Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36934 * 120.00622 * 2 1 4 4 H 1.08000 * 120.00425 * 203.96806 * 3 2 1 5 5 C 1.38858 * 119.99765 * 23.97090 * 3 2 1 6 6 N 1.31536 * 119.99729 * 10.47616 * 5 3 2 7 7 Si 1.86794 * 120.00192 * 190.48365 * 5 3 2 8 8 H 1.48501 * 109.47069 * 89.99406 * 7 5 3 9 9 H 1.48499 * 109.47282 * 209.99449 * 7 5 3 10 10 H 1.48497 * 109.46905 * 329.99829 * 7 5 3 11 11 C 1.38522 * 119.99829 * 179.97438 * 2 1 3 12 12 C 1.39733 * 120.50590 * 184.97624 * 11 2 1 13 13 C 1.38163 * 118.44133 * 180.02562 * 12 11 2 14 14 N 1.32491 * 119.26889 * 359.73864 * 13 12 11 15 15 C 1.32344 * 120.96049 * 0.54316 * 14 13 12 16 16 N 1.39334 * 119.14519 * 179.71720 * 15 14 13 17 17 C 1.36128 * 119.64275 * 179.75334 * 16 15 14 18 18 C 1.35266 * 120.66296 * 179.97438 * 17 16 15 19 19 C 1.40278 * 119.95028 * 359.97438 * 18 17 16 20 20 C 1.36387 * 119.29809 * 0.02562 * 19 18 17 21 21 C 1.34661 * 119.64259 * 359.73158 * 16 15 14 22 22 O 1.22033 * 119.98375 * 359.97438 * 21 16 15 23 23 N 1.32276 * 121.70818 * 359.43880 * 15 14 13 24 24 H 1.09002 * 109.47479 * 273.76264 * 1 2 3 25 25 H 1.09007 * 109.46635 * 33.76227 * 1 2 3 26 26 H 1.08999 * 109.47531 * 153.75811 * 1 2 3 27 27 H 0.97005 * 119.99819 * 180.02562 * 6 5 3 28 28 H 1.08006 * 120.77690 * 0.05029 * 12 11 2 29 29 H 1.08004 * 120.36505 * 180.02562 * 13 12 11 30 30 H 1.08000 * 119.66656 * 359.97438 * 17 16 15 31 31 H 1.08006 * 120.02610 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.34533 * 180.27496 * 19 18 17 33 33 H 1.08002 * 120.32773 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1599 1.2261 -0.3799 5 6 1.5453 2.3365 0.4886 6 7 0.4037 2.2552 1.1368 7 14 2.3534 3.9999 0.2252 8 1 1.8722 4.5875 -1.0509 9 1 2.0030 4.9042 1.3497 10 1 3.8276 3.8304 0.1672 11 6 2.1575 -1.1997 0.0005 12 6 3.5509 -1.2143 0.1050 13 6 4.1983 -2.4348 0.1007 14 7 3.4841 -3.5465 0.0037 15 6 2.1654 -3.5018 -0.0993 16 7 1.4523 -4.6941 -0.2052 17 6 0.0952 -4.6602 -0.3066 18 6 -0.6176 -5.8050 -0.4109 19 6 0.0422 -7.0429 -0.4157 20 6 1.4019 -7.0748 -0.3139 21 6 2.1129 -5.8675 -0.2065 22 8 3.3298 -5.8824 -0.1157 23 7 1.5065 -2.3549 -0.0990 24 1 -0.3634 0.0674 1.0254 25 1 -0.3633 0.8544 -0.5712 26 1 -0.3634 -0.9217 -0.4544 27 1 -0.0187 3.0592 1.4777 28 1 4.1086 -0.2930 0.1875 29 1 5.2743 -2.4823 0.1802 30 1 -0.4175 -3.7096 -0.3038 31 1 -1.6940 -5.7661 -0.4912 32 1 -0.5202 -7.9607 -0.5031 33 1 1.9270 -8.0186 -0.3164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = 81.594180 kcal Electronic energy + Delta-G solvation = -20215.669904 eV Core-core repulsion = 17050.391028 eV Total energy + Delta-G solvation = -3165.278877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.79908 -41.07699 -38.30841 -37.94476 -35.50169 -34.58126 -33.02423 -31.41258 -30.72483 -28.58157 -26.69508 -26.01171 -24.58583 -23.58561 -22.61463 -20.32298 -18.89030 -18.52230 -17.79153 -17.38359 -17.24742 -17.12500 -16.41754 -15.86945 -15.70544 -15.49214 -15.31698 -15.04704 -14.57924 -14.40830 -13.42914 -13.27704 -13.09830 -13.05454 -12.83900 -12.69340 -12.58399 -12.12113 -12.01620 -11.66272 -11.63463 -11.05141 -10.85061 -10.38478 -9.76901 -9.21253 -8.87441 -8.44415 -6.01264 -0.39955 0.52769 0.65612 1.00957 1.26406 1.44550 1.48092 1.56114 2.15385 2.63448 2.72790 2.89050 3.29180 3.43429 3.59806 3.93518 4.08693 4.21990 4.29828 4.44884 4.56572 4.65776 4.69537 4.91954 4.92272 5.13405 5.21980 5.24799 5.30188 5.36205 5.58209 5.68531 5.86703 5.98262 6.23433 6.59813 7.03996 7.13122 7.31388 7.64470 8.54418 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.034486 B = 0.004815 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.734167 B = 5813.778843 C = 6558.036550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.138 3.862 2 N -0.415 5.415 3 C -0.339 4.339 4 H 0.106 0.894 5 C -0.001 4.001 6 N -0.890 5.890 7 Si 1.002 2.998 8 H -0.269 1.269 9 H -0.279 1.279 10 H -0.259 1.259 11 C 0.381 3.619 12 C -0.311 4.311 13 C 0.173 3.827 14 N -0.590 5.590 15 C 0.523 3.477 16 N -0.433 5.433 17 C 0.116 3.884 18 C -0.206 4.206 19 C 0.011 3.989 20 C -0.262 4.262 21 C 0.491 3.509 22 O -0.545 6.545 23 N -0.618 5.618 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.277 0.723 28 H 0.145 0.855 29 H 0.188 0.812 30 H 0.169 0.831 31 H 0.191 0.809 32 H 0.187 0.813 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -9.775 -2.951 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.105 5.105 3 C -0.468 4.468 4 H 0.124 0.876 5 C -0.205 4.205 6 N -0.525 5.525 7 Si 0.825 3.175 8 H -0.195 1.195 9 H -0.205 1.205 10 H -0.183 1.183 11 C 0.133 3.867 12 C -0.342 4.342 13 C 0.016 3.984 14 N -0.318 5.318 15 C 0.165 3.835 16 N -0.145 5.145 17 C -0.008 4.008 18 C -0.228 4.228 19 C -0.010 4.010 20 C -0.284 4.284 21 C 0.293 3.707 22 O -0.424 6.424 23 N -0.354 5.354 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.162 0.838 29 H 0.205 0.795 30 H 0.186 0.814 31 H 0.208 0.792 32 H 0.205 0.795 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.747 -10.168 -2.846 11.577 hybrid contribution 0.733 1.965 0.198 2.106 sum -4.014 -8.204 -2.648 9.509 Atomic orbital electron populations 1.21277 0.79048 0.99407 1.00820 1.42693 1.05819 1.01206 1.60772 1.20034 1.01528 0.84080 1.41127 0.87632 1.26342 0.96853 1.03568 0.93784 1.70167 1.18012 1.31293 1.32988 0.84775 0.78969 0.75781 0.78024 1.19455 1.20471 1.18252 1.18507 0.89494 0.85169 0.93516 1.22047 0.94097 1.00873 1.17219 1.23068 1.00758 0.85757 0.88826 1.68377 1.05204 1.32252 1.25973 1.19307 0.86445 0.84932 0.92787 1.42981 1.07978 1.04910 1.58620 1.22551 0.80632 1.03256 0.94314 1.21280 1.02645 0.89706 1.09162 1.22023 0.93024 0.99955 0.85980 1.22219 0.96363 0.95881 1.13925 1.18152 0.88735 0.83947 0.79826 1.90988 1.14489 1.86083 1.50814 1.66901 1.40642 0.96698 1.31161 0.93852 0.92777 0.92378 0.91290 0.83762 0.79529 0.81371 0.79154 0.79533 0.81724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.31 8.79 127.77 1.12 7.43 16 2 N -0.41 -20.41 3.11 -540.60 -1.68 -22.09 16 3 C -0.34 -16.66 8.95 84.05 0.75 -15.91 16 4 H 0.11 4.96 6.40 -2.91 -0.02 4.94 16 5 C 0.00 -0.05 5.14 84.89 0.44 0.39 16 6 N -0.89 -44.24 10.64 21.66 0.23 -44.01 16 7 Si 1.00 37.41 29.57 68.60 2.03 39.44 16 8 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 9 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 10 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 11 C 0.38 18.20 7.36 133.20 0.98 19.18 16 12 C -0.31 -13.66 9.33 22.61 0.21 -13.45 16 13 C 0.17 7.19 11.29 84.58 0.95 8.14 16 14 N -0.59 -27.56 7.81 -197.69 -1.54 -29.10 16 15 C 0.52 23.58 8.08 261.17 2.11 25.69 16 16 N -0.43 -16.48 2.82 -484.14 -1.36 -17.84 16 17 C 0.12 3.29 10.10 83.34 0.84 4.13 16 18 C -0.21 -3.75 10.01 22.08 0.22 -3.53 16 19 C 0.01 0.19 10.10 22.33 0.23 0.41 16 20 C -0.26 -6.71 9.99 22.39 0.22 -6.49 16 21 C 0.49 18.64 7.37 84.82 0.63 19.27 16 22 O -0.54 -25.38 15.25 -5.42 -0.08 -25.46 16 23 N -0.62 -28.16 7.79 -194.94 -1.52 -29.68 16 24 H 0.04 2.10 7.41 -2.39 -0.02 2.09 16 25 H 0.05 2.52 7.25 -2.38 -0.02 2.50 16 26 H 0.06 2.41 7.22 -2.39 -0.02 2.40 16 27 H 0.28 12.94 8.31 -92.70 -0.77 12.17 16 28 H 0.14 5.97 6.41 -2.91 -0.02 5.95 16 29 H 0.19 6.17 8.06 -2.91 -0.02 6.15 16 30 H 0.17 4.81 7.22 -2.91 -0.02 4.79 16 31 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -69.20 287.22 5.92 -63.28 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.15 Total: 20.22 kcal Atomic # 6 Polarization: 36.56 SS G_CDS: 8.70 Total: 45.26 kcal Atomic # 7 Polarization: -136.85 SS G_CDS: -5.88 Total: -142.72 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.08 Total: -25.46 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -69.20 5.92 -63.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.874 kcal (2) G-P(sol) polarization free energy of solvation -69.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds