Wall clock time and date at job start Mon Mar 30 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46973 * 300.00118 * 3 2 1 6 6 H 1.48507 * 109.47109 * 59.99859 * 3 2 1 7 7 C 1.38630 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99901 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.35817 * 116.99702 * 185.05375 * 9 7 2 11 11 C 1.39454 * 120.40590 * 354.53010 * 10 9 7 12 12 C 1.38202 * 118.44861 * 179.72598 * 11 10 9 13 13 C 1.39171 * 119.17049 * 0.24582 * 12 11 10 14 14 N 1.39125 * 119.62920 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99957 * 359.97438 * 14 13 12 16 16 C 1.50705 * 109.46722 * 180.02562 * 15 14 13 17 17 C 1.38599 * 120.80109 * 269.72061 * 16 15 14 18 18 N 1.32328 * 119.10372 * 179.72162 * 17 16 15 19 19 C 1.31798 * 120.82031 * 0.56725 * 18 17 16 20 20 N 1.31796 * 121.74954 * 359.70903 * 19 18 17 21 21 C 1.32335 * 120.81992 * 359.97438 * 20 19 18 22 22 N 1.32378 * 120.73743 * 0.02757 * 13 12 11 23 23 C 1.31938 * 121.69490 * 359.97429 * 22 13 12 24 24 H 0.96999 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.77181 * 359.97438 * 11 10 9 26 26 H 1.07998 * 120.41277 * 180.22597 * 12 11 10 27 27 H 0.97001 * 119.99719 * 179.97438 * 14 13 12 28 28 H 1.08992 * 109.47527 * 300.00358 * 15 14 13 29 29 H 1.09002 * 109.47005 * 60.00769 * 15 14 13 30 30 H 1.08004 * 120.44799 * 0.02562 * 17 16 15 31 31 H 1.07997 * 119.12436 * 179.72354 * 19 18 17 32 32 H 1.07998 * 120.44423 * 180.02562 * 21 20 19 33 33 H 1.07993 * 119.61878 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0705 -3.5048 0.1055 11 6 3.4638 -3.4474 0.0941 12 6 4.1724 -4.6283 0.2103 13 6 3.4768 -5.8278 0.3289 14 7 4.1805 -7.0222 0.4471 15 6 5.6454 -7.0124 0.4456 16 6 6.1572 -8.4231 0.5846 17 6 6.4041 -8.9685 1.8346 18 7 6.8478 -10.2124 1.9178 19 6 7.0653 -10.9259 0.8312 20 7 6.8471 -10.4385 -0.3737 21 6 6.3975 -9.2043 -0.5346 22 7 2.1531 -5.8451 0.3306 23 6 1.4453 -4.7370 0.2214 24 1 -0.4850 0.8400 0.0004 25 1 3.9771 -2.5018 0.0006 26 1 5.2523 -4.6203 0.2088 27 1 3.7011 -7.8613 0.5304 28 1 6.0050 -6.5865 -0.4910 29 1 6.0056 -6.4110 1.2803 30 1 6.2320 -8.3879 2.7288 31 1 7.4318 -11.9369 0.9308 32 1 6.2204 -8.8112 -1.5248 33 1 0.3667 -4.7900 0.2270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167258445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:42 Heat of formation + Delta-G solvation = 69.144074 kcal Electronic energy + Delta-G solvation = -18928.794934 eV Core-core repulsion = 15762.976180 eV Total energy + Delta-G solvation = -3165.818754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36709 -39.63067 -37.45617 -35.69506 -34.04613 -32.61315 -32.10279 -31.28750 -28.46298 -26.38877 -25.17392 -24.93632 -23.45969 -22.36893 -21.25307 -18.25821 -17.97177 -17.91992 -17.54440 -16.26701 -16.20991 -15.04548 -14.68740 -14.47431 -14.37044 -14.19139 -13.99660 -13.90713 -13.53303 -13.23838 -13.17695 -12.38582 -12.22673 -11.72537 -11.57702 -11.18033 -11.16938 -11.10009 -10.50123 -9.95095 -9.69573 -9.63193 -9.40063 -9.03035 -8.81333 -8.61628 -6.75645 -6.46215 -4.03684 0.44474 0.72029 1.97147 2.34553 3.10459 3.11720 3.17060 3.28163 3.70226 3.79957 3.86064 3.95093 4.24760 4.33470 4.47452 4.63626 5.04432 5.06663 5.22526 5.28126 5.33052 5.45064 5.62809 5.66005 5.86072 5.93066 6.00804 6.44754 6.56567 6.66789 7.05614 7.07165 7.23027 7.55855 7.69799 7.93824 8.00506 8.82861 8.99009 9.67767 10.71690 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.046174 B = 0.003023 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.250900 B = 9260.547491 C = 9582.533559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.089 0.911 9 O -0.177 6.177 10 C 0.067 3.933 11 C -0.156 4.156 12 C -0.182 4.182 13 C 0.306 3.694 14 N -0.739 5.739 15 C 0.189 3.811 16 C -0.205 4.205 17 C 0.167 3.833 18 N -0.522 5.522 19 C 0.294 3.706 20 N -0.522 5.522 21 C 0.167 3.833 22 N -0.499 5.499 23 C 0.068 3.932 24 H 0.269 0.731 25 H 0.137 0.863 26 H 0.117 0.883 27 H 0.396 0.604 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.171 0.829 31 H 0.196 0.804 32 H 0.170 0.830 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 -13.856 1.070 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.011 3.989 11 C -0.184 4.184 12 C -0.206 4.206 13 C 0.075 3.925 14 N -0.379 5.379 15 C 0.062 3.938 16 C -0.209 4.209 17 C 0.001 3.999 18 N -0.235 5.235 19 C 0.006 3.994 20 N -0.235 5.235 21 C 0.001 3.999 22 N -0.215 5.215 23 C -0.091 4.091 24 H 0.079 0.921 25 H 0.154 0.846 26 H 0.135 0.865 27 H 0.230 0.770 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.188 0.812 31 H 0.213 0.787 32 H 0.188 0.812 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.082 -15.259 1.207 20.135 hybrid contribution 0.521 2.178 -0.126 2.243 sum 13.602 -13.081 1.081 18.902 Atomic orbital electron populations 1.70048 1.05900 1.27535 1.46263 1.25256 0.95845 0.98745 0.96684 0.85663 0.79056 0.80506 0.78271 1.19184 1.20160 1.20165 1.21287 0.91628 0.80919 1.52927 0.89345 1.83999 1.33491 1.10962 1.79527 1.20256 0.90820 0.89668 0.98130 1.21408 0.93924 0.98515 1.04504 1.21078 0.99437 0.91621 1.08506 1.17834 0.88156 0.85637 1.00920 1.43854 1.02959 1.06028 1.85047 1.19837 0.81213 0.90400 1.02330 1.21749 1.03891 0.99365 0.95914 1.23286 0.88677 0.90636 0.97323 1.68494 1.13562 1.07159 1.34286 1.25063 0.91438 0.99955 0.82946 1.68496 1.13504 1.14038 1.27469 1.23282 0.88687 0.88493 0.99468 1.66898 1.06025 1.30861 1.17759 1.21455 0.99150 0.84847 1.03634 0.92067 0.84568 0.86541 0.76962 0.91178 0.91171 0.81240 0.78714 0.81245 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -10.59 9.50 30.88 0.29 -10.30 16 8 H 0.09 2.20 5.25 -52.48 -0.28 1.92 16 9 O -0.18 -4.88 9.77 -0.12 0.00 -4.88 16 10 C 0.07 1.56 6.66 -38.97 -0.26 1.30 16 11 C -0.16 -3.21 9.25 -39.14 -0.36 -3.57 16 12 C -0.18 -3.14 9.32 -39.25 -0.37 -3.51 16 13 C 0.31 5.28 7.65 -154.90 -1.19 4.10 16 14 N -0.74 -9.55 5.73 -61.56 -0.35 -9.91 16 15 C 0.19 1.77 5.06 -5.19 -0.03 1.74 16 16 C -0.20 -1.76 5.28 -104.36 -0.55 -2.32 16 17 C 0.17 1.47 11.01 -17.20 -0.19 1.28 16 18 N -0.52 -5.11 10.44 -14.58 -0.15 -5.26 16 19 C 0.29 2.61 12.29 -92.15 -1.13 1.48 16 20 N -0.52 -5.10 10.44 -14.58 -0.15 -5.25 16 21 C 0.17 1.47 11.01 -17.20 -0.19 1.28 16 22 N -0.50 -9.81 10.39 -12.25 -0.13 -9.94 16 23 C 0.07 1.46 11.14 -17.35 -0.19 1.26 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.14 2.74 5.76 -52.49 -0.30 2.44 16 26 H 0.12 1.61 6.70 -52.49 -0.35 1.26 16 27 H 0.40 5.04 8.59 -40.82 -0.35 4.69 16 28 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 29 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 30 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.15 3.04 8.06 -52.49 -0.42 2.62 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -31.84 297.57 -7.75 -39.59 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -2.92 Total: 6.55 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -4.26 Total: -6.30 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.03 Total: -54.45 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.84 -7.75 -39.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167258445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.734 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds