1.3497 10 1 3.8276 3.8304 0.1672 11 6 2.1575 -1.1997 0.0005 12 6 3.5509 -1.2143 0.1050 13 6 4.1983 -2.4348 0.1007 14 7 3.4841 -3.5465 0.0037 15 6 2.1654 -3.5018 -0.0993 16 7 1.4523 -4.6941 -0.2052 17 6 0.0952 -4.6602 -0.3066 18 6 -0.6176 -5.8050 -0.4109 19 6 0.0422 -7.0429 -0.4157 20 6 1.4019 -7.0748 -0.3139 21 6 2.1129 -5.8675 -0.2065 22 8 3.3298 -5.8824 -0.1157 23 7 1.5065 -2.3549 -0.0990 24 1 -0.3634 0.0674 1.0254 25 1 -0.3633 0.8544 -0.5712 26 1 -0.3634 -0.9217 -0.4544 27 1 -0.0187 3.0592 1.4777 28 1 4.1086 -0.2930 0.1875 29 1 5.2743 -2.4823 0.1802 30 1 -0.4175 -3.7096 -0.3038 31 1 -1.6940 -5.7661 -0.4912 32 1 -0.5202 -7.9607 -0.5031 33 1 1.9270 -8.0186 -0.3164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166801647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = 96.392042 kcal Electronic energy + Delta-G solvation = -20215.028221 eV Core-core repulsion = 17050.391028 eV Total energy + Delta-G solvation = -3164.637193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40444 -39.47043 -36.59298 -36.56782 -34.21565 -32.82577 -31.32349 -29.91443 -29.39585 -26.82009 -24.99319 -24.63473 -23.19147 -22.09129 -21.04982 -18.79322 -17.19208 -17.12282 -16.23436 -16.07498 -15.78015 -15.61256 -14.92209 -14.54270 -13.99553 -13.87428 -13.83669 -13.64819 -12.86993 -12.77284 -12.21126 -11.81167 -11.73249 -11.64376 -11.39675 -11.01428 -10.88957 -10.59978 -10.57076 -10.16777 -10.00613 -9.36791 -9.27622 -8.80436 -8.07287 -7.76191 -7.28745 -6.67397 -4.16848 0.82665 2.07244 2.16737 2.37158 2.65875 3.01808 3.03612 3.06733 3.77694 3.92305 4.42404 4.59463 4.79685 4.91430 5.00189 5.02512 5.25922 5.37385 5.45285 5.82657 5.95223 6.15337 6.23137 6.37296 6.41663 6.45905 6.58330 6.73788 6.81988 7.08128 7.10958 7.18641 7.38134 7.64527 7.90788 8.32541 8.47645 8.91122 9.01235 9.39761 10.30480 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034486 B = 0.004815 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.734167 B = 5813.778843 C = 6558.036550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.396 5.396 3 C -0.316 4.316 4 H 0.103 0.897 5 C 0.037 3.963 6 N -0.860 5.860 7 Si 0.936 3.064 8 H -0.273 1.273 9 H -0.279 1.279 10 H -0.265 1.265 11 C 0.396 3.604 12 C -0.300 4.300 13 C 0.169 3.831 14 N -0.567 5.567 15 C 0.533 3.467 16 N -0.425 5.425 17 C 0.160 3.840 18 C -0.246 4.246 19 C -0.018 4.018 20 C -0.247 4.247 21 C 0.510 3.490 22 O -0.487 6.487 23 N -0.618 5.618 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.275 0.725 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.173 0.827 31 H 0.146 0.854 32 H 0.132 0.868 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 -8.334 -2.457 9.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.084 5.084 3 C -0.445 4.445 4 H 0.121 0.879 5 C -0.170 4.170 6 N -0.494 5.494 7 Si 0.762 3.238 8 H -0.199 1.199 9 H -0.205 1.205 10 H -0.190 1.190 11 C 0.148 3.852 12 C -0.331 4.331 13 C 0.012 3.988 14 N -0.295 5.295 15 C 0.176 3.824 16 N -0.136 5.136 17 C 0.034 3.966 18 C -0.269 4.269 19 C -0.040 4.040 20 C -0.269 4.269 21 C 0.308 3.692 22 O -0.361 6.361 23 N -0.353 5.353 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.190 0.810 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.481 -8.688 -2.342 9.648 hybrid contribution 0.462 1.737 0.053 1.798 sum -3.019 -6.951 -2.289 7.917 Atomic orbital electron populations 1.21489 0.79357 0.99245 1.02103 1.42536 1.05447 1.00987 1.59432 1.19745 1.00997 0.83530 1.40275 0.87914 1.25506 0.96441 1.00629 0.94450 1.70071 1.16826 1.30413 1.32107 0.85761 0.79649 0.80167 0.78271 1.19897 1.20475 1.18971 1.18086 0.88525 0.84821 0.93745 1.21903 0.94559 1.00083 1.16579 1.22492 0.99204 0.86619 0.90477 1.68257 1.04387 1.31330 1.25534 1.18817 0.86203 0.83812 0.93586 1.42784 1.06657 1.06088 1.58029 1.22218 0.82021 1.01546 0.90831 1.20622 1.00777 0.90988 1.14489 1.21446 0.94267 0.98128 0.90118 1.22094 0.94907 0.97518 1.12377 1.17247 0.88767 0.82862 0.80287 1.91038 1.12287 1.85416 1.47397 1.66841 1.40739 0.96772 1.30995 0.92032 0.91852 0.93744 0.91455 0.84567 0.82968 0.80965 0.83664 0.85028 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.70 8.79 59.84 0.53 3.22 16 2 N -0.40 -9.50 3.11 -122.22 -0.38 -9.88 16 3 C -0.32 -7.64 8.95 -15.04 -0.13 -7.78 16 4 H 0.10 2.38 6.40 -52.49 -0.34 2.05 16 5 C 0.04 0.88 5.14 -17.45 -0.09 0.79 16 6 N -0.86 -21.02 10.64 55.49 0.59 -20.43 16 7 Si 0.94 18.29 29.57 -169.99 -5.03 13.27 16 8 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 9 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 10 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 11 C 0.40 9.25 7.36 -154.77 -1.14 8.12 16 12 C -0.30 -6.48 9.33 -39.05 -0.36 -6.84 16 13 C 0.17 3.48 11.29 -17.30 -0.20 3.28 16 14 N -0.57 -12.96 7.81 -13.84 -0.11 -13.07 16 15 C 0.53 11.77 8.08 -321.92 -2.60 9.17 16 16 N -0.42 -8.07 2.82 -67.04 -0.19 -8.26 16 17 C 0.16 2.39 10.10 -16.70 -0.17 2.22 16 18 C -0.25 -2.79 10.01 -39.87 -0.40 -3.19 16 19 C -0.02 -0.20 10.10 -39.48 -0.40 -0.60 16 20 C -0.25 -3.47 9.99 -39.39 -0.39 -3.86 16 21 C 0.51 9.69 7.37 -15.45 -0.11 9.57 16 22 O -0.49 -11.03 15.25 4.89 0.07 -10.96 16 23 N -0.62 -13.75 7.79 -12.97 -0.10 -13.85 16 24 H 0.06 1.44 7.41 -51.93 -0.38 1.06 16 25 H 0.06 1.43 7.25 -51.92 -0.38 1.06 16 26 H 0.04 0.90 7.22 -51.93 -0.37 0.52 16 27 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 28 H 0.14 2.79 6.41 -52.48 -0.34 2.45 16 29 H 0.15 2.57 8.06 -52.48 -0.42 2.15 16 30 H 0.17 2.50 7.22 -52.49 -0.38 2.12 16 31 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -30.10 287.22 -9.29 -39.39 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.01 Total: 5.36 kcal Atomic # 6 Polarization: 19.58 SS G_CDS: -5.47 Total: 14.11 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.19 Total: -65.49 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.10 -9.29 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.784 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds